Best TWAS P=9.78e-39 · Best GWAS P=7.07e-37 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AGBL2 | 0.03 | 0.02 | enet | 7 | 0.03 | 7.9e-05 | 5.56 | 5.9 | 4.6e-09 | -0.30 | 0.90 | 0.01 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | DDB2 | 0.03 | 0.02 | bslmm | 309 | 0.00 | 7.9e-02 | 2.61 | 6.0 | 2.3e-09 | -0.30 | 0.14 | 0.04 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | FAM180B | 0.07 | 0.08 | lasso | 3 | 0.08 | 9.1e-10 | -9.83 | -10.6 | 3.5e-26 | 0.94 | 0.03 | 0.97 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | MTCH2 | 0.03 | 0.00 | bslmm | 299 | 0.00 | 1.1e-01 | 6.85 | -11.2 | 2.5e-29 | 0.73 | 0.03 | 0.77 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | PSMC3 | 0.04 | 0.00 | enet | 22 | 0.01 | 3.8e-02 | 7.08 | -8.3 | 1.0e-16 | 0.56 | 0.06 | 0.64 | FALSE |
6 | CommonMind | Brain Pre-frontal Cortex | PTPRJ | 0.06 | 0.04 | lasso | 4 | 0.05 | 7.6e-07 | 5.85 | 6.5 | 1.0e-10 | -0.24 | 1.00 | 0.00 | FALSE |
7 | GTEx | Adipose Subcutaneous | ACP2 | 0.08 | 0.03 | enet | 18 | 0.03 | 3.5e-03 | 7.98 | -6.6 | 3.7e-11 | 0.57 | 0.30 | 0.18 | FALSE |
8 | GTEx | Adipose Subcutaneous | PTPRJ | 0.05 | 0.05 | lasso | 2 | 0.04 | 3.9e-04 | 9.70 | 9.5 | 1.9e-21 | -0.30 | 0.32 | 0.05 | FALSE |
9 | GTEx | Adipose Subcutaneous | C1QTNF4 | 0.16 | 0.22 | lasso | 4 | 0.22 | 2.5e-18 | -9.86 | 10.5 | 1.2e-25 | -0.94 | 0.36 | 0.64 | FALSE |
10 | GTEx | Adipose Visceral Omentum | ARHGAP1 | 0.12 | 0.02 | enet | 15 | 0.04 | 3.8e-03 | 2.92 | -6.9 | 4.0e-12 | 0.14 | 0.09 | 0.29 | FALSE |
11 | GTEx | Artery Aorta | MADD | 0.09 | 0.03 | enet | 22 | 0.04 | 1.9e-03 | -2.06 | 5.2 | 1.7e-07 | 0.07 | 0.14 | 0.04 | FALSE |
12 | GTEx | Artery Aorta | PACSIN3 | 0.10 | 0.04 | lasso | 4 | 0.03 | 1.1e-02 | 2.61 | 6.5 | 7.3e-11 | -0.26 | 0.35 | 0.08 | FALSE |
13 | GTEx | Artery Aorta | C1QTNF4 | 0.09 | 0.10 | lasso | 1 | 0.08 | 3.2e-05 | -9.83 | 9.8 | 8.7e-23 | -0.88 | 0.05 | 0.92 | FALSE |
14 | GTEx | Brain Cerebellar Hemisphere | MADD | 0.44 | 0.14 | lasso | 7 | 0.21 | 4.0e-06 | 7.98 | -8.0 | 1.6e-15 | 0.44 | 0.22 | 0.47 | FALSE |
15 | GTEx | Brain Cerebellar Hemisphere | ACP2 | 0.29 | 0.05 | enet | 16 | 0.12 | 5.9e-04 | 4.90 | -7.7 | 1.6e-14 | 0.39 | 0.08 | 0.14 | FALSE |
16 | GTEx | Brain Cerebellum | MADD | 0.21 | 0.00 | enet | 13 | 0.11 | 3.3e-04 | 3.48 | -7.6 | 2.4e-14 | 0.60 | 0.14 | 0.38 | FALSE |
17 | GTEx | Brain Cortex | MTCH2 | 0.21 | 0.19 | lasso | 6 | 0.16 | 4.0e-05 | -12.55 | -13.0 | 9.8e-39 | 0.95 | 0.02 | 0.95 | TRUE |
18 | GTEx | Brain Cortex | C1QTNF4 | 0.26 | 0.04 | lasso | 8 | 0.02 | 1.2e-01 | 5.50 | 7.1 | 1.2e-12 | -0.79 | 0.03 | 0.43 | FALSE |
19 | GTEx | Brain Hypothalamus | NR1H3 | 0.25 | 0.18 | lasso | 5 | 0.10 | 2.7e-03 | 7.97 | 7.7 | 1.2e-14 | -0.33 | 0.15 | 0.06 | FALSE |
