Best TWAS P=6.74e-32 · Best GWAS P=2.36e-22 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | C20orf203 | 0.12 | 0.08 | bslmm | 414 | 0.06 | 2.5e-08 | -8.77 | -5.7 | 1.3e-08 | -0.08 | 0.88 | 0.12 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | E2F1 | 0.06 | 0.01 | bslmm | 268 | 0.02 | 1.6e-03 | 4.38 | -5.5 | 3.7e-08 | -0.01 | 0.02 | 0.87 | TRUE |
3 | CommonMind | Brain Pre-frontal Cortex | FRG1B | 0.15 | 0.11 | lasso | 5 | 0.11 | 1.4e-13 | -6.11 | -6.0 | 2.4e-09 | 0.29 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | MAP1LC3A | 0.22 | 0.14 | blup | 309 | 0.19 | 3.9e-22 | -5.44 | 5.2 | 1.5e-07 | 0.00 | 0.12 | 0.88 | FALSE |
5 | GTEx | Adipose Subcutaneous | COX4I2 | 0.09 | 0.11 | lasso | 3 | 0.11 | 5.3e-09 | -8.82 | -9.3 | 2.0e-20 | 0.87 | 0.07 | 0.93 | FALSE |
6 | GTEx | Adipose Subcutaneous | FRG1B | 0.06 | 0.04 | enet | 8 | 0.04 | 3.6e-04 | -4.94 | -6.0 | 2.0e-09 | 0.33 | 0.61 | 0.10 | TRUE |
7 | GTEx | Adipose Subcutaneous | NCOA6 | 0.10 | 0.06 | enet | 29 | 0.07 | 1.3e-06 | -4.41 | 7.0 | 2.8e-12 | -0.03 | 0.46 | 0.53 | TRUE |
8 | GTEx | Artery Aorta | PYGB | 0.07 | 0.02 | lasso | 9 | 0.02 | 3.4e-02 | -7.27 | -5.8 | 5.7e-09 | 0.15 | 0.08 | 0.63 | TRUE |
9 | GTEx | Artery Tibial | PYGB | 0.13 | 0.01 | enet | 21 | 0.08 | 4.2e-07 | -7.27 | -7.6 | 2.5e-14 | -0.02 | 0.04 | 0.87 | FALSE |
10 | GTEx | Artery Tibial | PIGU | 0.05 | 0.05 | lasso | 3 | 0.04 | 2.2e-04 | -5.44 | 5.5 | 3.1e-08 | 0.00 | 0.07 | 0.91 | FALSE |
11 | GTEx | Artery Tibial | BAK1P1 | 0.08 | 0.03 | lasso | 2 | 0.06 | 1.4e-05 | 7.28 | 7.2 | 6.2e-13 | 0.00 | 0.24 | 0.07 | FALSE |
12 | GTEx | Brain Caudate basal ganglia | COX4I2 | 0.24 | 0.03 | lasso | 6 | 0.05 | 1.1e-02 | -8.90 | -8.3 | 6.8e-17 | 0.54 | 0.13 | 0.53 | FALSE |
13 | GTEx | Brain Cerebellum | PROCR | 0.29 | 0.01 | enet | 34 | 0.13 | 1.1e-04 | -2.25 | 5.5 | 3.6e-08 | -0.04 | 0.04 | 0.07 | FALSE |
14 | GTEx | Brain Cerebellum | CTD-2514C3.1 | 0.21 | 0.05 | lasso | 5 | 0.15 | 3.5e-05 | -7.39 | 8.1 | 5.7e-16 | -0.16 | 0.05 | 0.79 | TRUE |
15 | GTEx | Brain Cortex | GSS | 0.14 | 0.02 | lasso | 3 | 0.00 | 3.7e-01 | -5.44 | 5.4 | 5.6e-08 | 0.00 | 0.06 | 0.56 | FALSE |
16 | GTEx | Brain Frontal Cortex BA9 | MAP1LC3A | 0.18 | 0.17 | lasso | 4 | 0.16 | 5.3e-05 | -5.04 | 5.4 | 5.9e-08 | 0.02 | 0.12 | 0.78 | FALSE |
17 | GTEx | Brain Frontal Cortex BA9 | NCOA6 | 0.13 | 0.00 | enet | 30 | 0.06 | 1.3e-02 | -3.75 | 5.6 | 1.9e-08 | -0.03 | 0.08 | 0.57 | FALSE |
