Best TWAS P=4.74e-20 · Best GWAS P=3.16e-18 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DAP3 | 0.03 | 0.01 | blup | 248 | 0.02 | 1.5e-03 | 7.2 | 6.7 | 2.5e-11 | 0.45 | 0.28 | 0.51 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | FDPS | 0.04 | 0.04 | lasso | 2 | 0.04 | 3.3e-05 | 5.2 | -5.4 | 8.0e-08 | -0.42 | 0.87 | 0.01 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | GBAP1 | 0.04 | 0.03 | blup | 337 | 0.03 | 8.6e-05 | -8.5 | -8.5 | 2.0e-17 | -0.83 | 0.02 | 0.98 | TRUE |
4 | GTEx | Adipose Subcutaneous | RIT1 | 0.14 | 0.06 | lasso | 5 | 0.08 | 8.8e-07 | 7.9 | -7.8 | 7.2e-15 | -0.37 | 0.02 | 0.98 | FALSE |
5 | GTEx | Adipose Subcutaneous | GBAP1 | 0.10 | 0.10 | lasso | 3 | 0.08 | 6.1e-07 | -7.1 | -7.1 | 1.4e-12 | -0.71 | 0.96 | 0.04 | FALSE |
6 | GTEx | Adipose Subcutaneous | GBA | 0.08 | 0.03 | lasso | 3 | 0.02 | 8.9e-03 | -7.1 | -7.6 | 2.7e-14 | -0.72 | 0.23 | 0.18 | FALSE |
7 | GTEx | Adipose Visceral Omentum | RIT1 | 0.06 | 0.02 | enet | 10 | 0.03 | 1.4e-02 | 7.8 | -8.3 | 1.1e-16 | -0.38 | 0.02 | 0.95 | FALSE |
8 | GTEx | Adipose Visceral Omentum | GBAP1 | 0.07 | 0.11 | enet | 5 | 0.10 | 5.0e-06 | -6.9 | -7.1 | 1.1e-12 | -0.73 | 0.29 | 0.61 | FALSE |
9 | GTEx | Adrenal Gland | RIT1 | 0.24 | 0.03 | lasso | 4 | 0.04 | 1.8e-02 | 6.9 | -6.7 | 2.4e-11 | -0.37 | 0.07 | 0.17 | FALSE |
10 | GTEx | Adrenal Gland | HCN3 | 0.13 | 0.09 | lasso | 2 | 0.05 | 7.1e-03 | 5.3 | -5.3 | 1.1e-07 | -0.39 | 0.12 | 0.05 | FALSE |
11 | GTEx | Artery Aorta | RIT1 | 0.12 | 0.13 | lasso | 7 | 0.08 | 2.9e-05 | 5.4 | -6.3 | 3.6e-10 | -0.36 | 0.02 | 0.98 | FALSE |
12 | GTEx | Artery Aorta | GBAP1 | 0.31 | 0.36 | enet | 22 | 0.39 | 1.0e-22 | -6.9 | -7.5 | 4.3e-14 | -0.76 | 0.99 | 0.01 | FALSE |
13 | GTEx | Artery Coronary | ASH1L | 0.15 | -0.01 | enet | 25 | 0.00 | 5.1e-01 | 5.4 | -5.2 | 2.6e-07 | -0.37 | 0.07 | 0.09 | FALSE |
14 | GTEx | Artery Tibial | RIT1 | 0.09 | 0.04 | lasso | 4 | 0.04 | 1.9e-04 | 5.4 | -5.7 | 9.8e-09 | -0.38 | 0.04 | 0.95 | FALSE |
15 | GTEx | Artery Tibial | GBAP1 | 0.21 | 0.26 | lasso | 7 | 0.26 | 1.3e-20 | -6.9 | -7.6 | 2.7e-14 | -0.84 | 0.93 | 0.07 | TRUE |
16 | GTEx | Brain Cerebellar Hemisphere | THBS3 | 0.19 | 0.26 | lasso | 2 | 0.24 | 8.6e-07 | -6.8 | 6.9 | 7.1e-12 | 0.75 | 0.13 | 0.74 | FALSE |
17 | GTEx | Brain Cerebellar Hemisphere | EFNA1 | 0.33 | 0.04 | enet | 7 | 0.08 | 4.5e-03 | -7.3 | -7.6 | 2.3e-14 | -0.79 | 0.04 | 0.43 | FALSE |
