Best TWAS P=8.25e-113 · Best GWAS P=5.06e-95 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CHRNB1 | 0.09 | 0.06 | lasso | 2 | 0.08 | 9.8e-10 | 20.485 | 19.8 | 5.5e-87 | 0.91 | 0.01 | 0.99 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | EIF5A | 0.20 | 0.12 | bslmm | 446 | 0.10 | 1.2e-12 | -4.713 | -8.6 | 6.2e-18 | -0.25 | 1.00 | 0.00 | TRUE |
3 | CommonMind | Brain Pre-frontal Cortex | PFAS | 0.10 | 0.09 | lasso | 4 | 0.10 | 8.9e-13 | -7.808 | -9.2 | 3.6e-20 | 0.01 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | POLR2A | 0.08 | 0.07 | lasso | 4 | 0.07 | 1.9e-08 | 19.758 | 20.4 | 2.7e-92 | 0.64 | 1.00 | 0.00 | FALSE |
5 | GTEx | Adipose Subcutaneous | KCNAB3 | 0.09 | 0.08 | lasso | 3 | 0.05 | 5.8e-05 | -4.309 | 5.5 | 4.2e-08 | 0.04 | 0.99 | 0.00 | FALSE |
6 | GTEx | Adipose Subcutaneous | CHRNB1 | 0.30 | 0.22 | lasso | 8 | 0.26 | 1.6e-21 | -11.522 | 17.4 | 1.5e-67 | 0.66 | 1.00 | 0.00 | FALSE |
7 | GTEx | Adipose Subcutaneous | CTC1 | 0.26 | 0.07 | enet | 22 | 0.08 | 6.9e-07 | 7.845 | -6.9 | 5.9e-12 | -0.02 | 0.99 | 0.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | KIAA0753 | 0.15 | 0.12 | lasso | 2 | 0.09 | 3.8e-08 | 5.406 | -5.5 | 3.7e-08 | -0.01 | 0.01 | 0.99 | FALSE |
9 | GTEx | Adipose Subcutaneous | RP11-849F2.8 | 0.16 | 0.08 | lasso | 9 | 0.07 | 3.5e-06 | 7.845 | -7.0 | 2.7e-12 | 0.00 | 0.95 | 0.00 | FALSE |
10 | GTEx | Adipose Visceral Omentum | CHRNB1 | 0.29 | 0.14 | lasso | 5 | 0.14 | 1.0e-07 | 20.485 | 22.6 | 8.3e-113 | 0.93 | 0.02 | 0.97 | TRUE |
11 | GTEx | Artery Aorta | MED31 | 0.16 | 0.01 | lasso | 3 | 0.04 | 4.0e-03 | 5.406 | -5.4 | 5.9e-08 | 0.03 | 0.01 | 0.96 | FALSE |
12 | GTEx | Artery Aorta | CHRNB1 | 0.23 | 0.10 | enet | 7 | 0.13 | 1.3e-07 | -11.317 | 18.2 | 3.4e-74 | 0.72 | 0.14 | 0.84 | FALSE |
13 | GTEx | Artery Aorta | KIAA0753 | 0.23 | 0.21 | lasso | 5 | 0.20 | 2.6e-11 | 5.402 | -5.5 | 5.0e-08 | -0.01 | 0.01 | 0.99 | FALSE |
14 | GTEx | Artery Coronary | CHRNB1 | 0.26 | 0.08 | enet | 24 | 0.11 | 1.3e-04 | 19.758 | 15.0 | 4.9e-51 | 0.68 | 0.02 | 0.92 | FALSE |
15 | GTEx | Artery Tibial | KDM6B | 0.14 | 0.02 | enet | 22 | 0.03 | 1.4e-03 | -4.488 | 11.0 | 2.4e-28 | 0.31 | 0.20 | 0.29 | TRUE |
16 | GTEx | Artery Tibial | CHRNB1 | 0.27 | 0.20 | lasso | 5 | 0.22 | 8.1e-17 | -11.429 | 17.1 | 6.4e-66 | 0.72 | 0.97 | 0.03 | FALSE |
17 | GTEx | Artery Tibial | ZBTB4 | 0.15 | 0.05 | enet | 30 | 0.07 | 2.9e-06 | 19.959 | 13.8 | 1.9e-43 | 0.21 | 0.78 | 0.03 | TRUE |
18 | GTEx | Artery Tibial | KIAA0753 | 0.15 | 0.16 | lasso | 3 | 0.16 | 1.5e-12 | 5.402 | -5.1 | 2.8e-07 | -0.01 | 0.01 | 0.99 | FALSE |
19 | GTEx | Artery Tibial | TNFSF12 | 0.11 | 0.06 | lasso | 2 | 0.05 | 1.2e-04 | 15.663 | 15.7 | 2.7e-55 | 0.34 | 0.75 | 0.03 | FALSE |