18 | GTEx | Brain Nucleus accumbens basal ganglia | COX4I2 | 0.13 | 0.14 | lasso | 5 | 0.05 | 2.2e-02 | -9.59 | -10.2 | 1.9e-24 | 0.96 | 0.04 | 0.70 | FALSE |
19 | GTEx | Breast Mammary Tissue | NCOA6 | 0.12 | 0.02 | enet | 35 | 0.04 | 4.5e-03 | -5.00 | 5.8 | 8.4e-09 | -0.02 | 0.12 | 0.70 | FALSE |
20 | GTEx | Breast Mammary Tissue | VN1R108P | 0.11 | 0.03 | enet | 16 | 0.05 | 1.7e-03 | -6.89 | -7.3 | 2.3e-13 | 0.14 | 0.06 | 0.86 | FALSE |
21 | GTEx | Breast Mammary Tissue (Male) | MAP1LC3A | 0.13 | 0.05 | enet | 12 | 0.00 | 3.4e-01 | -5.58 | 5.3 | 1.2e-07 | 0.01 | 0.06 | 0.24 | FALSE |
22 | GTEx | Breast Mammary Tissue (Male) | ZNF337 | 0.39 | 0.03 | enet | 16 | 0.13 | 6.3e-04 | 0.67 | 5.3 | 1.2e-07 | -0.05 | 0.08 | 0.20 | FALSE |
23 | GTEx | Breast Mammary Tissue (Female) | VN1R108P | 0.15 | 0.11 | lasso | 6 | 0.09 | 1.5e-03 | -7.51 | -7.7 | 1.0e-14 | 0.13 | 0.08 | 0.51 | FALSE |
24 | GTEx | Cells EBV-transformed lymphocytes | CTD-2514C3.1 | 0.17 | 0.03 | enet | 9 | 0.08 | 1.1e-03 | -7.87 | 5.9 | 2.8e-09 | -0.09 | 0.03 | 0.58 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | GINS1 | 0.04 | 0.01 | lasso | 3 | 0.01 | 5.2e-02 | -7.51 | -5.3 | 9.2e-08 | 0.17 | 0.07 | 0.89 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | HM13 | 0.07 | 0.05 | lasso | 4 | 0.06 | 3.9e-05 | -8.58 | -8.6 | 7.0e-18 | 0.68 | 0.71 | 0.21 | FALSE |
27 | GTEx | Cells Transformed fibroblasts | FRG1B | 0.05 | 0.04 | lasso | 3 | 0.03 | 2.2e-03 | -4.89 | -5.6 | 1.8e-08 | 0.47 | 0.14 | 0.48 | FALSE |
28 | GTEx | Cells Transformed fibroblasts | CTD-2514C3.1 | 0.06 | 0.03 | lasso | 3 | 0.01 | 6.9e-02 | -6.34 | 6.3 | 2.1e-10 | -0.07 | 0.05 | 0.13 | TRUE |
29 | GTEx | Cells Transformed fibroblasts | HM13-AS1 | 0.04 | 0.01 | lasso | 3 | 0.01 | 1.0e-01 | -8.57 | 9.1 | 7.6e-20 | -0.75 | 0.13 | 0.44 | FALSE |
30 | GTEx | Colon Sigmoid | ENTPD6 | 0.17 | 0.12 | enet | 12 | 0.14 | 1.1e-05 | 4.27 | -5.2 | 1.9e-07 | 0.04 | 0.51 | 0.08 | FALSE |
31 | GTEx | Colon Transverse | MYH7B | 0.14 | 0.01 | enet | 20 | 0.01 | 8.4e-02 | 1.81 | 5.4 | 7.8e-08 | -0.02 | 0.12 | 0.50 | FALSE |
32 | GTEx | Colon Transverse | DUSP15 | 0.33 | 0.06 | lasso | 6 | 0.14 | 2.2e-07 | -7.04 | 7.6 | 4.0e-14 | -0.54 | 0.23 | 0.46 | FALSE |
33 | GTEx | Esophagus Mucosa | PYGB | 0.12 | 0.01 | enet | 19 | 0.02 | 9.7e-03 | -6.89 | -5.4 | 5.4e-08 | 0.01 | 0.02 | 0.85 | FALSE |
34 | GTEx | Esophagus Mucosa | HM13 | 0.06 | 0.01 | lasso | 5 | 0.00 | 2.7e-01 | -7.43 | -7.3 | 3.5e-13 | 0.82 | 0.04 | 0.67 | FALSE |
