Best TWAS P=4.03e-23 · Best GWAS P=7.08e-23 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | BBS1 | 0.12 | 0.10 | lasso | 6 | 0.11 | 5.1e-13 | -5.7 | 7.3 | 2.6e-13 | 0.18 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | POLA2 | 0.04 | 0.00 | bslmm | 352 | 0.01 | 6.6e-03 | 1.3 | 6.3 | 3.2e-10 | 0.14 | 0.05 | 0.58 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | PTPRCAP | 0.05 | 0.07 | enet | 12 | 0.07 | 6.0e-09 | 7.0 | -7.1 | 1.6e-12 | -0.16 | 1.00 | 0.00 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | RIN1 | 0.07 | 0.04 | bslmm | 304 | 0.04 | 8.7e-06 | -4.1 | -6.1 | 8.7e-10 | -0.15 | 0.88 | 0.07 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | RNASEH2C | 0.13 | 0.10 | enet | 14 | 0.10 | 4.3e-12 | 4.6 | -6.2 | 4.5e-10 | -0.04 | 0.48 | 0.51 | TRUE |
6 | GTEx | Adipose Subcutaneous | FAU | 0.08 | 0.00 | lasso | 4 | 0.00 | 2.4e-01 | 4.9 | 5.8 | 6.3e-09 | 0.16 | 0.05 | 0.18 | FALSE |
7 | GTEx | Adipose Subcutaneous | RAD9A | 0.43 | 0.22 | lasso | 6 | 0.23 | 7.1e-19 | 9.8 | 9.6 | 1.2e-21 | 0.97 | 0.00 | 1.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | PTPRCAP | 0.14 | 0.17 | lasso | 5 | 0.20 | 4.3e-16 | 6.9 | -6.8 | 1.4e-11 | -0.14 | 1.00 | 0.00 | FALSE |
9 | GTEx | Adipose Subcutaneous | DPP3 | 0.08 | 0.06 | lasso | 9 | 0.06 | 2.1e-05 | -5.5 | 6.0 | 2.6e-09 | 0.14 | 0.92 | 0.06 | FALSE |
10 | GTEx | Adipose Subcutaneous | CTD-3074O7.5 | 0.11 | 0.03 | lasso | 4 | 0.02 | 4.2e-03 | 8.6 | 8.6 | 8.2e-18 | 0.24 | 0.01 | 0.96 | FALSE |
11 | GTEx | Adipose Subcutaneous | AP003419.16 | 0.05 | 0.08 | lasso | 1 | 0.07 | 1.7e-06 | 6.9 | -6.9 | 4.5e-12 | -0.15 | 0.86 | 0.00 | FALSE |
12 | GTEx | Adipose Subcutaneous | CTD-3074O7.12 | 0.13 | 0.08 | lasso | 5 | 0.07 | 1.5e-06 | 8.7 | 8.4 | 3.1e-17 | 0.23 | 0.01 | 0.99 | TRUE |
13 | GTEx | Adipose Visceral Omentum | GSTP1 | 0.11 | 0.12 | lasso | 7 | 0.10 | 6.7e-06 | 4.8 | -5.3 | 8.8e-08 | -0.12 | 0.95 | 0.00 | FALSE |
14 | GTEx | Adipose Visceral Omentum | RPS6KB2 | 0.08 | 0.03 | lasso | 8 | 0.04 | 2.9e-03 | 6.9 | -6.6 | 3.4e-11 | -0.15 | 0.52 | 0.04 | FALSE |
15 | GTEx | Adipose Visceral Omentum | PTPRCAP | 0.10 | 0.08 | enet | 7 | 0.06 | 4.8e-04 | 5.3 | -6.6 | 4.5e-11 | -0.15 | 0.66 | 0.02 | FALSE |
16 | GTEx | Adipose Visceral Omentum | AP003419.16 | 0.09 | 0.05 | enet | 8 | 0.04 | 4.6e-03 | 6.9 | -6.9 | 5.4e-12 | -0.17 | 0.35 | 0.09 | FALSE |
17 | GTEx | Adrenal Gland | RAD9A | 0.46 | 0.08 | lasso | 3 | 0.22 | 2.9e-08 | 1.4 | 6.2 | 7.3e-10 | 0.53 | 0.11 | 0.87 | FALSE |
18 | GTEx | Adrenal Gland | PTPRCAP | 0.14 | 0.03 | enet | 18 | 0.01 | 2.0e-01 | 6.8 | -5.4 | 7.4e-08 | -0.12 | 0.21 | 0.04 | FALSE |