20 | GTEx | Artery Tibial | RP11-849F2.8 | 0.09 | 0.04 | lasso | 5 | 0.05 | 1.2e-04 | 7.934 | -7.4 | 1.3e-13 | 0.00 | 0.94 | 0.00 | FALSE |
21 | GTEx | Brain Frontal Cortex BA9 | PFAS | 0.28 | 0.04 | lasso | 5 | 0.09 | 2.2e-03 | -7.808 | -9.8 | 1.9e-22 | 0.04 | 0.11 | 0.05 | TRUE |
22 | GTEx | Breast Mammary Tissue | CHRNB1 | 0.23 | 0.07 | enet | 19 | 0.14 | 1.6e-07 | -11.429 | 15.4 | 1.2e-53 | 0.75 | 0.00 | 0.99 | FALSE |
23 | GTEx | Breast Mammary Tissue | KIAA0753 | 0.18 | 0.10 | lasso | 2 | 0.06 | 6.6e-04 | 5.391 | -5.3 | 9.9e-08 | -0.01 | 0.01 | 0.98 | FALSE |
24 | GTEx | Breast Mammary Tissue (Male) | CHRNB1 | 0.28 | -0.01 | lasso | 6 | 0.02 | 9.6e-02 | 20.485 | 16.9 | 5.7e-64 | 0.84 | 0.01 | 0.84 | TRUE |
25 | GTEx | Cells Transformed fibroblasts | CHRNB1 | 0.28 | 0.11 | enet | 25 | 0.18 | 2.9e-13 | 20.485 | 20.1 | 3.1e-90 | 0.73 | 0.07 | 0.93 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | PFAS | 0.13 | 0.05 | lasso | 6 | 0.07 | 4.1e-06 | -8.975 | -8.9 | 6.4e-19 | -0.01 | 0.94 | 0.02 | FALSE |
27 | GTEx | Colon Sigmoid | CHRNB1 | 0.18 | 0.06 | enet | 18 | 0.11 | 1.3e-04 | -11.429 | 17.0 | 8.4e-65 | 0.65 | 0.17 | 0.62 | FALSE |
28 | GTEx | Colon Transverse | CHRNB1 | 0.19 | 0.01 | enet | 18 | 0.11 | 6.2e-06 | 19.885 | 11.0 | 2.6e-28 | 0.44 | 0.07 | 0.53 | FALSE |
29 | GTEx | Colon Transverse | KIAA0753 | 0.18 | 0.14 | lasso | 2 | 0.12 | 1.7e-06 | 5.406 | -5.4 | 6.4e-08 | -0.01 | 0.01 | 0.99 | FALSE |
30 | GTEx | Esophagus Gastroesophageal Junction | KIAA0753 | 0.58 | 0.56 | lasso | 1 | 0.55 | 2.2e-23 | 5.406 | -5.4 | 6.5e-08 | -0.01 | 0.01 | 0.99 | FALSE |
31 | GTEx | Esophagus Mucosa | SOX15 | 0.16 | 0.03 | enet | 9 | 0.07 | 2.3e-05 | 12.342 | -8.0 | 1.7e-15 | -0.11 | 0.26 | 0.04 | TRUE |
32 | GTEx | Esophagus Mucosa | CD68 | 0.30 | 0.19 | lasso | 5 | 0.17 | 2.5e-11 | -4.465 | -5.7 | 9.5e-09 | -0.13 | 1.00 | 0.00 | FALSE |
33 | GTEx | Esophagus Mucosa | CHRNB1 | 0.19 | 0.11 | lasso | 2 | 0.13 | 7.3e-09 | 20.485 | 22.2 | 8.2e-109 | 0.93 | 0.02 | 0.98 | FALSE |
34 | GTEx | Esophagus Mucosa | ZBTB4 | 0.12 | 0.10 | lasso | 2 | 0.08 | 8.0e-06 | 19.880 | 19.9 | 1.1e-87 | 0.65 | 0.90 | 0.06 | FALSE |
35 | GTEx | Esophagus Mucosa | AC135178.1 | 0.16 | 0.01 | enet | 30 | 0.06 | 8.8e-05 | -3.393 | 5.8 | 7.9e-09 | 0.00 | 0.37 | 0.15 | FALSE |
36 | GTEx | Esophagus Mucosa | KIAA0753 | 0.32 | 0.34 | lasso | 4 | 0.34 | 1.4e-23 | 5.406 | -5.5 | 3.0e-08 | -0.01 | 0.01 | 0.99 | FALSE |
37 | GTEx | Esophagus Muscularis | NDEL1 | 0.11 | 0.02 | enet | 5 | 0.02 | 1.4e-02 | 7.731 | 6.1 | 8.9e-10 | -0.04 | 0.16 | 0.12 | FALSE |
38 | GTEx | Esophagus Muscularis | CHRNB1 | 0.35 | 0.19 | lasso | 7 | 0.28 | 1.9e-17 | -11.317 | 17.5 | 3.0e-68 | 0.63 | 0.98 | 0.02 | FALSE |
39 | GTEx | Esophagus Muscularis | ZBTB4 | 0.13 | 0.06 | lasso | 2 | 0.05 | 6.3e-04 | 19.737 | 20.1 | 1.1e-89 | 0.64 | 0.24 | 0.37 | FALSE |