35 | GTEx | Esophagus Mucosa | NCOA6 | 0.10 | 0.06 | lasso | 16 | 0.09 | 8.0e-07 | -4.33 | 5.3 | 1.3e-07 | -0.01 | 0.83 | 0.14 | FALSE |
36 | GTEx | Esophagus Mucosa | RP4-614O4.12 | 0.12 | 0.07 | enet | 16 | 0.06 | 6.7e-05 | -4.07 | -5.2 | 2.3e-07 | 0.00 | 0.10 | 0.77 | FALSE |
37 | GTEx | Esophagus Muscularis | PYGB | 0.22 | 0.19 | enet | 13 | 0.21 | 1.1e-12 | -7.27 | -6.9 | 6.3e-12 | 0.10 | 0.02 | 0.98 | FALSE |
38 | GTEx | Esophagus Muscularis | COX4I2 | 0.09 | 0.12 | enet | 10 | 0.09 | 4.1e-06 | -8.81 | -9.3 | 2.1e-20 | 0.92 | 0.03 | 0.97 | FALSE |
39 | GTEx | Esophagus Muscularis | CTD-2514C3.1 | 0.16 | 0.07 | lasso | 7 | 0.10 | 6.3e-07 | -6.34 | 7.2 | 6.8e-13 | -0.11 | 0.18 | 0.80 | FALSE |
40 | GTEx | Heart Atrial Appendage | FRG1B | 0.07 | 0.02 | enet | 10 | 0.01 | 1.7e-01 | -4.89 | -5.2 | 1.8e-07 | 0.26 | 0.18 | 0.14 | FALSE |
41 | GTEx | Heart Left Ventricle | COX4I2 | 0.06 | 0.05 | lasso | 6 | 0.01 | 6.2e-02 | -7.36 | -8.9 | 6.0e-19 | 0.94 | 0.03 | 0.95 | FALSE |
42 | GTEx | Heart Left Ventricle | NCOA6 | 0.09 | 0.01 | enet | 19 | 0.05 | 1.1e-03 | -3.73 | 5.8 | 5.9e-09 | -0.03 | 0.37 | 0.32 | TRUE |
43 | GTEx | Lung | COX4I2 | 0.05 | 0.01 | enet | 6 | 0.03 | 1.8e-03 | -8.82 | -10.1 | 6.1e-24 | 0.89 | 0.08 | 0.78 | FALSE |
44 | GTEx | Lung | FRG1B | 0.08 | 0.04 | enet | 15 | 0.05 | 7.9e-05 | -4.94 | -5.8 | 6.9e-09 | 0.34 | 0.94 | 0.03 | FALSE |
45 | GTEx | Lung | CTD-2514C3.1 | 0.05 | 0.03 | lasso | 3 | 0.04 | 2.8e-04 | -6.34 | 6.7 | 2.8e-11 | -0.08 | 0.30 | 0.42 | FALSE |
46 | GTEx | Muscle Skeletal | HM13 | 0.05 | 0.01 | enet | 15 | 0.05 | 2.1e-05 | -4.51 | 8.4 | 2.8e-17 | -0.71 | 0.03 | 0.93 | FALSE |
47 | GTEx | Muscle Skeletal | COX4I2 | 0.10 | 0.08 | lasso | 4 | 0.09 | 3.5e-09 | -8.81 | -9.4 | 7.2e-21 | 0.93 | 0.04 | 0.96 | FALSE |
48 | GTEx | Muscle Skeletal | FRG1B | 0.06 | 0.09 | enet | 12 | 0.08 | 1.2e-08 | -4.98 | -6.2 | 7.0e-10 | 0.31 | 1.00 | 0.00 | FALSE |
49 | GTEx | Nerve Tibial | COX4I2 | 0.13 | 0.10 | lasso | 9 | 0.07 | 6.6e-06 | -8.81 | -8.3 | 1.2e-16 | 0.84 | 0.04 | 0.96 | FALSE |
50 | GTEx | Nerve Tibial | NCOA6 | 0.24 | 0.12 | enet | 50 | 0.20 | 5.2e-14 | 3.36 | 5.4 | 5.6e-08 | -0.02 | 0.95 | 0.04 | TRUE |
51 | GTEx | Nerve Tibial | CTD-2514C3.1 | 0.11 | 0.09 | lasso | 4 | 0.07 | 1.8e-05 | -6.34 | 5.5 | 2.9e-08 | -0.06 | 0.72 | 0.03 | FALSE |
52 | GTEx | Skin Not Sun Exposed Suprapubic | COX4I2 | 0.08 | 0.05 | lasso | 4 | 0.05 | 1.5e-03 | -9.59 | -9.3 | 1.4e-20 | 0.94 | 0.03 | 0.96 | FALSE |