18 | GTEx | Brain Cerebellum | MSTO1 | 0.15 | 0.06 | enet | 13 | 0.07 | 4.0e-03 | 7.8 | 8.1 | 7.2e-16 | 0.91 | 0.02 | 0.92 | FALSE |
19 | GTEx | Brain Cerebellum | HCN3 | 0.16 | 0.05 | lasso | 4 | 0.04 | 3.1e-02 | 5.0 | -5.1 | 2.8e-07 | -0.50 | 0.14 | 0.28 | FALSE |
20 | GTEx | Brain Cerebellum | THBS3 | 0.17 | 0.15 | enet | 6 | 0.16 | 2.0e-05 | -6.8 | 7.3 | 2.2e-13 | 0.92 | 0.02 | 0.96 | FALSE |
21 | GTEx | Brain Cerebellum | EFNA1 | 0.20 | 0.09 | enet | 13 | 0.06 | 9.2e-03 | 7.8 | -8.2 | 3.5e-16 | -0.91 | 0.04 | 0.91 | FALSE |
22 | GTEx | Brain Cortex | GBAP1 | 0.25 | 0.14 | enet | 25 | 0.23 | 4.7e-07 | -7.1 | 8.2 | 3.5e-16 | 0.80 | 0.06 | 0.92 | FALSE |
23 | GTEx | Brain Frontal Cortex BA9 | MTX1P1 | 0.20 | 0.05 | enet | 21 | 0.01 | 1.5e-01 | 6.3 | 6.7 | 2.8e-11 | 0.74 | 0.05 | 0.47 | FALSE |
24 | GTEx | Brain Nucleus accumbens basal ganglia | DCST2 | 0.28 | 0.04 | lasso | 5 | 0.13 | 2.0e-04 | 4.5 | 5.7 | 1.3e-08 | 0.25 | 0.15 | 0.05 | FALSE |
25 | GTEx | Breast Mammary Tissue | GBAP1 | 0.15 | 0.17 | lasso | 2 | 0.15 | 5.2e-08 | -6.9 | -6.9 | 4.2e-12 | -0.74 | 0.57 | 0.42 | FALSE |
26 | GTEx | Breast Mammary Tissue (Male) | GBAP1 | 0.28 | 0.11 | enet | 18 | 0.08 | 7.3e-03 | -6.8 | -5.2 | 2.7e-07 | -0.58 | 0.04 | 0.35 | FALSE |
27 | GTEx | Breast Mammary Tissue (Female) | GBAP1 | 0.12 | 0.02 | enet | 6 | 0.02 | 1.0e-01 | -8.5 | -8.5 | 2.0e-17 | -0.82 | 0.03 | 0.68 | FALSE |
28 | GTEx | Breast Mammary Tissue (Female) | RP11-336K24.12 | 0.07 | -0.01 | lasso | 1 | -0.01 | 6.7e-01 | 6.0 | 6.0 | 2.5e-09 | 0.29 | 0.04 | 0.10 | FALSE |
29 | GTEx | Cells EBV-transformed lymphocytes | GBAP1 | 0.21 | 0.05 | lasso | 3 | 0.06 | 4.5e-03 | -7.1 | -8.0 | 1.0e-15 | -0.66 | 0.20 | 0.61 | FALSE |
30 | GTEx | Cells Transformed fibroblasts | ADAM15 | 0.14 | 0.01 | lasso | 6 | 0.02 | 9.3e-03 | 5.0 | -8.0 | 1.3e-15 | -0.61 | 0.08 | 0.88 | FALSE |
31 | GTEx | Cells Transformed fibroblasts | RIT1 | 0.15 | 0.18 | lasso | 4 | 0.18 | 2.7e-13 | 6.9 | -7.3 | 3.4e-13 | -0.40 | 0.74 | 0.26 | FALSE |
32 | GTEx | Cells Transformed fibroblasts | HCN3 | 0.05 | 0.05 | lasso | 5 | 0.06 | 3.8e-05 | 5.4 | -5.4 | 7.6e-08 | -0.44 | 0.86 | 0.03 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | GBAP1 | 0.18 | 0.16 | lasso | 6 | 0.15 | 1.6e-11 | -6.9 | -7.6 | 2.8e-14 | -0.77 | 0.80 | 0.20 | FALSE |
34 | GTEx | Cells Transformed fibroblasts | SLC50A1 | 0.08 | 0.07 | lasso | 6 | 0.07 | 3.9e-06 | 7.8 | 7.4 | 1.1e-13 | 0.94 | 0.04 | 0.96 | FALSE |