20 | GTEx | Brain Putamen basal ganglia | CKAP5 | 0.25 | 0.07 | lasso | 3 | 0.14 | 4.4e-04 | 5.16 | 7.5 | 5.3e-14 | -0.44 | 0.05 | 0.22 | FALSE |
21 | GTEx | Breast Mammary Tissue | C1QTNF4 | 0.10 | 0.06 | lasso | 2 | 0.03 | 8.5e-03 | -10.38 | 10.5 | 1.1e-25 | -0.93 | 0.04 | 0.89 | FALSE |
22 | GTEx | Breast Mammary Tissue (Female) | MADD | 0.13 | 0.04 | lasso | 3 | 0.05 | 1.3e-02 | -10.32 | -10.1 | 6.3e-24 | 0.90 | 0.03 | 0.54 | FALSE |
23 | GTEx | Breast Mammary Tissue (Female) | ACP2 | 0.03 | 0.00 | lasso | 1 | 0.02 | 1.0e-01 | 6.08 | -6.1 | 1.3e-09 | 0.32 | 0.02 | 0.18 | FALSE |
24 | GTEx | Breast Mammary Tissue (Female) | PSMC3 | 0.02 | 0.01 | lasso | 1 | 0.04 | 2.5e-02 | 10.23 | -10.2 | 1.4e-24 | 0.47 | 0.02 | 0.20 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | FNBP4 | 0.11 | 0.05 | lasso | 8 | 0.08 | 1.6e-06 | 5.42 | -8.1 | 4.5e-16 | 0.85 | 0.29 | 0.70 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | PSMC3 | 0.07 | 0.00 | enet | 13 | 0.02 | 2.3e-02 | 10.23 | -11.0 | 6.5e-28 | 0.79 | 0.05 | 0.58 | FALSE |
27 | GTEx | Cells Transformed fibroblasts | C1QTNF4 | 0.13 | 0.11 | enet | 19 | 0.12 | 5.2e-09 | -12.69 | 10.8 | 2.2e-27 | -0.85 | 0.01 | 0.99 | FALSE |
28 | GTEx | Cells Transformed fibroblasts | NDUFS3 | 0.08 | 0.01 | lasso | 2 | 0.01 | 3.3e-02 | -9.86 | 10.3 | 7.5e-25 | -0.87 | 0.03 | 0.86 | FALSE |
29 | GTEx | Colon Transverse | C1QTNF4 | 0.07 | 0.02 | lasso | 6 | 0.03 | 2.0e-02 | -9.86 | 11.3 | 1.1e-29 | -0.95 | 0.03 | 0.91 | FALSE |
30 | GTEx | Esophagus Gastroesophageal Junction | CKAP5 | 0.11 | 0.04 | lasso | 3 | 0.03 | 2.1e-02 | 5.21 | 6.6 | 5.3e-11 | -0.24 | 0.16 | 0.46 | FALSE |
31 | GTEx | Esophagus Mucosa | ACP2 | 0.07 | 0.04 | enet | 11 | 0.04 | 6.2e-04 | 3.85 | -5.7 | 1.0e-08 | 0.27 | 0.78 | 0.05 | TRUE |
32 | GTEx | Esophagus Mucosa | ARFGAP2 | 0.05 | 0.06 | lasso | 4 | 0.05 | 4.4e-04 | 5.21 | 5.2 | 2.3e-07 | -0.14 | 0.32 | 0.03 | FALSE |
33 | GTEx | Esophagus Mucosa | PACSIN3 | 0.24 | 0.19 | lasso | 8 | 0.21 | 7.5e-14 | 3.64 | 5.6 | 2.8e-08 | -0.25 | 1.00 | 0.00 | FALSE |
34 | GTEx | Esophagus Mucosa | C1QTNF4 | 0.10 | 0.11 | lasso | 1 | 0.10 | 5.0e-07 | -9.83 | 9.8 | 8.7e-23 | -0.88 | 0.13 | 0.86 | FALSE |
35 | GTEx | Esophagus Muscularis | MTCH2 | 0.09 | 0.04 | lasso | 6 | 0.02 | 1.8e-02 | -12.69 | -9.6 | 9.7e-22 | 0.93 | 0.02 | 0.97 | FALSE |
36 | GTEx | Esophagus Muscularis | C1QTNF4 | 0.10 | 0.05 | enet | 23 | 0.06 | 1.4e-04 | -9.86 | 10.5 | 1.0e-25 | -0.88 | 0.09 | 0.90 | FALSE |
37 | GTEx | Heart Atrial Appendage | ACP2 | 0.10 | 0.12 | enet | 7 | 0.10 | 2.7e-05 | 3.50 | -6.2 | 5.5e-10 | 0.49 | 0.32 | 0.08 | FALSE |
38 | GTEx | Heart Atrial Appendage | C1QTNF4 | 0.26 | 0.14 | lasso | 9 | 0.17 | 3.9e-08 | -9.83 | 10.3 | 4.9e-25 | -0.93 | 0.06 | 0.94 | TRUE |