19 | GTEx | Adrenal Gland | CTD-3074O7.12 | 0.28 | 0.00 | enet | 24 | 0.02 | 4.5e-02 | 8.3 | 5.9 | 4.2e-09 | 0.33 | 0.02 | 0.83 | FALSE |
20 | GTEx | Artery Aorta | GSTP1 | 0.10 | 0.07 | enet | 14 | 0.10 | 5.4e-06 | 5.3 | -5.3 | 1.1e-07 | -0.15 | 0.72 | 0.03 | FALSE |
21 | GTEx | Artery Aorta | CTSF | 0.19 | 0.23 | lasso | 7 | 0.24 | 2.3e-13 | -4.2 | -6.1 | 1.4e-09 | -0.20 | 0.66 | 0.34 | FALSE |
22 | GTEx | Artery Aorta | ZDHHC24 | 0.09 | 0.09 | lasso | 2 | 0.06 | 2.0e-04 | -5.7 | -6.0 | 2.3e-09 | -0.14 | 0.45 | 0.36 | FALSE |
23 | GTEx | Artery Aorta | PTPRCAP | 0.11 | 0.07 | enet | 9 | 0.08 | 3.6e-05 | 7.0 | -6.6 | 3.1e-11 | -0.13 | 0.76 | 0.01 | FALSE |
24 | GTEx | Artery Aorta | AP003419.16 | 0.16 | 0.10 | lasso | 3 | 0.10 | 4.5e-06 | 7.0 | -7.0 | 3.5e-12 | -0.15 | 0.87 | 0.00 | FALSE |
25 | GTEx | Artery Tibial | RAD9A | 0.39 | 0.26 | lasso | 2 | 0.24 | 3.5e-19 | 9.8 | 9.9 | 5.1e-23 | 1.00 | 0.00 | 1.00 | FALSE |
26 | GTEx | Artery Tibial | RPS6KB2 | 0.10 | 0.10 | lasso | 1 | 0.10 | 5.9e-08 | 6.9 | -6.9 | 4.2e-12 | -0.15 | 0.99 | 0.00 | FALSE |
27 | GTEx | Artery Tibial | PTPRCAP | 0.18 | 0.25 | lasso | 7 | 0.24 | 5.9e-19 | 7.0 | -7.0 | 2.4e-12 | -0.16 | 1.00 | 0.00 | FALSE |
28 | GTEx | Artery Tibial | DPP3 | 0.07 | 0.04 | lasso | 3 | 0.03 | 3.2e-03 | -5.8 | 5.7 | 1.5e-08 | 0.13 | 0.79 | 0.03 | FALSE |
29 | GTEx | Artery Tibial | AP003419.16 | 0.11 | 0.13 | lasso | 2 | 0.12 | 2.2e-09 | 6.9 | -6.9 | 4.3e-12 | -0.15 | 1.00 | 0.00 | FALSE |
30 | GTEx | Artery Tibial | CTD-3074O7.12 | 0.08 | 0.01 | enet | 15 | 0.03 | 2.6e-03 | 8.4 | 8.4 | 5.2e-17 | 0.23 | 0.04 | 0.94 | FALSE |
31 | GTEx | Brain Caudate basal ganglia | GSTP1 | 0.16 | 0.14 | lasso | 3 | 0.16 | 2.8e-05 | -4.6 | -5.2 | 1.6e-07 | -0.14 | 0.14 | 0.32 | FALSE |
32 | GTEx | Brain Caudate basal ganglia | PTPRCAP | 0.23 | 0.19 | lasso | 4 | 0.21 | 1.0e-06 | 6.9 | -6.8 | 1.3e-11 | -0.18 | 0.77 | 0.04 | FALSE |
33 | GTEx | Brain Cerebellar Hemisphere | GSTP1 | 0.25 | 0.15 | enet | 16 | 0.20 | 8.7e-06 | 5.7 | -7.5 | 8.1e-14 | -0.33 | 0.53 | 0.34 | FALSE |
34 | GTEx | Brain Cerebellar Hemisphere | PTPRCAP | 0.39 | 0.43 | lasso | 8 | 0.47 | 7.7e-14 | 6.9 | -6.9 | 5.2e-12 | -0.16 | 1.00 | 0.00 | FALSE |
35 | GTEx | Brain Cerebellar Hemisphere | AP003419.16 | 0.20 | 0.01 | lasso | 4 | 0.05 | 1.7e-02 | 5.9 | -6.4 | 1.4e-10 | -0.20 | 0.04 | 0.17 | FALSE |
36 | GTEx | Brain Cerebellum | MRPL11 | 0.16 | -0.01 | lasso | 5 | -0.01 | 7.3e-01 | -5.5 | 5.4 | 6.2e-08 | 0.15 | 0.06 | 0.23 | FALSE |