35 | GTEx | Colon Sigmoid | GBAP1 | 0.16 | 0.13 | enet | 8 | 0.14 | 8.4e-06 | -6.9 | -6.2 | 5.4e-10 | -0.73 | 0.06 | 0.91 | FALSE |
36 | GTEx | Colon Transverse | RIT1 | 0.10 | 0.00 | enet | 4 | 0.01 | 9.1e-02 | 5.1 | -6.6 | 3.6e-11 | -0.36 | 0.02 | 0.70 | TRUE |
37 | GTEx | Colon Transverse | GBAP1 | 0.13 | 0.15 | lasso | 5 | 0.11 | 6.4e-06 | -6.9 | -7.4 | 1.6e-13 | -0.74 | 0.31 | 0.69 | FALSE |
38 | GTEx | Colon Transverse | THBS3 | 0.11 | 0.09 | lasso | 4 | 0.09 | 5.9e-05 | -6.9 | 7.3 | 3.1e-13 | 0.72 | 0.03 | 0.94 | TRUE |
39 | GTEx | Colon Transverse | GBA | 0.06 | 0.09 | enet | 8 | 0.08 | 7.9e-05 | 6.3 | -7.2 | 4.6e-13 | -0.71 | 0.56 | 0.16 | FALSE |
40 | GTEx | Colon Transverse | MSTO2P | 0.21 | 0.05 | lasso | 11 | 0.08 | 7.7e-05 | 4.9 | -5.1 | 3.1e-07 | -0.32 | 0.87 | 0.01 | FALSE |
41 | GTEx | Colon Transverse | RP11-263K19.4 | 0.14 | 0.09 | enet | 10 | 0.10 | 1.2e-05 | -6.8 | 6.4 | 1.3e-10 | 0.55 | 0.06 | 0.85 | FALSE |
42 | GTEx | Esophagus Gastroesophageal Junction | GBAP1 | 0.22 | 0.19 | enet | 6 | 0.17 | 6.8e-07 | -7.1 | -6.8 | 9.0e-12 | -0.70 | 0.73 | 0.19 | FALSE |
43 | GTEx | Esophagus Gastroesophageal Junction | GBA | 0.13 | 0.12 | lasso | 6 | 0.11 | 8.7e-05 | 5.3 | -5.9 | 3.3e-09 | -0.46 | 0.53 | 0.10 | FALSE |
44 | GTEx | Esophagus Mucosa | ARHGEF2 | 0.09 | 0.01 | lasso | 4 | 0.01 | 8.4e-02 | 6.3 | -7.0 | 2.5e-12 | -0.30 | 0.03 | 0.88 | FALSE |
45 | GTEx | Esophagus Mucosa | RIT1 | 0.06 | 0.04 | lasso | 8 | 0.03 | 2.9e-03 | 5.1 | -6.6 | 3.7e-11 | -0.39 | 0.06 | 0.91 | FALSE |
46 | GTEx | Esophagus Mucosa | GBAP1 | 0.12 | 0.12 | enet | 22 | 0.09 | 1.7e-06 | -6.9 | -7.7 | 1.2e-14 | -0.78 | 0.48 | 0.52 | FALSE |
47 | GTEx | Esophagus Mucosa | THBS3 | 0.15 | 0.15 | lasso | 2 | 0.13 | 6.8e-09 | -6.9 | 6.9 | 4.8e-12 | 0.75 | 0.24 | 0.76 | FALSE |
48 | GTEx | Esophagus Mucosa | GBA | 0.28 | 0.30 | enet | 26 | 0.34 | 4.2e-23 | 6.1 | -6.8 | 7.2e-12 | -0.66 | 1.00 | 0.00 | FALSE |
49 | GTEx | Esophagus Mucosa | MSTO2P | 0.04 | 0.06 | lasso | 4 | 0.03 | 3.4e-03 | 4.9 | -5.3 | 1.4e-07 | -0.36 | 0.46 | 0.03 | FALSE |
50 | GTEx | Esophagus Mucosa | RP11-263K19.4 | 0.14 | 0.14 | lasso | 4 | 0.12 | 1.5e-08 | -6.9 | 7.0 | 2.1e-12 | 0.76 | 0.33 | 0.67 | FALSE |
51 | GTEx | Esophagus Muscularis | RIT1 | 0.06 | 0.02 | lasso | 3 | 0.01 | 6.0e-02 | 5.3 | -6.2 | 7.7e-10 | -0.42 | 0.05 | 0.79 | FALSE |
52 | GTEx | Esophagus Muscularis | GBAP1 | 0.09 | 0.13 | enet | 4 | 0.12 | 8.9e-08 | -7.3 | -7.2 | 8.5e-13 | -0.73 | 0.91 | 0.09 | FALSE |