39 | GTEx | Heart Left Ventricle | MADD | 0.14 | 0.01 | enet | 17 | 0.05 | 7.0e-04 | 5.12 | -6.8 | 8.3e-12 | 0.48 | 0.28 | 0.40 | FALSE |
40 | GTEx | Heart Left Ventricle | ACP2 | 0.11 | 0.06 | enet | 18 | 0.10 | 9.2e-06 | 5.12 | -6.8 | 1.3e-11 | 0.30 | 0.81 | 0.01 | FALSE |
41 | GTEx | Heart Left Ventricle | C1QTNF4 | 0.10 | 0.11 | lasso | 1 | 0.09 | 1.1e-05 | -9.83 | 9.8 | 8.7e-23 | -0.88 | 0.14 | 0.59 | FALSE |
42 | GTEx | Heart Left Ventricle | ARHGAP1 | 0.06 | 0.03 | lasso | 2 | 0.02 | 2.1e-02 | 6.45 | -6.0 | 1.9e-09 | 0.18 | 0.12 | 0.50 | FALSE |
43 | GTEx | Liver | PSMC3 | 0.15 | 0.09 | lasso | 4 | 0.07 | 5.9e-03 | -7.66 | -8.9 | 3.8e-19 | 0.69 | 0.04 | 0.63 | FALSE |
44 | GTEx | Liver | C1QTNF4 | 0.25 | 0.14 | enet | 16 | 0.20 | 2.3e-06 | -9.83 | 7.4 | 1.0e-13 | -0.84 | 0.03 | 0.94 | FALSE |
45 | GTEx | Lung | ACP2 | 0.04 | 0.03 | lasso | 2 | 0.04 | 4.3e-04 | 7.52 | -7.3 | 2.4e-13 | 0.32 | 0.55 | 0.02 | FALSE |
46 | GTEx | Lung | PSMC3 | 0.07 | 0.02 | lasso | 2 | 0.03 | 3.6e-03 | 7.08 | -7.4 | 1.8e-13 | 0.29 | 0.18 | 0.09 | TRUE |
47 | GTEx | Lung | C1QTNF4 | 0.18 | 0.15 | lasso | 6 | 0.13 | 3.2e-10 | -10.30 | 11.3 | 1.3e-29 | -0.97 | 0.02 | 0.98 | FALSE |
48 | GTEx | Muscle Skeletal | MTCH2 | 0.05 | 0.03 | enet | 15 | 0.04 | 1.5e-04 | -11.42 | -11.6 | 2.6e-31 | 0.92 | 0.01 | 0.98 | FALSE |
49 | GTEx | Muscle Skeletal | SLC39A13 | 0.05 | 0.01 | lasso | 3 | 0.01 | 8.5e-02 | 7.08 | -8.5 | 1.9e-17 | 0.34 | 0.11 | 0.03 | FALSE |
50 | GTEx | Muscle Skeletal | C1QTNF4 | 0.09 | 0.14 | lasso | 3 | 0.13 | 9.9e-13 | -9.83 | 11.0 | 5.5e-28 | -0.94 | 0.10 | 0.90 | FALSE |
51 | GTEx | Nerve Tibial | LRP4 | 0.28 | 0.24 | enet | 24 | 0.30 | 3.5e-21 | -5.76 | 6.9 | 4.8e-12 | -0.33 | 1.00 | 0.00 | FALSE |
52 | GTEx | Nerve Tibial | PTPRJ | 0.05 | 0.03 | enet | 13 | 0.03 | 2.7e-03 | 6.73 | 9.8 | 7.6e-23 | -0.55 | 0.15 | 0.28 | FALSE |
53 | GTEx | Nerve Tibial | C11orf49 | 0.17 | 0.01 | enet | 21 | 0.05 | 9.5e-05 | 5.24 | 6.1 | 9.2e-10 | -0.36 | 0.42 | 0.08 | FALSE |
54 | GTEx | Nerve Tibial | SLC39A13 | 0.07 | 0.01 | enet | 14 | 0.02 | 7.6e-03 | -10.34 | -10.4 | 1.8e-25 | 0.71 | 0.13 | 0.32 | FALSE |
55 | GTEx | Nerve Tibial | C1QTNF4 | 0.20 | 0.23 | enet | 12 | 0.23 | 1.7e-16 | -9.83 | 10.7 | 1.2e-26 | -0.92 | 0.65 | 0.35 | FALSE |
56 | GTEx | Nerve Tibial | LRP4-AS1 | 0.23 | 0.16 | enet | 15 | 0.24 | 1.1e-16 | -5.76 | 5.8 | 5.5e-09 | -0.30 | 1.00 | 0.00 | FALSE |
57 | GTEx | Pancreas | LRP4 | 0.11 | 0.10 | enet | 16 | 0.14 | 1.8e-06 | 5.21 | -5.8 | 7.3e-09 | 0.16 | 0.92 | 0.00 | FALSE |
58 | GTEx | Pancreas | LRP4-AS1 | 0.10 | 0.08 | lasso | 6 | 0.12 | 1.4e-05 | 5.21 | -6.0 | 2.3e-09 | 0.24 | 0.78 | 0.01 | FALSE |
59 | GTEx | Pituitary | MADD | 0.42 | 0.32 | lasso | 6 | 0.39 | 8.9e-11 | 0.47 | -5.8 | 4.8e-09 | 0.70 | 0.05 | 0.92 | FALSE |