53 | GTEx | Skin Not Sun Exposed Suprapubic | ENTPD6 | 0.12 | 0.09 | lasso | 2 | 0.07 | 1.1e-04 | 5.66 | -5.7 | 1.5e-08 | -0.07 | 0.30 | 0.08 | FALSE |
54 | GTEx | Skin Sun Exposed Lower leg | TPX2 | 0.05 | 0.00 | lasso | 3 | 0.00 | 5.5e-01 | -6.17 | -7.8 | 4.7e-15 | 0.81 | 0.11 | 0.54 | FALSE |
55 | GTEx | Skin Sun Exposed Lower leg | PYGB | 0.11 | 0.10 | lasso | 4 | 0.09 | 1.2e-07 | 5.37 | -5.3 | 9.1e-08 | -0.07 | 0.99 | 0.00 | FALSE |
56 | GTEx | Skin Sun Exposed Lower leg | COX4I2 | 0.03 | 0.04 | enet | 6 | 0.04 | 3.6e-04 | -8.82 | -8.8 | 1.7e-18 | 0.85 | 0.16 | 0.77 | FALSE |
57 | GTEx | Skin Sun Exposed Lower leg | FRG1B | 0.03 | 0.00 | enet | 7 | 0.01 | 9.4e-02 | -4.89 | -6.4 | 1.3e-10 | 0.43 | 0.04 | 0.35 | FALSE |
58 | GTEx | Skin Sun Exposed Lower leg | ENTPD6 | 0.11 | 0.07 | lasso | 9 | 0.06 | 1.6e-05 | 5.37 | -5.8 | 7.4e-09 | -0.04 | 0.94 | 0.00 | FALSE |
59 | GTEx | Skin Sun Exposed Lower leg | HM13-AS1 | 0.07 | 0.07 | enet | 11 | 0.05 | 5.3e-05 | -9.68 | 10.2 | 1.6e-24 | -0.83 | 0.02 | 0.98 | FALSE |
60 | GTEx | Small Intestine Terminal Ileum | RSL24D1P6 | 0.18 | -0.01 | enet | 17 | 0.00 | 3.2e-01 | 3.62 | 7.0 | 2.2e-12 | -0.02 | 0.11 | 0.09 | FALSE |
61 | GTEx | Stomach | FRG1B | 0.05 | 0.07 | lasso | 2 | 0.04 | 6.5e-03 | -6.15 | -6.4 | 1.2e-10 | 0.58 | 0.03 | 0.55 | TRUE |
62 | GTEx | Testis | PIGU | 0.38 | 0.48 | lasso | 6 | 0.47 | 1.9e-23 | -5.44 | 5.6 | 2.3e-08 | 0.00 | 0.06 | 0.94 | FALSE |
63 | GTEx | Testis | DUSP15 | 0.10 | 0.01 | lasso | 8 | 0.00 | 3.1e-01 | -3.29 | -6.0 | 1.4e-09 | 0.53 | 0.07 | 0.14 | FALSE |
64 | GTEx | Thyroid | PYGB | 0.10 | 0.09 | lasso | 2 | 0.09 | 4.4e-07 | 5.66 | -5.5 | 4.4e-08 | -0.07 | 0.98 | 0.00 | FALSE |
65 | GTEx | Thyroid | COX4I2 | 0.04 | 0.05 | lasso | 2 | 0.03 | 1.8e-03 | -8.82 | -8.7 | 2.6e-18 | 0.87 | 0.08 | 0.83 | FALSE |
66 | GTEx | Vagina | PXMP4 | 0.29 | 0.11 | lasso | 4 | 0.17 | 1.0e-04 | 4.84 | -5.2 | 2.1e-07 | 0.02 | 0.04 | 0.20 | FALSE |
67 | GTEx | Vagina | COX4I2 | 0.17 | 0.12 | lasso | 2 | 0.16 | 1.5e-04 | -8.81 | -8.2 | 2.5e-16 | 0.75 | 0.03 | 0.88 | FALSE |
68 | GTEx | Vagina | RSL24D1P6 | 0.44 | -0.01 | lasso | 13 | 0.00 | 2.5e-01 | -7.49 | 7.9 | 2.1e-15 | -0.11 | 0.06 | 0.09 | FALSE |
69 | GTEx | Whole Blood | HM13 | 0.05 | 0.05 | lasso | 4 | 0.05 | 1.4e-05 | -8.62 | -8.0 | 9.7e-16 | 0.67 | 0.83 | 0.16 | FALSE |
70 | GTEx | Whole Blood | RP5-1085F17.3 | 0.16 | 0.01 | enet | 29 | 0.07 | 8.2e-07 | -2.03 | 6.4 | 1.8e-10 | -0.04 | 0.53 | 0.32 | FALSE |