40 | GTEx | Esophagus Muscularis | KIAA0753 | 0.46 | 0.46 | lasso | 4 | 0.48 | 1.2e-32 | 5.406 | -5.9 | 3.7e-09 | 0.00 | 0.01 | 0.99 | FALSE |
41 | GTEx | Heart Left Ventricle | CHRNB1 | 0.16 | 0.03 | lasso | 4 | 0.05 | 9.6e-04 | -6.657 | 12.3 | 7.0e-35 | 0.39 | 0.09 | 0.34 | FALSE |
42 | GTEx | Lung | CNTROB | 0.15 | 0.06 | enet | 28 | 0.07 | 9.5e-06 | -3.374 | 10.1 | 6.6e-24 | 0.19 | 0.64 | 0.02 | FALSE |
43 | GTEx | Lung | CHRNB1 | 0.22 | 0.05 | enet | 17 | 0.14 | 7.5e-11 | -6.670 | 17.4 | 4.5e-68 | 0.59 | 0.38 | 0.61 | FALSE |
44 | GTEx | Lung | CTC1 | 0.16 | 0.09 | lasso | 7 | 0.12 | 9.9e-10 | 8.987 | -10.0 | 1.2e-23 | 0.00 | 1.00 | 0.00 | TRUE |
45 | GTEx | Lung | RP11-849F2.8 | 0.12 | 0.08 | lasso | 5 | 0.09 | 1.2e-07 | 7.893 | -8.7 | 5.2e-18 | 0.01 | 0.99 | 0.00 | FALSE |
46 | GTEx | Muscle Skeletal | EIF5A | 0.14 | 0.06 | enet | 35 | 0.05 | 4.2e-06 | -4.322 | -7.7 | 1.3e-14 | -0.06 | 0.97 | 0.00 | FALSE |
47 | GTEx | Nerve Tibial | CNTROB | 0.17 | 0.09 | enet | 14 | 0.13 | 9.7e-10 | -4.574 | 5.2 | 2.5e-07 | 0.02 | 1.00 | 0.00 | TRUE |
48 | GTEx | Nerve Tibial | CHRNB1 | 0.37 | 0.31 | enet | 12 | 0.35 | 9.7e-26 | -11.317 | 14.6 | 3.8e-48 | 0.56 | 1.00 | 0.00 | FALSE |
49 | GTEx | Nerve Tibial | KIAA0753 | 0.19 | 0.20 | lasso | 5 | 0.18 | 6.6e-13 | 5.406 | -5.5 | 4.0e-08 | -0.01 | 0.01 | 0.99 | FALSE |
50 | GTEx | Nerve Tibial | RP11-849F2.8 | 0.22 | 0.09 | enet | 30 | 0.13 | 3.3e-09 | 7.893 | -9.4 | 3.8e-21 | 0.00 | 0.98 | 0.00 | FALSE |
51 | GTEx | Pancreas | CNTROB | 0.14 | 0.06 | lasso | 8 | 0.03 | 1.5e-02 | -3.888 | 9.2 | 3.0e-20 | 0.19 | 0.34 | 0.15 | FALSE |
52 | GTEx | Pancreas | TRAPPC1 | 0.17 | 0.00 | lasso | 6 | 0.01 | 1.5e-01 | 19.737 | 18.3 | 8.3e-75 | 0.42 | 0.04 | 0.62 | FALSE |
53 | GTEx | Pancreas | KCNAB3 | 0.16 | 0.07 | enet | 14 | 0.12 | 1.0e-05 | -4.529 | 6.9 | 6.9e-12 | 0.02 | 0.86 | 0.01 | FALSE |
54 | GTEx | Prostate | RP11-104H15.8 | 0.54 | 0.01 | enet | 1 | 0.06 | 1.6e-02 | -10.108 | -10.1 | 5.1e-24 | 0.03 | 0.07 | 0.07 | TRUE |
55 | GTEx | Skin Not Sun Exposed Suprapubic | CHRNB1 | 0.17 | 0.15 | lasso | 3 | 0.16 | 7.4e-09 | 20.485 | 21.9 | 4.9e-106 | 0.93 | 0.05 | 0.95 | FALSE |
56 | GTEx | Skin Not Sun Exposed Suprapubic | KIAA0753 | 0.18 | 0.17 | lasso | 3 | 0.16 | 6.0e-09 | 5.406 | -5.4 | 7.0e-08 | 0.00 | 0.01 | 0.99 | FALSE |
57 | GTEx | Skin Sun Exposed Lower leg | MED31 | 0.17 | 0.08 | enet | 13 | 0.12 | 2.1e-10 | 5.402 | -5.9 | 3.1e-09 | -0.01 | 0.01 | 0.99 | FALSE |
58 | GTEx | Skin Sun Exposed Lower leg | CHRNB1 | 0.19 | 0.12 | enet | 13 | 0.12 | 3.0e-10 | 19.959 | 20.3 | 1.5e-91 | 0.74 | 0.64 | 0.36 | FALSE |
59 | GTEx | Skin Sun Exposed Lower leg | RP11-849F2.9 | 0.13 | 0.00 | enet | 34 | 0.02 | 1.1e-02 | -8.990 | -8.6 | 6.7e-18 | 0.02 | 0.16 | 0.06 | TRUE |