60 | GTEx | Prostate | PSMC3 | 0.21 | 0.10 | lasso | 6 | 0.20 | 7.9e-06 | 6.55 | -9.4 | 7.1e-21 | 0.50 | 0.14 | 0.10 | FALSE |
61 | GTEx | Skin Not Sun Exposed Suprapubic | LRP4 | 0.13 | 0.00 | lasso | 7 | 0.02 | 3.5e-02 | 5.52 | 10.5 | 1.3e-25 | -0.62 | 0.04 | 0.68 | FALSE |
62 | GTEx | Skin Not Sun Exposed Suprapubic | DDB2 | 0.07 | 0.02 | enet | 13 | 0.04 | 3.5e-03 | 7.52 | 7.0 | 3.7e-12 | -0.21 | 0.15 | 0.04 | FALSE |
63 | GTEx | Skin Not Sun Exposed Suprapubic | PACSIN3 | 0.11 | 0.05 | lasso | 3 | 0.10 | 3.4e-06 | 3.59 | 6.0 | 1.9e-09 | -0.24 | 0.63 | 0.02 | FALSE |
64 | GTEx | Skin Not Sun Exposed Suprapubic | SLC39A13 | 0.07 | 0.11 | lasso | 2 | 0.10 | 5.2e-06 | 6.17 | 6.2 | 6.4e-10 | -0.30 | 0.38 | 0.03 | FALSE |
65 | GTEx | Skin Not Sun Exposed Suprapubic | C1QTNF4 | 0.32 | 0.18 | enet | 33 | 0.20 | 5.2e-11 | -9.83 | 10.4 | 1.7e-25 | -0.83 | 0.04 | 0.96 | FALSE |
66 | GTEx | Skin Sun Exposed Lower leg | PTPMT1 | 0.13 | 0.01 | enet | 33 | 0.03 | 3.0e-03 | 3.85 | 7.6 | 3.7e-14 | -0.19 | 0.18 | 0.10 | FALSE |
67 | GTEx | Skin Sun Exposed Lower leg | ACP2 | 0.16 | 0.14 | enet | 15 | 0.15 | 1.8e-12 | 8.05 | -9.1 | 1.2e-19 | 0.44 | 1.00 | 0.00 | FALSE |
68 | GTEx | Skin Sun Exposed Lower leg | PACSIN3 | 0.17 | 0.11 | lasso | 4 | 0.12 | 5.5e-10 | 3.59 | 5.6 | 2.6e-08 | -0.22 | 1.00 | 0.00 | FALSE |
69 | GTEx | Skin Sun Exposed Lower leg | PSMC3 | 0.20 | 0.05 | lasso | 7 | 0.10 | 1.2e-08 | 10.23 | -11.1 | 1.7e-28 | 0.71 | 0.56 | 0.42 | FALSE |
70 | GTEx | Skin Sun Exposed Lower leg | C1QTNF4 | 0.25 | 0.22 | lasso | 12 | 0.23 | 4.2e-19 | -9.83 | 10.3 | 9.6e-25 | -0.93 | 0.03 | 0.97 | FALSE |
71 | GTEx | Skin Sun Exposed Lower leg | ARHGAP1 | 0.08 | 0.01 | lasso | 5 | 0.02 | 1.4e-02 | 5.08 | -5.8 | 6.8e-09 | 0.14 | 0.20 | 0.30 | FALSE |
72 | GTEx | Spleen | ACP2 | 0.19 | -0.01 | lasso | 5 | 0.04 | 4.1e-02 | 5.33 | -5.4 | 6.3e-08 | 0.25 | 0.11 | 0.14 | FALSE |
73 | GTEx | Spleen | PTPRJ | 0.22 | 0.05 | lasso | 5 | 0.03 | 7.5e-02 | 5.11 | 5.3 | 1.0e-07 | -0.23 | 0.08 | 0.06 | FALSE |
74 | GTEx | Spleen | C1QTNF4 | 0.31 | 0.28 | enet | 29 | 0.34 | 1.8e-09 | -12.55 | 10.9 | 1.7e-27 | -0.93 | 0.02 | 0.98 | FALSE |
75 | GTEx | Testis | NR1H3 | 0.10 | 0.10 | lasso | 6 | 0.08 | 2.9e-04 | 8.72 | -8.6 | 7.0e-18 | 0.32 | 0.61 | 0.02 | FALSE |
76 | GTEx | Testis | MTCH2 | 0.17 | 0.16 | lasso | 3 | 0.16 | 1.0e-07 | -10.38 | -10.4 | 1.9e-25 | 0.93 | 0.04 | 0.96 | FALSE |
77 | GTEx | Testis | C1QTNF4 | 0.14 | 0.12 | lasso | 4 | 0.11 | 1.6e-05 | 5.42 | 5.4 | 8.3e-08 | -0.66 | 0.71 | 0.16 | FALSE |
78 | GTEx | Whole Blood | C1QTNF4 | 0.09 | 0.05 | lasso | 3 | 0.03 | 1.4e-03 | -12.57 | 12.7 | 8.5e-37 | -0.98 | 0.01 | 0.98 | FALSE |