71 | METSIM | Adipose | COMMD7 | 0.04 | 0.02 | bslmm | 419 | 0.02 | 1.7e-03 | 1.52 | 5.3 | 1.1e-07 | 0.05 | 0.12 | 0.60 | TRUE |
72 | NTR | Blood | C20orf160 | 0.01 | 0.00 | bslmm | 305 | 0.00 | 8.0e-03 | -8.82 | 11.8 | 6.7e-32 | -0.74 | 0.03 | 0.61 | TRUE |
73 | NTR | Blood | HM13 | 0.03 | 0.05 | lasso | 6 | 0.05 | 2.2e-15 | -8.64 | -8.8 | 9.9e-19 | 0.70 | 1.00 | 0.00 | FALSE |
74 | ROSMAP | Brain Pre-frontal Cortex | HM13 | 0.08 | 0.14 | lasso | 4 | 0.15 | 3.7e-19 | -8.44 | 9.0 | 2.5e-19 | -0.82 | 0.91 | 0.09 | FALSE |
75 | ROSMAP | Brain Pre-frontal Cortex | COX4I2 | 0.12 | 0.04 | enet | 18 | 0.07 | 7.8e-10 | -6.56 | -5.3 | 1.3e-07 | 0.64 | 0.83 | 0.17 | FALSE |
76 | ROSMAP | Brain Pre-frontal Cortex | ACSS2 | 0.07 | 0.06 | blup | 353 | 0.07 | 9.4e-10 | -4.33 | 5.4 | 5.3e-08 | -0.01 | 0.19 | 0.80 | FALSE |
77 | ROSMAP | Brain Pre-frontal Cortex | FRG1B | 0.06 | 0.09 | lasso | 4 | 0.09 | 4.2e-11 | -4.65 | -5.5 | 5.0e-08 | 0.30 | 1.00 | 0.00 | TRUE |
78 | ROSMAP | Brain Pre-frontal Cortex | BAK1P1 | 0.30 | 0.20 | lasso | 6 | 0.22 | 5.7e-28 | -8.87 | 9.0 | 2.1e-19 | 0.05 | 0.82 | 0.18 | FALSE |
79 | ROSMAP | Brain Pre-frontal Cortex | C20orf203 | 0.35 | 0.25 | enet | 14 | 0.27 | 1.8e-34 | -8.78 | -9.3 | 8.8e-21 | -0.07 | 0.90 | 0.10 | FALSE |
80 | ROSMAP | Brain Pre-frontal Cortex | NCOA6 | 0.07 | 0.08 | blup | 365 | 0.09 | 1.9e-11 | -3.73 | 5.2 | 2.1e-07 | -0.02 | 0.88 | 0.11 | FALSE |
81 | ROSMAP | Brain Pre-frontal Cortex | RP4-610C12.4 | 0.13 | 0.17 | lasso | 7 | 0.20 | 2.4e-25 | -6.11 | -5.3 | 1.2e-07 | 0.20 | 0.98 | 0.02 | FALSE |
82 | ROSMAP | Brain Pre-frontal Cortex | VN1R108P | 0.05 | 0.01 | blup | 217 | 0.02 | 2.1e-03 | -6.34 | -7.8 | 6.0e-15 | 0.09 | 0.06 | 0.21 | FALSE |
83 | YFS | Blood | ASXL1 | 0.03 | 0.02 | blup | 366 | 0.02 | 6.0e-08 | 3.88 | 6.8 | 1.4e-11 | -0.05 | 0.78 | 0.22 | FALSE |
84 | YFS | Blood | HM13 | 0.08 | 0.10 | lasso | 6 | 0.10 | 3.6e-31 | -7.84 | -8.4 | 4.6e-17 | 0.72 | 0.99 | 0.01 | FALSE |
85 | YFS | Blood | NCOA6 | 0.03 | 0.03 | blup | 368 | 0.03 | 6.9e-10 | -3.72 | 5.3 | 1.0e-07 | -0.01 | 0.93 | 0.06 | FALSE |
86 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C20orf203 | 0.02 | 0.01 | enet | 4 | 0.02 | 1.6e-04 | -8.78 | -8.6 | 1.1e-17 | -0.01 | 0.18 | 0.07 | FALSE |
87 | The Cancer Genome Atlas | Breast Invasive Carcinoma | COX4I2 | 0.08 | 0.06 | enet | 7 | 0.06 | 3.3e-13 | -6.56 | -6.5 | 5.9e-11 | 0.65 | 1.00 | 0.00 | FALSE |
88 | The Cancer Genome Atlas | Colon Adenocarcinoma | PYGB | 0.09 | 0.07 | lasso | 3 | 0.06 | 3.4e-04 | 5.37 | -5.4 | 6.4e-08 | -0.07 | 0.16 | 0.03 | FALSE |