53 | GTEx | Heart Left Ventricle | RIT1 | 0.06 | 0.08 | lasso | 2 | 0.08 | 3.5e-05 | 6.0 | -6.0 | 1.5e-09 | -0.30 | 0.15 | 0.66 | FALSE |
54 | GTEx | Heart Left Ventricle | GBAP1 | 0.18 | 0.22 | enet | 13 | 0.18 | 1.1e-09 | -7.3 | -7.2 | 7.7e-13 | -0.70 | 0.99 | 0.01 | FALSE |
55 | GTEx | Lung | HCN3 | 0.08 | 0.01 | lasso | 5 | 0.00 | 3.4e-01 | 5.2 | -5.2 | 1.7e-07 | -0.38 | 0.14 | 0.04 | FALSE |
56 | GTEx | Lung | GBAP1 | 0.16 | 0.16 | lasso | 5 | 0.15 | 1.6e-11 | -7.3 | -7.3 | 3.7e-13 | -0.71 | 0.95 | 0.05 | FALSE |
57 | GTEx | Lung | THBS3 | 0.11 | 0.07 | lasso | 4 | 0.04 | 1.0e-03 | -6.9 | 7.0 | 2.2e-12 | 0.74 | 0.24 | 0.72 | FALSE |
58 | GTEx | Muscle Skeletal | RIT1 | 0.06 | 0.03 | enet | 8 | 0.03 | 3.6e-04 | 8.0 | -7.8 | 6.1e-15 | -0.41 | 0.01 | 0.99 | FALSE |
59 | GTEx | Nerve Tibial | RIT1 | 0.12 | 0.10 | lasso | 5 | 0.09 | 8.8e-07 | 6.7 | -7.5 | 4.9e-14 | -0.38 | 0.26 | 0.73 | FALSE |
60 | GTEx | Nerve Tibial | HCN3 | 0.17 | 0.28 | lasso | 6 | 0.25 | 5.8e-18 | 5.4 | -5.6 | 2.0e-08 | -0.47 | 1.00 | 0.00 | FALSE |
61 | GTEx | Nerve Tibial | RUSC1 | 0.08 | 0.10 | lasso | 5 | 0.09 | 8.9e-07 | 6.3 | -5.2 | 1.7e-07 | -0.53 | 0.91 | 0.01 | FALSE |
62 | GTEx | Nerve Tibial | GBAP1 | 0.12 | 0.14 | lasso | 1 | 0.14 | 8.9e-10 | -6.9 | -6.9 | 4.8e-12 | -0.74 | 0.91 | 0.09 | FALSE |
63 | GTEx | Nerve Tibial | GBA | 0.14 | 0.02 | lasso | 5 | 0.01 | 3.3e-02 | -6.9 | -7.3 | 2.3e-13 | -0.75 | 0.22 | 0.52 | FALSE |
64 | GTEx | Pancreas | GBAP1 | 0.12 | 0.17 | enet | 10 | 0.14 | 2.4e-06 | -7.3 | -7.3 | 3.4e-13 | -0.71 | 0.17 | 0.79 | FALSE |
65 | GTEx | Pancreas | GBA | 0.12 | 0.05 | enet | 10 | 0.02 | 4.2e-02 | -6.9 | -7.5 | 7.9e-14 | -0.82 | 0.16 | 0.51 | FALSE |
66 | GTEx | Pituitary | RIT1 | 0.14 | 0.00 | lasso | 2 | 0.02 | 1.0e-01 | 6.6 | -6.7 | 3.0e-11 | -0.36 | 0.07 | 0.25 | FALSE |
67 | GTEx | Prostate | GBAP1 | 0.47 | 0.30 | lasso | 7 | 0.32 | 1.1e-08 | -6.9 | -7.0 | 1.8e-12 | -0.79 | 0.04 | 0.95 | FALSE |
68 | GTEx | Skin Sun Exposed Lower leg | RIT1 | 0.09 | 0.09 | lasso | 5 | 0.06 | 5.9e-06 | 6.7 | -6.8 | 1.5e-11 | -0.36 | 0.47 | 0.52 | FALSE |
69 | GTEx | Skin Sun Exposed Lower leg | RP11-263K19.4 | 0.04 | 0.01 | enet | 9 | 0.01 | 3.3e-02 | -6.9 | 7.5 | 7.5e-14 | 0.78 | 0.08 | 0.78 | FALSE |
70 | GTEx | Small Intestine Terminal Ileum | GBAP1 | 0.20 | 0.13 | lasso | 10 | 0.11 | 1.8e-03 | 7.8 | -7.6 | 2.4e-14 | -0.87 | 0.05 | 0.72 | FALSE |