60 | GTEx | Small Intestine Terminal Ileum | CHRNB1 | 0.43 | -0.01 | lasso | 9 | 0.00 | 2.9e-01 | 0.047 | 9.6 | 5.8e-22 | 0.26 | 0.05 | 0.22 | FALSE |
61 | GTEx | Spleen | CNTROB | 0.22 | 0.04 | enet | 19 | 0.03 | 7.4e-02 | -3.391 | 8.3 | 1.3e-16 | -0.04 | 0.18 | 0.06 | TRUE |
62 | GTEx | Stomach | CHRNB1 | 0.28 | 0.19 | lasso | 4 | 0.23 | 2.0e-11 | 20.485 | 20.0 | 3.5e-89 | 0.86 | 0.01 | 0.99 | FALSE |
63 | GTEx | Testis | PITPNM3 | 0.41 | 0.31 | lasso | 4 | 0.34 | 5.2e-16 | 5.534 | 6.2 | 6.6e-10 | 0.01 | 0.01 | 0.99 | TRUE |
64 | GTEx | Testis | CHRNB1 | 0.33 | 0.28 | lasso | 4 | 0.30 | 4.8e-14 | 5.036 | 8.3 | 1.1e-16 | 0.69 | 1.00 | 0.00 | FALSE |
65 | GTEx | Thyroid | CHRNB1 | 0.11 | 0.03 | lasso | 8 | 0.02 | 7.1e-03 | -11.522 | 13.5 | 9.3e-42 | 0.55 | 0.17 | 0.28 | FALSE |
66 | GTEx | Thyroid | AC135178.7 | 0.13 | 0.03 | lasso | 4 | 0.06 | 1.5e-05 | 1.980 | 5.7 | 1.0e-08 | -0.05 | 0.27 | 0.29 | FALSE |
67 | GTEx | Whole Blood | CTC1 | 0.13 | 0.09 | lasso | 8 | 0.09 | 8.6e-09 | 7.845 | -7.4 | 1.2e-13 | 0.02 | 0.99 | 0.00 | FALSE |
68 | GTEx | Whole Blood | KIAA0753 | 0.13 | 0.05 | enet | 4 | 0.05 | 2.6e-05 | 5.406 | -5.2 | 1.6e-07 | -0.04 | 0.01 | 0.97 | FALSE |
69 | GTEx | Whole Blood | TNFSF12 | 0.09 | 0.03 | enet | 24 | 0.04 | 1.9e-04 | -3.861 | -5.6 | 2.3e-08 | -0.38 | 0.63 | 0.17 | FALSE |
70 | GTEx | Whole Blood | RP11-849F2.8 | 0.10 | 0.06 | lasso | 8 | 0.05 | 1.6e-05 | 8.752 | -8.6 | 8.6e-18 | 0.00 | 0.99 | 0.00 | FALSE |
71 | METSIM | Adipose | ACAP1 | 0.06 | 0.03 | blup | 452 | 0.03 | 2.5e-05 | -6.052 | -5.7 | 1.1e-08 | -0.03 | 0.58 | 0.02 | FALSE |
72 | METSIM | Adipose | CHD3 | 0.06 | 0.03 | blup | 509 | 0.02 | 6.7e-04 | 0.681 | 8.5 | 1.9e-17 | -0.04 | 0.28 | 0.03 | FALSE |
73 | METSIM | Adipose | CHRNB1 | 0.22 | 0.16 | bslmm | 486 | 0.20 | 1.2e-28 | -11.429 | 12.9 | 2.7e-38 | 0.60 | 1.00 | 0.00 | FALSE |
74 | METSIM | Adipose | CNTROB | 0.06 | 0.02 | blup | 497 | 0.03 | 1.3e-05 | -3.289 | -6.2 | 6.8e-10 | -0.23 | 0.88 | 0.01 | FALSE |
75 | METSIM | Adipose | CTC1 | 0.13 | 0.07 | enet | 25 | 0.08 | 5.8e-12 | 7.845 | -9.6 | 6.7e-22 | 0.00 | 1.00 | 0.00 | TRUE |
76 | METSIM | Adipose | FGF11 | 0.07 | 0.00 | bslmm | 477 | 0.02 | 1.5e-04 | 19.959 | -14.7 | 4.9e-49 | -0.52 | 0.72 | 0.06 | FALSE |
77 | METSIM | Adipose | KCNAB3 | 0.06 | 0.04 | enet | 26 | 0.04 | 1.0e-06 | -4.318 | 5.7 | 1.5e-08 | -0.04 | 1.00 | 0.00 | FALSE |
78 | METSIM | Adipose | PFAS | 0.10 | 0.00 | blup | 450 | 0.03 | 1.7e-05 | -8.975 | -6.6 | 5.1e-11 | 0.01 | 0.02 | 0.82 | FALSE |
79 | METSIM | Adipose | RP11-849F2.8 | 0.13 | 0.11 | lasso | 3 | 0.11 | 3.2e-16 | 8.752 | -8.7 | 4.0e-18 | -0.01 | 1.00 | 0.00 | FALSE |
80 | METSIM | Adipose | TNFSF12 | 0.12 | 0.03 | bslmm | 475 | 0.05 | 7.3e-08 | -4.590 | 6.8 | 8.2e-12 | 0.41 | 0.80 | 0.01 | FALSE |