79 | METSIM | Adipose | ACP2 | 0.05 | 0.04 | blup | 302 | 0.06 | 1.7e-09 | -10.38 | -9.8 | 9.4e-23 | 0.70 | 0.05 | 0.95 | FALSE |
80 | METSIM | Adipose | ARHGAP1 | 0.08 | 0.02 | enet | 23 | 0.06 | 3.6e-09 | 4.90 | -6.2 | 4.6e-10 | 0.13 | 0.38 | 0.62 | FALSE |
81 | METSIM | Adipose | C1QTNF4 | 0.24 | 0.31 | lasso | 7 | 0.31 | 1.2e-46 | -12.62 | 12.8 | 1.9e-37 | -0.99 | 0.01 | 0.99 | FALSE |
82 | METSIM | Adipose | MADD | 0.05 | 0.02 | bslmm | 315 | 0.02 | 8.3e-04 | 5.11 | 5.6 | 2.5e-08 | -0.11 | 0.25 | 0.04 | FALSE |
83 | METSIM | Adipose | MYBPC3 | 0.11 | 0.10 | enet | 26 | 0.11 | 1.0e-15 | -10.38 | 10.3 | 1.1e-24 | -0.87 | 0.05 | 0.95 | FALSE |
84 | METSIM | Adipose | PSMC3 | 0.06 | 0.03 | enet | 28 | 0.04 | 2.3e-06 | -9.39 | -12.4 | 2.2e-35 | 0.85 | 0.04 | 0.95 | FALSE |
85 | METSIM | Adipose | RAPSN | 0.11 | 0.01 | enet | 21 | 0.06 | 7.9e-09 | 1.52 | 8.2 | 3.6e-16 | -0.28 | 0.90 | 0.09 | FALSE |
86 | NTR | Blood | ACP2 | 0.01 | 0.00 | enet | 7 | 0.01 | 2.5e-03 | 3.85 | -6.1 | 8.4e-10 | 0.42 | 0.44 | 0.08 | FALSE |
87 | NTR | Blood | DDB2 | 0.01 | 0.00 | lasso | 7 | 0.01 | 2.2e-03 | 5.33 | -5.5 | 4.8e-08 | 0.22 | 0.32 | 0.01 | FALSE |
88 | NTR | Blood | MTCH2 | 0.02 | 0.04 | lasso | 1 | 0.04 | 1.3e-11 | -12.69 | 12.7 | 7.1e-37 | -1.00 | 0.01 | 0.99 | FALSE |
89 | NTR | Blood | PTPRJ | 0.04 | 0.01 | blup | 285 | 0.02 | 8.5e-08 | 8.28 | 6.2 | 5.8e-10 | -0.25 | 0.99 | 0.00 | FALSE |
90 | ROSMAP | Brain Pre-frontal Cortex | NR1H3 | 0.06 | 0.01 | blup | 302 | 0.04 | 1.5e-05 | 3.85 | 5.2 | 2.5e-07 | -0.19 | 0.87 | 0.00 | FALSE |
91 | ROSMAP | Brain Pre-frontal Cortex | FOLH1 | 0.11 | 0.17 | lasso | 8 | 0.16 | 1.4e-20 | 6.48 | 6.2 | 5.4e-10 | -0.31 | 0.00 | 1.00 | FALSE |
92 | ROSMAP | Brain Pre-frontal Cortex | MTCH2 | 0.35 | 0.40 | enet | 9 | 0.40 | 4.7e-56 | -12.62 | -12.5 | 1.1e-35 | 1.00 | 0.01 | 0.99 | FALSE |
93 | ROSMAP | Brain Pre-frontal Cortex | PTPMT1 | 0.03 | 0.02 | blup | 270 | 0.02 | 3.8e-04 | 6.17 | 7.8 | 5.5e-15 | -0.47 | 0.55 | 0.13 | FALSE |
94 | ROSMAP | Brain Pre-frontal Cortex | LRP4 | 0.04 | 0.06 | blup | 286 | 0.05 | 3.5e-07 | 4.90 | 5.6 | 2.6e-08 | -0.15 | 0.99 | 0.00 | FALSE |
95 | ROSMAP | Brain Pre-frontal Cortex | ACP2 | 0.03 | 0.00 | blup | 295 | 0.02 | 1.5e-03 | -10.46 | -9.9 | 2.8e-23 | 0.68 | 0.27 | 0.38 | FALSE |
96 | ROSMAP | Brain Pre-frontal Cortex | C11orf49 | 0.02 | 0.02 | blup | 322 | 0.02 | 3.3e-04 | 4.95 | 6.1 | 1.1e-09 | -0.23 | 0.92 | 0.00 | FALSE |
97 | ROSMAP | Brain Pre-frontal Cortex | CELF1 | 0.03 | 0.01 | bslmm | 289 | 0.01 | 2.9e-02 | 8.97 | 11.5 | 1.1e-30 | -0.55 | 0.16 | 0.12 | FALSE |
98 | ROSMAP | Brain Pre-frontal Cortex | PSMC3 | 0.15 | 0.08 | bslmm | 285 | 0.10 | 5.1e-13 | 7.06 | -11.0 | 2.9e-28 | 0.63 | 0.92 | 0.07 | FALSE |