71 | GTEx | Spleen | GBAP1 | 0.33 | 0.23 | enet | 20 | 0.28 | 7.9e-08 | -7.1 | -6.0 | 2.4e-09 | -0.68 | 0.29 | 0.66 | FALSE |
72 | GTEx | Spleen | THBS3 | 0.23 | 0.10 | enet | 17 | 0.08 | 4.6e-03 | 5.2 | 7.7 | 1.8e-14 | 0.89 | 0.03 | 0.88 | FALSE |
73 | GTEx | Stomach | GBAP1 | 0.09 | 0.12 | lasso | 3 | 0.13 | 1.2e-06 | -7.3 | -7.3 | 3.1e-13 | -0.66 | 0.64 | 0.28 | FALSE |
74 | GTEx | Stomach | MTX1P1 | 0.22 | -0.01 | lasso | 4 | 0.01 | 1.7e-01 | 5.5 | -6.2 | 6.9e-10 | -0.51 | 0.03 | 0.11 | FALSE |
75 | GTEx | Testis | THBS3 | 0.11 | 0.11 | lasso | 2 | 0.09 | 1.2e-04 | -7.3 | 7.3 | 3.7e-13 | 0.71 | 0.21 | 0.65 | FALSE |
76 | GTEx | Testis | RP11-263K19.4 | 0.08 | 0.12 | lasso | 2 | 0.10 | 2.4e-05 | -7.3 | 7.3 | 3.5e-13 | 0.70 | 0.19 | 0.57 | FALSE |
77 | GTEx | Thyroid | GON4L | 0.08 | 0.02 | enet | 28 | 0.00 | 4.0e-01 | 5.5 | -6.8 | 1.0e-11 | -0.43 | 0.13 | 0.20 | FALSE |
78 | GTEx | Thyroid | DAP3 | 0.11 | 0.04 | lasso | 9 | 0.04 | 8.9e-04 | 5.4 | -6.1 | 1.3e-09 | -0.47 | 0.40 | 0.03 | FALSE |
79 | GTEx | Thyroid | RIT1 | 0.16 | 0.18 | lasso | 4 | 0.17 | 6.6e-13 | 6.9 | -6.9 | 4.8e-12 | -0.37 | 0.95 | 0.05 | FALSE |
80 | GTEx | Thyroid | HCN3 | 0.05 | 0.05 | lasso | 1 | 0.04 | 5.2e-04 | 5.5 | -5.5 | 4.6e-08 | -0.44 | 0.30 | 0.03 | FALSE |
81 | GTEx | Thyroid | GBAP1 | 0.23 | 0.28 | lasso | 10 | 0.27 | 4.6e-21 | -6.8 | -7.2 | 6.9e-13 | -0.78 | 0.99 | 0.01 | FALSE |
82 | GTEx | Thyroid | THBS3 | 0.12 | 0.09 | enet | 8 | 0.09 | 3.6e-07 | -7.1 | 8.8 | 9.0e-19 | 0.84 | 0.01 | 0.99 | FALSE |
83 | GTEx | Thyroid | MUC1 | 0.11 | 0.02 | enet | 15 | 0.09 | 1.5e-07 | -2.3 | -6.3 | 2.7e-10 | -0.71 | 0.04 | 0.95 | FALSE |
84 | GTEx | Thyroid | MSTO2P | 0.05 | 0.05 | lasso | 5 | 0.04 | 6.2e-04 | 7.2 | -6.4 | 1.9e-10 | -0.44 | 0.68 | 0.05 | FALSE |
85 | GTEx | Vagina | GBAP1 | 0.27 | 0.08 | lasso | 7 | 0.17 | 1.3e-04 | 5.2 | -7.3 | 2.8e-13 | -0.85 | 0.06 | 0.76 | FALSE |
86 | GTEx | Whole Blood | FAM189B | 0.05 | 0.00 | enet | 14 | 0.01 | 3.5e-02 | 5.4 | -5.2 | 2.4e-07 | -0.49 | 0.16 | 0.31 | FALSE |
87 | GTEx | Whole Blood | THBS3 | 0.17 | 0.20 | enet | 5 | 0.21 | 1.0e-18 | -6.9 | 7.1 | 1.4e-12 | 0.74 | 1.00 | 0.00 | FALSE |
88 | GTEx | Whole Blood | GBA | 0.07 | 0.11 | lasso | 4 | 0.09 | 1.2e-08 | 6.3 | 6.1 | 8.3e-10 | 0.54 | 1.00 | 0.00 | FALSE |
89 | GTEx | Whole Blood | RP11-263K19.4 | 0.15 | 0.17 | lasso | 4 | 0.17 | 9.5e-16 | -6.9 | 7.1 | 1.1e-12 | 0.73 | 1.00 | 0.00 | FALSE |