81 | NTR | Blood | C17orf68 | 0.03 | 0.03 | lasso | 3 | 0.03 | 3.9e-11 | 8.987 | -8.9 | 6.5e-19 | 0.00 | 1.00 | 0.00 | FALSE |
82 | NTR | Blood | TNFSF12 | 0.06 | 0.07 | bslmm | 462 | 0.07 | 9.4e-23 | -3.267 | -5.3 | 1.1e-07 | -0.40 | 1.00 | 0.00 | FALSE |
83 | ROSMAP | Brain Pre-frontal Cortex | SOX15 | 0.14 | 0.09 | enet | 30 | 0.09 | 2.6e-11 | 6.710 | -7.0 | 3.7e-12 | -0.22 | 1.00 | 0.00 | FALSE |
84 | ROSMAP | Brain Pre-frontal Cortex | FGF11 | 0.08 | 0.04 | blup | 454 | 0.04 | 1.2e-05 | -6.657 | 9.8 | 1.2e-22 | 0.51 | 0.97 | 0.02 | FALSE |
85 | ROSMAP | Brain Pre-frontal Cortex | NLGN2 | 0.25 | 0.24 | lasso | 2 | 0.24 | 3.0e-30 | 9.057 | -8.8 | 1.4e-18 | -0.33 | 1.00 | 0.00 | FALSE |
86 | ROSMAP | Brain Pre-frontal Cortex | CHRNB1 | 0.11 | 0.08 | lasso | 6 | 0.08 | 7.8e-11 | 20.485 | 21.1 | 3.2e-99 | 0.91 | 0.00 | 1.00 | FALSE |
87 | ROSMAP | Brain Pre-frontal Cortex | SLC16A11 | 0.08 | 0.00 | blup | 473 | 0.02 | 5.8e-04 | 1.461 | 5.2 | 2.1e-07 | 0.39 | 0.05 | 0.13 | FALSE |
88 | ROSMAP | Brain Pre-frontal Cortex | PFAS | 0.08 | 0.02 | enet | 10 | 0.03 | 4.4e-05 | -8.990 | -7.2 | 7.8e-13 | 0.01 | 0.92 | 0.01 | FALSE |
89 | ROSMAP | Brain Pre-frontal Cortex | POLR2A | 0.05 | 0.01 | bslmm | 466 | 0.02 | 1.6e-03 | 19.737 | 12.5 | 6.0e-36 | 0.27 | 0.52 | 0.04 | FALSE |
90 | ROSMAP | Brain Pre-frontal Cortex | VAMP2 | 0.20 | 0.17 | bslmm | 412 | 0.20 | 1.7e-25 | 7.893 | -7.1 | 1.2e-12 | 0.03 | 1.00 | 0.00 | FALSE |
91 | ROSMAP | Brain Pre-frontal Cortex | AC113189.5 | 0.11 | 0.06 | lasso | 6 | 0.06 | 2.1e-08 | 6.716 | -8.6 | 5.4e-18 | -0.32 | 1.00 | 0.00 | FALSE |
92 | YFS | Blood | BCL6B | 0.02 | 0.00 | bslmm | 470 | 0.00 | 2.1e-02 | 4.908 | -12.9 | 2.9e-38 | -0.37 | 0.16 | 0.14 | FALSE |
93 | YFS | Blood | CHRNB1 | 0.04 | 0.02 | lasso | 5 | 0.04 | 8.5e-12 | 20.682 | 21.8 | 3.3e-105 | 0.93 | 0.00 | 1.00 | FALSE |
94 | YFS | Blood | PHF23 | 0.03 | 0.01 | bslmm | 450 | 0.02 | 5.9e-08 | 6.653 | -5.7 | 1.5e-08 | 0.05 | 0.88 | 0.00 | FALSE |
95 | YFS | Blood | TMEM107 | 0.17 | 0.17 | lasso | 5 | 0.19 | 2.0e-61 | -9.098 | -10.5 | 9.3e-26 | 0.02 | 1.00 | 0.00 | TRUE |
96 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AURKB | 0.02 | 0.01 | blup | 49 | 0.01 | 2.9e-03 | 7.849 | -11.5 | 7.8e-31 | 0.03 | 0.01 | 0.40 | FALSE |
97 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C17orf68 | 0.02 | 0.01 | blup | 59 | 0.01 | 1.6e-03 | 7.475 | -8.4 | 4.3e-17 | 0.00 | 0.06 | 0.11 | FALSE |
98 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CHRNB1 | 0.06 | 0.06 | enet | 10 | 0.06 | 1.0e-11 | 20.682 | 18.8 | 1.2e-78 | 0.89 | 0.00 | 1.00 | FALSE |
99 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EFNB3 | 0.06 | 0.05 | lasso | 4 | 0.07 | 2.6e-13 | -5.470 | 7.0 | 2.5e-12 | -0.01 | 1.00 | 0.00 | FALSE |