99 | ROSMAP | Brain Pre-frontal Cortex | C1QTNF4 | 0.05 | 0.06 | blup | 281 | 0.06 | 1.7e-08 | -10.44 | 13.0 | 1.9e-38 | -0.89 | 0.03 | 0.97 | FALSE |
100 | YFS | Blood | CKAP5 | 0.01 | 0.01 | bslmm | 291 | 0.01 | 3.6e-03 | 3.71 | -5.8 | 5.8e-09 | 0.49 | 0.03 | 0.18 | FALSE |
101 | YFS | Blood | NR1H3 | 0.34 | 0.15 | enet | 66 | 0.24 | 3.1e-76 | 7.55 | -8.3 | 1.5e-16 | 0.45 | 1.00 | 0.00 | FALSE |
102 | YFS | Blood | NUP160 | 0.02 | 0.01 | blup | 290 | 0.01 | 1.7e-04 | -12.65 | -11.2 | 2.4e-29 | 0.79 | 0.02 | 0.97 | FALSE |
103 | YFS | Blood | PHF21A | 0.01 | 0.01 | bslmm | 385 | 0.00 | 1.9e-02 | -6.47 | -6.3 | 3.8e-10 | 0.10 | 0.03 | 0.95 | TRUE |
104 | YFS | Blood | PSMC3 | 0.02 | 0.01 | blup | 289 | 0.01 | 2.8e-05 | -9.86 | -10.7 | 1.1e-26 | 0.74 | 0.19 | 0.73 | FALSE |
105 | YFS | Blood | PTPMT1 | 0.03 | 0.01 | lasso | 5 | 0.01 | 3.2e-04 | 5.60 | 6.3 | 2.5e-10 | -0.63 | 0.29 | 0.60 | FALSE |
106 | YFS | Blood | PTPRJ | 0.02 | 0.01 | bslmm | 281 | 0.02 | 2.8e-06 | 8.30 | 6.4 | 1.3e-10 | -0.23 | 0.48 | 0.02 | FALSE |
107 | YFS | Blood | SPI1 | 0.65 | 0.18 | enet | 75 | 0.27 | 1.6e-87 | -10.47 | 7.6 | 2.7e-14 | -0.73 | 1.00 | 0.00 | FALSE |
108 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C1QTNF4 | 0.06 | 0.07 | lasso | 2 | 0.06 | 4.9e-06 | -12.66 | 12.2 | 4.3e-34 | -0.99 | 0.00 | 1.00 | FALSE |
109 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ACP2 | 0.02 | 0.01 | blup | 44 | 0.02 | 2.7e-04 | 3.48 | -6.0 | 2.7e-09 | 0.47 | 0.04 | 0.26 | FALSE |
110 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C11orf49 | 0.05 | 0.00 | blup | 90 | 0.02 | 3.0e-04 | 4.53 | 5.3 | 1.2e-07 | -0.18 | 0.16 | 0.39 | FALSE |
111 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C1QTNF4 | 0.02 | 0.01 | lasso | 5 | 0.02 | 2.1e-04 | 5.90 | 9.0 | 2.2e-19 | -0.66 | 0.04 | 0.47 | FALSE |
112 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MADD | 0.11 | 0.03 | enet | 14 | 0.06 | 1.4e-11 | 0.82 | -5.2 | 2.5e-07 | 0.59 | 0.04 | 0.96 | FALSE |
113 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MYBPC3 | 0.02 | 0.01 | blup | 43 | 0.01 | 3.4e-03 | -10.30 | 7.9 | 2.0e-15 | -0.84 | 0.01 | 0.97 | FALSE |
114 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NUP160 | 0.03 | 0.01 | blup | 44 | 0.01 | 1.9e-03 | -11.39 | -11.2 | 2.6e-29 | 0.81 | 0.01 | 0.60 | FALSE |
115 | The Cancer Genome Atlas | Colon Adenocarcinoma | C1QTNF4 | 0.12 | 0.12 | lasso | 1 | 0.12 | 1.6e-07 | -9.83 | 9.8 | 8.7e-23 | -0.88 | 0.03 | 0.96 | FALSE |
116 | The Cancer Genome Atlas | Colon Adenocarcinoma | KBTBD4 | 0.14 | 0.01 | blup | 13 | 0.02 | 1.6e-02 | 5.66 | -11.5 | 2.1e-30 | 0.85 | 0.00 | 0.52 | TRUE |
117 | The Cancer Genome Atlas | Colon Adenocarcinoma | NUP160 | 0.05 | 0.05 | blup | 44 | 0.05 | 7.7e-04 | 5.42 | -6.7 | 1.7e-11 | 0.72 | 0.08 | 0.25 | FALSE |