90 | METSIM | Adipose | DAP3 | 0.03 | 0.03 | enet | 16 | 0.04 | 8.3e-07 | 4.9 | -5.7 | 9.7e-09 | -0.37 | 0.75 | 0.21 | FALSE |
91 | METSIM | Adipose | EFNA1 | 0.04 | 0.02 | blup | 350 | 0.02 | 8.5e-04 | 5.2 | -8.8 | 1.5e-18 | -0.83 | 0.04 | 0.94 | FALSE |
92 | METSIM | Adipose | RIT1 | 0.04 | 0.06 | lasso | 4 | 0.05 | 1.9e-08 | 8.0 | -7.9 | 2.1e-15 | -0.41 | 0.01 | 0.99 | FALSE |
93 | METSIM | Adipose | THBS3 | 0.09 | 0.10 | lasso | 7 | 0.12 | 4.7e-17 | -6.9 | 7.7 | 1.2e-14 | 0.71 | 1.00 | 0.00 | FALSE |
94 | NTR | Blood | THBS3 | 0.03 | 0.02 | blup | 341 | 0.02 | 2.8e-08 | -6.8 | 7.6 | 3.8e-14 | 0.77 | 0.08 | 0.92 | FALSE |
95 | YFS | Blood | FAM189B | 0.02 | 0.01 | bslmm | 312 | 0.02 | 3.2e-06 | 7.8 | 8.3 | 7.1e-17 | 0.78 | 0.51 | 0.48 | FALSE |
96 | YFS | Blood | SYT11 | 0.01 | 0.01 | lasso | 4 | 0.01 | 2.8e-05 | 7.0 | -6.9 | 6.5e-12 | -0.42 | 0.75 | 0.23 | FALSE |
97 | YFS | Blood | THBS3 | 0.29 | 0.22 | enet | 38 | 0.31 | 6.4e-105 | -6.9 | 7.5 | 7.1e-14 | 0.76 | 1.00 | 0.00 | FALSE |
98 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TRIM46 | 0.03 | 0.00 | blup | 33 | 0.02 | 3.6e-03 | 3.2 | 6.7 | 2.7e-11 | 0.84 | 0.01 | 0.65 | FALSE |
99 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GBA | 0.03 | 0.00 | blup | 26 | 0.02 | 3.1e-04 | 5.4 | -5.5 | 4.0e-08 | -0.58 | 0.01 | 0.87 | FALSE |
100 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GBAP1 | 0.02 | 0.03 | lasso | 4 | 0.03 | 1.3e-07 | -6.9 | -6.3 | 2.2e-10 | -0.68 | 0.34 | 0.64 | FALSE |
101 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MSTO2P | 0.02 | 0.02 | lasso | 2 | 0.01 | 1.0e-03 | 7.2 | -7.2 | 6.9e-13 | -0.45 | 0.00 | 0.98 | FALSE |
102 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RIT1 | 0.02 | 0.01 | blup | 39 | 0.02 | 3.1e-04 | 6.7 | -7.1 | 1.1e-12 | -0.38 | 0.05 | 0.93 | FALSE |
103 | The Cancer Genome Atlas | Breast Invasive Carcinoma | THBS3 | 0.02 | 0.02 | blup | 26 | 0.02 | 4.0e-05 | -6.8 | 6.5 | 8.6e-11 | 0.74 | 0.03 | 0.92 | FALSE |
104 | The Cancer Genome Atlas | Breast Invasive Carcinoma | YY1AP1 | 0.03 | 0.01 | enet | 3 | 0.01 | 1.6e-03 | 4.1 | -5.8 | 6.6e-09 | -0.42 | 0.02 | 0.73 | FALSE |
105 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | GBAP1 | 0.10 | 0.06 | enet | 9 | 0.04 | 5.1e-03 | -6.9 | -9.2 | 4.7e-20 | -0.89 | 0.01 | 0.76 | TRUE |
106 | The Cancer Genome Atlas | Colon Adenocarcinoma | HCN3 | 0.08 | 0.00 | lasso | 3 | 0.00 | 5.7e-01 | 4.2 | -6.0 | 2.5e-09 | -0.31 | 0.01 | 0.39 | FALSE |