89 | The Cancer Genome Atlas | Esophageal Carcinoma | MAP1LC3A | 0.62 | 0.01 | enet | 24 | 0.13 | 5.9e-05 | 4.65 | 6.0 | 2.5e-09 | 0.03 | 0.01 | 0.34 | FALSE |
90 | The Cancer Genome Atlas | Glioblastoma Multiforme | ID1 | 0.12 | 0.01 | enet | 4 | 0.05 | 1.3e-02 | -7.84 | 7.5 | 4.4e-14 | -0.64 | 0.01 | 0.34 | FALSE |
91 | The Cancer Genome Atlas | Glioblastoma Multiforme | MYLK2 | 0.30 | 0.10 | blup | 43 | 0.16 | 1.3e-05 | -9.26 | 7.3 | 4.0e-13 | -0.69 | 0.01 | 0.86 | FALSE |
92 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HM13 | 0.06 | 0.03 | blup | 48 | 0.07 | 3.0e-08 | -8.59 | -8.2 | 2.3e-16 | 0.70 | 0.04 | 0.96 | FALSE |
93 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PYGB | 0.06 | 0.03 | blup | 74 | 0.02 | 9.8e-04 | 5.66 | -5.2 | 1.5e-07 | -0.01 | 0.18 | 0.03 | FALSE |
94 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | COX4I2 | 0.06 | 0.03 | lasso | 3 | 0.03 | 1.5e-04 | -6.56 | -8.4 | 5.7e-17 | 0.86 | 0.03 | 0.93 | FALSE |
95 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DUSP15 | 0.05 | 0.01 | blup | 44 | 0.01 | 7.7e-03 | -9.65 | 7.3 | 3.8e-13 | -0.66 | 0.01 | 0.84 | FALSE |
96 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC100134868 | 0.02 | 0.01 | blup | 11 | 0.01 | 2.1e-02 | -3.91 | 5.7 | 1.4e-08 | -0.07 | 0.01 | 0.30 | FALSE |
97 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PYGB | 0.14 | 0.04 | enet | 12 | 0.07 | 5.1e-08 | 4.74 | -6.0 | 2.4e-09 | -0.06 | 0.61 | 0.36 | FALSE |
98 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PYGB | 0.31 | 0.16 | lasso | 3 | 0.15 | 3.8e-09 | 5.37 | -5.2 | 2.2e-07 | -0.06 | 0.99 | 0.00 | FALSE |
99 | The Cancer Genome Atlas | Brain Lower Grade Glioma | BCL2L1 | 0.05 | 0.03 | enet | 8 | 0.02 | 9.4e-04 | -7.47 | -5.9 | 3.0e-09 | 0.58 | 0.10 | 0.19 | FALSE |
100 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C20orf203 | 0.06 | 0.06 | blup | 48 | 0.05 | 1.6e-06 | 7.20 | -10.5 | 1.1e-25 | -0.03 | 0.87 | 0.03 | TRUE |
101 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYLK2 | 0.06 | 0.02 | blup | 43 | 0.04 | 8.0e-06 | -9.65 | 8.6 | 1.0e-17 | -0.76 | 0.01 | 0.99 | FALSE |
102 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PIGU | 0.03 | 0.02 | blup | 73 | 0.02 | 3.7e-03 | -5.11 | 5.6 | 1.8e-08 | 0.01 | 0.01 | 0.91 | FALSE |
103 | The Cancer Genome Atlas | Lung Adenocarcinoma | COX4I2 | 0.04 | 0.06 | enet | 6 | 0.05 | 9.8e-07 | -8.90 | -9.1 | 1.3e-19 | 0.75 | 0.40 | 0.59 | FALSE |