118 | The Cancer Genome Atlas | Colon Adenocarcinoma | PSMC3 | 0.09 | 0.05 | blup | 39 | 0.05 | 1.0e-03 | 0.42 | -5.4 | 5.9e-08 | 0.67 | 0.02 | 0.82 | FALSE |
119 | The Cancer Genome Atlas | Esophageal Carcinoma | C1QTNF4 | 0.39 | 0.33 | blup | 15 | 0.35 | 6.1e-12 | -9.83 | 11.0 | 3.4e-28 | -0.93 | 0.01 | 0.99 | FALSE |
120 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C1QTNF4 | 0.06 | 0.08 | lasso | 3 | 0.08 | 7.5e-09 | -12.62 | 12.6 | 1.8e-36 | -0.99 | 0.00 | 1.00 | FALSE |
121 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FNBP4 | 0.10 | 0.03 | blup | 45 | 0.05 | 7.7e-06 | -12.65 | -11.2 | 2.8e-29 | 0.80 | 0.00 | 0.99 | FALSE |
122 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MYBPC3 | 0.05 | 0.03 | blup | 43 | 0.04 | 6.0e-05 | -7.81 | 8.7 | 3.1e-18 | -0.78 | 0.01 | 0.98 | FALSE |
123 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NUP160 | 0.08 | 0.03 | blup | 42 | 0.04 | 6.7e-05 | -12.65 | -11.2 | 2.9e-29 | 0.88 | 0.01 | 0.98 | FALSE |
124 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PSMC3 | 0.05 | 0.01 | lasso | 3 | 0.02 | 9.4e-04 | 5.07 | -10.1 | 5.7e-24 | 0.69 | 0.01 | 0.72 | FALSE |
125 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ACP2 | 0.03 | 0.03 | blup | 44 | 0.04 | 3.5e-05 | 8.72 | -7.5 | 4.5e-14 | 0.30 | 0.01 | 0.99 | FALSE |
126 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C1QTNF4 | 0.12 | 0.14 | enet | 4 | 0.16 | 6.5e-18 | -12.62 | 11.9 | 1.5e-32 | -0.98 | 0.00 | 1.00 | FALSE |
127 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PSMC3 | 0.05 | 0.04 | lasso | 3 | 0.05 | 3.8e-06 | -9.39 | -10.4 | 2.8e-25 | 0.84 | 0.02 | 0.98 | FALSE |
128 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C1QTNF4 | 0.13 | 0.16 | lasso | 1 | 0.16 | 3.1e-09 | -12.68 | 12.7 | 7.5e-37 | -1.00 | 0.00 | 1.00 | FALSE |
129 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | NUP160 | 0.13 | 0.05 | lasso | 4 | 0.04 | 2.6e-03 | 8.28 | -8.3 | 1.2e-16 | 0.38 | 0.09 | 0.04 | FALSE |
130 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PSMC3 | 0.07 | 0.07 | enet | 7 | 0.06 | 1.4e-04 | -10.34 | -10.4 | 2.6e-25 | 0.92 | 0.01 | 0.97 | FALSE |
131 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ACP2 | 0.09 | 0.04 | enet | 12 | 0.06 | 5.0e-07 | 7.98 | -8.4 | 5.9e-17 | 0.54 | 0.08 | 0.92 | FALSE |
132 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MADD | 0.08 | 0.01 | lasso | 5 | 0.05 | 3.1e-06 | -10.46 | -7.6 | 3.3e-14 | 0.62 | 0.00 | 0.95 | FALSE |
133 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTCH2 | 0.11 | 0.11 | lasso | 2 | 0.10 | 6.4e-12 | -12.62 | -12.6 | 1.3e-36 | 0.99 | 0.00 | 1.00 | FALSE |
134 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYBPC3 | 0.03 | 0.01 | blup | 43 | 0.02 | 3.2e-03 | -10.36 | 10.1 | 3.5e-24 | -0.79 | 0.01 | 0.88 | FALSE |