107 | The Cancer Genome Atlas | Esophageal Carcinoma | FAM189B | 0.36 | 0.05 | lasso | 3 | 0.02 | 6.1e-02 | -6.9 | -7.1 | 1.1e-12 | -0.75 | 0.00 | 0.67 | FALSE |
108 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | THBS3 | 0.04 | 0.01 | blup | 25 | 0.03 | 3.1e-04 | 8.7 | 7.8 | 5.6e-15 | 0.78 | 0.00 | 0.94 | FALSE |
109 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GBA | 0.04 | 0.01 | blup | 26 | 0.01 | 8.3e-03 | 4.8 | -7.4 | 1.8e-13 | -0.62 | 0.03 | 0.36 | FALSE |
110 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GBAP1 | 0.04 | 0.04 | blup | 26 | 0.04 | 2.5e-05 | 7.8 | -8.9 | 4.9e-19 | -0.92 | 0.00 | 0.99 | FALSE |
111 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | HCN3 | 0.03 | 0.03 | lasso | 1 | 0.03 | 2.3e-04 | 5.3 | -5.3 | 1.3e-07 | -0.42 | 0.02 | 0.91 | FALSE |
112 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | THBS3 | 0.02 | 0.03 | lasso | 4 | 0.03 | 2.1e-04 | -6.9 | 7.0 | 3.5e-12 | 0.77 | 0.03 | 0.91 | FALSE |
113 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RIT1 | 0.05 | 0.07 | enet | 6 | 0.06 | 1.6e-04 | 6.8 | -7.0 | 2.5e-12 | -0.42 | 0.03 | 0.86 | FALSE |
114 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | THBS3 | 0.04 | 0.02 | enet | 8 | 0.01 | 4.5e-02 | 7.8 | 8.2 | 3.6e-16 | 0.83 | 0.01 | 0.73 | FALSE |
115 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GBAP1 | 0.03 | 0.01 | blup | 26 | 0.02 | 1.9e-03 | 7.8 | -6.8 | 1.0e-11 | -0.85 | 0.01 | 0.97 | FALSE |
116 | The Cancer Genome Atlas | Brain Lower Grade Glioma | KIAA0907 | 0.02 | 0.02 | blup | 42 | 0.01 | 1.1e-02 | 7.9 | 7.9 | 2.0e-15 | 0.41 | 0.01 | 0.85 | FALSE |
117 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RAG1AP1 | 0.07 | 0.05 | blup | 77 | 0.05 | 3.8e-06 | 6.5 | 8.0 | 1.3e-15 | 0.91 | 0.04 | 0.96 | FALSE |
118 | The Cancer Genome Atlas | Lung Adenocarcinoma | GBAP1 | 0.02 | 0.03 | enet | 2 | 0.02 | 2.3e-03 | -6.9 | -6.9 | 4.3e-12 | -0.74 | 0.04 | 0.40 | FALSE |
119 | The Cancer Genome Atlas | Lung Adenocarcinoma | MSTO2P | 0.05 | 0.03 | lasso | 3 | 0.03 | 4.9e-04 | 7.2 | -7.1 | 1.5e-12 | -0.45 | 0.00 | 0.99 | TRUE |
120 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | GBA | 0.02 | 0.00 | blup | 27 | 0.01 | 1.2e-02 | 5.4 | -7.5 | 6.0e-14 | -0.63 | 0.01 | 0.50 | FALSE |
121 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | GBAP1 | 0.04 | 0.02 | blup | 27 | 0.03 | 4.7e-04 | -6.9 | -7.6 | 3.7e-14 | -0.72 | 0.02 | 0.59 | FALSE |