104 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | COX4I2 | 0.04 | 0.03 | blup | 25 | 0.04 | 2.5e-05 | -7.36 | -8.8 | 9.6e-19 | 0.89 | 0.01 | 0.99 | FALSE |
105 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | HM13 | 0.05 | 0.01 | blup | 48 | 0.02 | 8.1e-04 | -8.90 | -8.7 | 3.8e-18 | 0.65 | 0.01 | 0.98 | FALSE |
106 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ITCH | 0.14 | 0.04 | lasso | 4 | 0.03 | 3.8e-03 | -6.18 | -5.7 | 1.5e-08 | -0.01 | 0.00 | 0.79 | FALSE |
107 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LOC100134868 | 0.07 | 0.02 | blup | 11 | 0.03 | 2.1e-02 | -3.91 | 6.0 | 1.9e-09 | -0.16 | 0.00 | 0.45 | FALSE |
108 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C20orf203 | 0.04 | 0.03 | blup | 48 | 0.02 | 3.7e-03 | -6.61 | -7.9 | 2.0e-15 | -0.10 | 0.04 | 0.08 | FALSE |
109 | The Cancer Genome Atlas | Prostate Adenocarcinoma | COX4I2 | 0.07 | 0.07 | lasso | 5 | 0.07 | 2.0e-07 | -8.82 | -8.8 | 1.2e-18 | 0.86 | 0.20 | 0.80 | FALSE |
110 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ENTPD6 | 0.14 | 0.00 | enet | 19 | 0.03 | 4.5e-04 | 5.37 | -6.9 | 5.3e-12 | 0.07 | 0.25 | 0.06 | TRUE |
111 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PYGB | 0.21 | 0.13 | enet | 5 | 0.17 | 2.0e-17 | 5.37 | -6.2 | 6.0e-10 | -0.09 | 1.00 | 0.00 | TRUE |
112 | The Cancer Genome Atlas | Rectum Adenocarcinoma | DUSP15 | 0.17 | 0.11 | blup | 44 | 0.13 | 6.6e-04 | -7.51 | 7.0 | 2.5e-12 | -0.74 | 0.02 | 0.41 | FALSE |
113 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | LOC100134868 | 0.10 | 0.06 | blup | 11 | 0.06 | 8.7e-03 | -3.87 | 5.5 | 3.8e-08 | -0.13 | 0.00 | 0.52 | FALSE |
114 | The Cancer Genome Atlas | Stomach Adenocarcinoma | COX4I2 | 0.09 | 0.03 | blup | 25 | 0.03 | 3.8e-03 | -8.81 | -7.9 | 3.0e-15 | 0.88 | 0.00 | 0.71 | FALSE |
115 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PIGU | 0.10 | 0.10 | lasso | 2 | 0.10 | 2.8e-04 | -4.94 | 5.2 | 2.0e-07 | 0.01 | 0.03 | 0.90 | FALSE |
116 | The Cancer Genome Atlas | Thyroid Carcinoma | C20orf203 | 0.14 | 0.04 | enet | 18 | 0.06 | 1.1e-06 | -8.87 | -6.2 | 4.2e-10 | -0.09 | 0.57 | 0.16 | FALSE |
117 | The Cancer Genome Atlas | Thyroid Carcinoma | COX4I2 | 0.02 | 0.03 | lasso | 2 | 0.03 | 1.0e-03 | -8.82 | -8.8 | 1.1e-18 | 0.87 | 0.02 | 0.60 | FALSE |
118 | The Cancer Genome Atlas | Thyroid Carcinoma | MAP1LC3A | 0.04 | 0.00 | blup | 45 | 0.01 | 1.5e-02 | 3.36 | 5.4 | 5.4e-08 | 0.00 | 0.02 | 0.50 | FALSE |