135 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSMC3 | 0.10 | 0.05 | blup | 39 | 0.08 | 3.7e-09 | -10.38 | -10.4 | 1.7e-25 | 0.69 | 0.02 | 0.98 | FALSE |
136 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C1QTNF4 | 0.19 | 0.19 | lasso | 3 | 0.19 | 3.2e-09 | -12.62 | 12.6 | 1.3e-36 | -0.99 | 0.00 | 1.00 | FALSE |
137 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PSMC3 | 0.09 | 0.07 | blup | 39 | 0.06 | 8.7e-04 | -10.36 | -10.6 | 2.2e-26 | 0.89 | 0.01 | 0.98 | FALSE |
138 | The Cancer Genome Atlas | Lung Adenocarcinoma | C1QTNF4 | 0.03 | 0.02 | blup | 15 | 0.02 | 1.3e-03 | -9.83 | 10.2 | 2.6e-24 | -0.92 | 0.00 | 0.96 | FALSE |
139 | The Cancer Genome Atlas | Lung Adenocarcinoma | MYBPC3 | 0.04 | 0.02 | enet | 10 | 0.04 | 2.9e-05 | -10.30 | 7.4 | 1.2e-13 | -0.73 | 0.01 | 0.98 | FALSE |
140 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DDB2 | 0.02 | 0.03 | lasso | 1 | 0.02 | 1.0e-03 | 7.55 | 7.5 | 4.2e-14 | -0.33 | 0.01 | 0.91 | FALSE |
141 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | LOC440040 | 0.03 | 0.02 | blup | 71 | 0.01 | 2.4e-02 | 5.84 | 5.8 | 5.0e-09 | -0.32 | 0.03 | 0.35 | FALSE |
142 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SLC39A13 | 0.06 | 0.01 | blup | 58 | 0.04 | 9.3e-04 | 6.58 | -9.7 | 4.2e-22 | 0.61 | 0.02 | 0.34 | FALSE |
143 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ARHGAP1 | 0.05 | 0.04 | blup | 26 | 0.05 | 1.1e-05 | 5.08 | -5.2 | 1.7e-07 | 0.16 | 0.01 | 0.98 | FALSE |
144 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FOLH1 | 0.03 | 0.01 | blup | 38 | 0.02 | 2.9e-03 | 6.49 | 5.5 | 2.8e-08 | -0.27 | 0.00 | 0.98 | FALSE |
145 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NUP160 | 0.03 | 0.02 | enet | 7 | 0.02 | 6.3e-03 | -11.42 | -10.0 | 1.4e-23 | 0.91 | 0.01 | 0.90 | FALSE |
146 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PSMC3 | 0.02 | 0.02 | blup | 39 | 0.02 | 5.7e-03 | -10.38 | -12.1 | 6.4e-34 | 0.85 | 0.01 | 0.64 | FALSE |
147 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ACP2 | 0.08 | 0.06 | enet | 7 | 0.06 | 1.6e-04 | 2.72 | -5.2 | 2.3e-07 | 0.28 | 0.02 | 0.45 | FALSE |
148 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C1QTNF4 | 0.06 | 0.04 | lasso | 4 | 0.03 | 4.3e-03 | -12.66 | 12.3 | 1.0e-34 | -0.99 | 0.00 | 0.94 | FALSE |
149 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ZNF408 | 0.11 | 0.04 | enet | 16 | 0.05 | 2.0e-04 | 5.89 | -5.2 | 2.2e-07 | 0.20 | 0.01 | 0.72 | FALSE |
150 | The Cancer Genome Atlas | Thyroid Carcinoma | C1QTNF4 | 0.04 | 0.01 | blup | 15 | 0.03 | 7.9e-04 | -9.83 | 8.7 | 4.2e-18 | -0.82 | 0.01 | 0.85 | FALSE |
151 | The Cancer Genome Atlas | Thyroid Carcinoma | DDB2 | 0.06 | 0.04 | enet | 17 | 0.03 | 1.3e-03 | 5.13 | 5.9 | 3.7e-09 | -0.22 | 0.03 | 0.95 | FALSE |