122 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | RIT1 | 0.05 | 0.05 | enet | 8 | 0.05 | 2.5e-04 | 6.8 | -7.6 | 3.4e-14 | -0.43 | 0.01 | 0.95 | TRUE |
123 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | TRIM46 | 0.08 | 0.08 | lasso | 2 | 0.07 | 2.1e-05 | -6.9 | 6.9 | 4.8e-12 | 0.74 | 0.05 | 0.84 | FALSE |
124 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ZBTB7B | 0.29 | 0.13 | lasso | 2 | 0.11 | 5.5e-05 | 6.9 | -6.9 | 3.9e-12 | -0.28 | 0.00 | 1.00 | FALSE |
125 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FDPS | 0.02 | 0.02 | lasso | 2 | 0.01 | 1.6e-02 | 5.4 | -5.4 | 5.5e-08 | -0.44 | 0.01 | 0.69 | FALSE |
126 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GBA | 0.05 | 0.01 | lasso | 2 | 0.01 | 2.3e-02 | 6.1 | -7.2 | 5.0e-13 | -0.46 | 0.02 | 0.19 | FALSE |
127 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GBAP1 | 0.06 | 0.06 | lasso | 9 | 0.06 | 3.5e-07 | 7.8 | -8.6 | 7.0e-18 | -0.90 | 0.00 | 1.00 | FALSE |
128 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MSTO1 | 0.03 | 0.03 | blup | 6 | 0.03 | 2.1e-04 | 5.3 | -5.2 | 1.9e-07 | -0.38 | 0.00 | 0.98 | FALSE |
129 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RIT1 | 0.05 | 0.05 | lasso | 4 | 0.04 | 2.2e-05 | 6.8 | -6.7 | 2.7e-11 | -0.37 | 0.17 | 0.79 | FALSE |
130 | The Cancer Genome Atlas | Prostate Adenocarcinoma | THBS3 | 0.10 | 0.12 | enet | 11 | 0.10 | 4.4e-11 | -6.8 | 6.1 | 9.4e-10 | 0.68 | 0.99 | 0.01 | FALSE |
131 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RIT1 | 0.07 | 0.04 | enet | 6 | 0.04 | 8.5e-04 | 7.4 | -6.5 | 1.0e-10 | -0.23 | 0.15 | 0.36 | FALSE |
132 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RIT1 | 0.23 | 0.14 | lasso | 3 | 0.12 | 5.7e-05 | 7.4 | -7.5 | 4.3e-14 | -0.29 | 0.03 | 0.65 | FALSE |
133 | The Cancer Genome Atlas | Thyroid Carcinoma | EFNA3 | 0.07 | 0.00 | enet | 16 | 0.05 | 2.6e-05 | -7.6 | -7.0 | 3.5e-12 | -0.62 | 0.03 | 0.94 | FALSE |
134 | The Cancer Genome Atlas | Thyroid Carcinoma | GBAP1 | 0.02 | 0.01 | blup | 24 | 0.02 | 3.0e-03 | -6.9 | -6.4 | 1.3e-10 | -0.73 | 0.02 | 0.45 | FALSE |
135 | The Cancer Genome Atlas | Thyroid Carcinoma | RIT1 | 0.09 | 0.07 | enet | 5 | 0.06 | 1.4e-06 | 7.4 | -6.2 | 6.4e-10 | -0.19 | 0.34 | 0.62 | TRUE |
136 | The Cancer Genome Atlas | Thyroid Carcinoma | THBS3 | 0.14 | 0.03 | enet | 16 | 0.08 | 3.8e-08 | -6.8 | 6.2 | 6.3e-10 | 0.60 | 0.03 | 0.95 | FALSE |