100 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PFAS | 0.02 | 0.01 | lasso | 3 | 0.01 | 9.7e-03 | -8.975 | -8.7 | 2.8e-18 | 0.02 | 0.01 | 0.93 | FALSE |
101 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SLC25A35 | 0.03 | 0.00 | blup | 50 | 0.01 | 5.6e-04 | -4.918 | -8.3 | 1.4e-16 | 0.02 | 0.01 | 0.84 | FALSE |
102 | The Cancer Genome Atlas | Breast Invasive Carcinoma | VAMP2 | 0.04 | 0.01 | blup | 47 | 0.02 | 2.0e-05 | 7.893 | -9.9 | 4.3e-23 | 0.04 | 0.57 | 0.10 | FALSE |
103 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | CHRNB1 | 0.07 | 0.04 | blup | 57 | 0.05 | 1.6e-03 | 20.485 | 16.9 | 7.8e-64 | 0.90 | 0.01 | 0.79 | FALSE |
104 | The Cancer Genome Atlas | Colon Adenocarcinoma | TNFSF12-TNFSF13 | 0.07 | 0.05 | lasso | 3 | 0.02 | 1.9e-02 | -5.085 | -5.2 | 2.2e-07 | -0.24 | 0.08 | 0.04 | FALSE |
105 | The Cancer Genome Atlas | Colon Adenocarcinoma | VAMP2 | 0.06 | 0.00 | blup | 47 | 0.02 | 2.1e-02 | -8.972 | -6.6 | 3.1e-11 | 0.02 | 0.04 | 0.07 | FALSE |
106 | The Cancer Genome Atlas | Glioblastoma Multiforme | AMAC1L3 | 0.14 | 0.12 | lasso | 3 | 0.12 | 1.8e-04 | 17.327 | -17.1 | 9.1e-66 | -0.92 | 0.01 | 0.78 | FALSE |
107 | The Cancer Genome Atlas | Glioblastoma Multiforme | EIF5A | 0.26 | 0.10 | blup | 51 | 0.05 | 9.7e-03 | 4.869 | -5.1 | 2.7e-07 | 0.05 | 0.03 | 0.38 | TRUE |
108 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ALOXE3 | 0.04 | 0.00 | blup | 77 | 0.01 | 3.4e-02 | -9.138 | -10.3 | 6.3e-25 | 0.08 | 0.01 | 0.60 | FALSE |
109 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C17orf68 | 0.05 | 0.00 | blup | 59 | 0.03 | 3.3e-04 | -9.248 | -12.2 | 3.9e-34 | 0.01 | 0.01 | 0.92 | TRUE |
110 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CHRNB1 | 0.06 | 0.07 | lasso | 6 | 0.07 | 1.8e-08 | 15.557 | 17.0 | 1.3e-64 | 0.65 | 0.53 | 0.47 | FALSE |
111 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LOC100128288 | 0.06 | 0.02 | blup | 43 | 0.03 | 1.9e-04 | -4.686 | 6.7 | 2.4e-11 | -0.01 | 0.09 | 0.26 | FALSE |
112 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CHRNB1 | 0.04 | 0.03 | blup | 57 | 0.02 | 1.5e-03 | -6.823 | 9.4 | 3.7e-21 | 0.63 | 0.06 | 0.27 | FALSE |
113 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC100128288 | 0.06 | 0.03 | blup | 43 | 0.04 | 4.5e-05 | -3.197 | 5.3 | 9.7e-08 | -0.03 | 0.06 | 0.03 | FALSE |
114 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AMAC1L3 | 0.04 | 0.02 | blup | 54 | 0.02 | 3.9e-03 | 13.932 | -13.0 | 7.7e-39 | -0.34 | 0.28 | 0.06 | FALSE |
115 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CHRNB1 | 0.05 | 0.04 | blup | 57 | 0.04 | 6.1e-05 | 17.430 | 19.2 | 4.0e-82 | 0.92 | 0.00 | 1.00 | FALSE |
116 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PFAS | 0.03 | 0.02 | blup | 54 | 0.03 | 1.3e-04 | -7.450 | -7.5 | 5.6e-14 | 0.03 | 0.11 | 0.79 | FALSE |
117 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SHBG | 0.05 | 0.02 | lasso | 3 | 0.02 | 8.1e-04 | 2.382 | -5.4 | 7.8e-08 | -0.45 | 0.05 | 0.57 | TRUE |
118 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TNFSF12 | 0.05 | 0.00 | blup | 56 | 0.01 | 1.2e-02 | -3.267 | -7.0 | 2.7e-12 | -0.37 | 0.14 | 0.05 | FALSE |
119 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TNFSF12-TNFSF13 | 0.07 | 0.01 | enet | 17 | 0.03 | 4.4e-04 | -3.869 | -8.0 | 1.3e-15 | -0.32 | 0.03 | 0.08 | FALSE |
120 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | EFNB3 | 0.07 | -0.01 | blup | 35 | 0.03 | 1.8e-02 | -4.175 | 7.2 | 4.4e-13 | -0.10 | 0.02 | 0.10 | FALSE |
121 | The Cancer Genome Atlas | Lung Adenocarcinoma | CHRNB1 | 0.03 | 0.02 | blup | 57 | 0.02 | 7.8e-04 | 20.682 | 16.4 | 1.5e-60 | 0.84 | 0.00 | 1.00 | FALSE |
122 | The Cancer Genome Atlas | Lung Adenocarcinoma | EFNB3 | 0.05 | 0.05 | enet | 6 | 0.05 | 2.5e-06 | -4.175 | 6.3 | 3.3e-10 | -0.02 | 0.96 | 0.00 | FALSE |
123 | The Cancer Genome Atlas | Lung Adenocarcinoma | GUCY2D | 0.02 | 0.00 | blup | 47 | 0.01 | 1.8e-02 | -4.574 | 5.3 | 1.4e-07 | 0.04 | 0.01 | 0.93 | FALSE |
124 | The Cancer Genome Atlas | Lung Adenocarcinoma | PFAS | 0.04 | 0.03 | blup | 54 | 0.04 | 4.0e-05 | -7.450 | -6.2 | 4.5e-10 | 0.01 | 0.39 | 0.25 | FALSE |
125 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EFNB3 | 0.07 | 0.04 | blup | 34 | 0.04 | 4.0e-05 | -7.810 | 7.3 | 2.0e-13 | 0.07 | 0.16 | 0.07 | FALSE |
126 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EIF5A | 0.03 | 0.03 | blup | 52 | 0.03 | 4.2e-04 | -6.105 | -6.6 | 4.7e-11 | 0.00 | 0.32 | 0.44 | FALSE |
127 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PFAS | 0.02 | 0.01 | blup | 54 | 0.01 | 8.1e-03 | -8.975 | -5.6 | 1.9e-08 | 0.03 | 0.02 | 0.52 | FALSE |
128 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TNFSF12-TNFSF13 | 0.06 | 0.00 | blup | 58 | 0.01 | 3.4e-02 | -1.290 | -13.8 | 3.1e-43 | -0.36 | 0.01 | 0.06 | FALSE |
129 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | PFAS | 0.04 | 0.04 | blup | 50 | 0.03 | 6.7e-03 | -7.447 | -6.8 | 1.5e-11 | 0.02 | 0.04 | 0.67 | FALSE |
130 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ALOXE3 | 0.20 | 0.07 | blup | 80 | 0.11 | 1.7e-05 | 3.984 | -6.1 | 9.0e-10 | 0.07 | 0.02 | 0.13 | FALSE |
131 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | C17orf68 | 0.13 | 0.08 | lasso | 3 | 0.10 | 6.1e-05 | 7.849 | -10.0 | 9.7e-24 | 0.01 | 0.08 | 0.64 | FALSE |
132 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | GUCY2D | 0.14 | 0.04 | lasso | 2 | 0.04 | 9.5e-03 | -4.993 | 5.3 | 1.4e-07 | 0.07 | 0.01 | 0.43 | FALSE |
133 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CHRNB1 | 0.18 | 0.09 | enet | 10 | 0.10 | 4.9e-11 | 20.485 | 19.7 | 5.5e-86 | 0.78 | 0.01 | 0.99 | FALSE |
134 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EFNB3 | 0.06 | 0.03 | lasso | 4 | 0.05 | 1.0e-05 | -7.810 | 7.8 | 8.4e-15 | -0.06 | 0.91 | 0.00 | FALSE |
135 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EIF5A | 0.05 | 0.01 | blup | 53 | 0.01 | 2.3e-02 | -5.252 | -5.4 | 8.0e-08 | 0.00 | 0.15 | 0.04 | FALSE |
136 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SLC25A35 | 0.09 | 0.06 | enet | 12 | 0.11 | 3.9e-11 | -5.750 | -9.1 | 1.1e-19 | 0.00 | 0.01 | 0.99 | FALSE |
137 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TMEM88 | 0.06 | 0.00 | enet | 10 | 0.01 | 6.5e-02 | -5.529 | -6.6 | 3.8e-11 | -0.01 | 0.01 | 0.10 | TRUE |
138 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TNFSF12-TNFSF13 | 0.03 | 0.00 | lasso | 4 | 0.01 | 2.9e-02 | -3.869 | -11.9 | 1.7e-32 | -0.58 | 0.01 | 0.66 | FALSE |
139 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CHRNB1 | 0.07 | 0.03 | enet | 8 | 0.03 | 6.9e-03 | 17.430 | 11.6 | 5.4e-31 | 0.66 | 0.01 | 0.39 | FALSE |
140 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CHRNB1 | 0.06 | 0.00 | blup | 57 | 0.03 | 4.5e-03 | 5.430 | 16.8 | 1.7e-63 | 0.88 | 0.01 | 0.74 | FALSE |
141 | The Cancer Genome Atlas | Thyroid Carcinoma | C17orf44 | 0.04 | 0.01 | enet | 9 | 0.01 | 4.0e-02 | 7.849 | -7.2 | 4.1e-13 | -0.01 | 0.05 | 0.06 | FALSE |
142 | The Cancer Genome Atlas | Thyroid Carcinoma | CHRNB1 | 0.09 | 0.02 | blup | 57 | 0.05 | 2.6e-05 | -6.657 | 17.4 | 6.6e-68 | 0.68 | 0.10 | 0.79 | FALSE |
143 | The Cancer Genome Atlas | Thyroid Carcinoma | EFNB3 | 0.09 | 0.07 | enet | 7 | 0.10 | 1.3e-09 | -7.810 | 6.3 | 3.0e-10 | -0.02 | 0.99 | 0.00 | FALSE |
144 | The Cancer Genome Atlas | Thyroid Carcinoma | FXR2 | 0.04 | 0.03 | lasso | 1 | 0.02 | 1.8e-03 | 9.755 | 9.8 | 1.8e-22 | 0.33 | 0.05 | 0.62 | TRUE |
145 | The Cancer Genome Atlas | Thyroid Carcinoma | SENP3 | 0.07 | 0.04 | enet | 9 | 0.03 | 2.7e-04 | 9.755 | 15.6 | 1.4e-54 | 0.42 | 0.41 | 0.11 | FALSE |
146 | The Cancer Genome Atlas | Thyroid Carcinoma | SHBG | 0.04 | 0.00 | blup | 59 | 0.02 | 4.4e-03 | -2.034 | -11.6 | 4.8e-31 | -0.42 | 0.01 | 0.75 | FALSE |
147 | The Cancer Genome Atlas | Thyroid Carcinoma | TNK1 | 0.10 | 0.02 | enet | 9 | 0.06 | 2.4e-06 | -6.657 | 5.3 | 1.3e-07 | 0.28 | 0.02 | 0.05 | FALSE |
148 | The Cancer Genome Atlas | Thyroid Carcinoma | TRAPPC1 | 0.12 | 0.02 | lasso | 4 | 0.05 | 2.6e-05 | -3.158 | 5.3 | 1.1e-07 | 0.08 | 0.14 | 0.49 | FALSE |
149 | The Cancer Genome Atlas | Thyroid Carcinoma | TXNDC17 | 0.10 | 0.15 | enet | 8 | 0.14 | 6.6e-14 | 5.404 | 5.8 | 7.9e-09 | 0.01 | 0.01 | 0.99 | FALSE |
150 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | GUCY2D | 0.17 | 0.13 | enet | 7 | 0.18 | 9.7e-06 | -4.529 | 5.3 | 1.0e-07 | 0.04 | 0.01 | 0.97 | FALSE |