37 | GTEx | Brain Cerebellum | PTPRCAP | 0.39 | 0.48 | lasso | 7 | 0.46 | 3.8e-15 | 6.9 | -7.1 | 1.2e-12 | -0.17 | 1.00 | 0.00 | FALSE |
38 | GTEx | Brain Cerebellum | CTD-3074O7.12 | 0.15 | 0.12 | enet | 14 | 0.08 | 2.5e-03 | -5.7 | 7.4 | 1.0e-13 | 0.19 | 0.09 | 0.23 | FALSE |
39 | GTEx | Brain Cortex | CDCA5 | 0.21 | 0.03 | lasso | 4 | 0.04 | 2.5e-02 | 6.0 | 6.2 | 5.9e-10 | 0.05 | 0.01 | 0.93 | FALSE |
40 | GTEx | Brain Cortex | PTPRCAP | 0.22 | 0.09 | enet | 24 | 0.04 | 3.8e-02 | 7.0 | -7.0 | 2.0e-12 | -0.17 | 0.32 | 0.04 | FALSE |
41 | GTEx | Brain Cortex | CTD-3074O7.12 | 0.19 | 0.01 | enet | 25 | 0.02 | 9.8e-02 | -5.7 | 6.2 | 5.2e-10 | 0.17 | 0.04 | 0.43 | FALSE |
42 | GTEx | Brain Frontal Cortex BA9 | PTPRCAP | 0.21 | 0.11 | enet | 15 | 0.15 | 9.6e-05 | 6.9 | -7.0 | 3.4e-12 | -0.16 | 0.55 | 0.03 | FALSE |
43 | GTEx | Brain Hippocampus | PTPRCAP | 0.16 | 0.13 | lasso | 4 | 0.18 | 6.2e-05 | 6.9 | -6.4 | 1.2e-10 | -0.15 | 0.15 | 0.05 | FALSE |
44 | GTEx | Brain Hypothalamus | GSTP1 | 0.29 | 0.28 | lasso | 3 | 0.26 | 9.3e-07 | 5.3 | -5.3 | 8.6e-08 | -0.12 | 0.52 | 0.05 | FALSE |
45 | GTEx | Brain Hypothalamus | PTPRCAP | 0.17 | 0.21 | lasso | 4 | 0.19 | 3.1e-05 | 6.9 | -7.0 | 2.6e-12 | -0.16 | 0.31 | 0.09 | FALSE |
46 | GTEx | Brain Nucleus accumbens basal ganglia | GSTP1 | 0.23 | 0.11 | lasso | 5 | 0.14 | 1.8e-04 | 4.8 | -5.8 | 7.9e-09 | -0.14 | 0.48 | 0.04 | FALSE |
47 | GTEx | Brain Nucleus accumbens basal ganglia | PTPRCAP | 0.35 | 0.36 | lasso | 7 | 0.38 | 2.7e-11 | 6.9 | -7.2 | 4.5e-13 | -0.17 | 0.99 | 0.00 | FALSE |
48 | GTEx | Brain Putamen basal ganglia | PTPRCAP | 0.24 | 0.26 | lasso | 4 | 0.22 | 6.2e-06 | 6.9 | -6.9 | 4.0e-12 | -0.16 | 0.62 | 0.02 | FALSE |
49 | GTEx | Breast Mammary Tissue | GSTP1 | 0.23 | 0.14 | lasso | 5 | 0.13 | 4.7e-07 | 5.3 | -5.3 | 1.2e-07 | -0.11 | 0.97 | 0.00 | FALSE |
50 | GTEx | Breast Mammary Tissue | PTPRCAP | 0.18 | 0.26 | lasso | 3 | 0.24 | 2.0e-12 | 6.8 | -6.9 | 5.6e-12 | -0.16 | 1.00 | 0.00 | FALSE |
51 | GTEx | Breast Mammary Tissue | AP003419.16 | 0.19 | 0.06 | lasso | 5 | 0.05 | 2.3e-03 | 5.9 | -6.7 | 2.2e-11 | -0.16 | 0.16 | 0.18 | FALSE |
52 | GTEx | Breast Mammary Tissue | CTD-3074O7.12 | 0.13 | 0.05 | enet | 9 | 0.05 | 1.4e-03 | -5.8 | 6.8 | 7.2e-12 | 0.18 | 0.13 | 0.58 | FALSE |
53 | GTEx | Breast Mammary Tissue (Male) | GSTP1 | 0.11 | -0.01 | lasso | 2 | -0.01 | 7.7e-01 | 5.3 | -5.2 | 2.2e-07 | -0.40 | 0.02 | 0.42 | FALSE |
54 | GTEx | Breast Mammary Tissue (Male) | NDUFV1 | 0.11 | 0.05 | enet | 8 | 0.03 | 5.6e-02 | -4.6 | 6.3 | 3.6e-10 | 0.13 | 0.07 | 0.06 | FALSE |
55 | GTEx | Breast Mammary Tissue (Male) | DPP3 | 0.14 | -0.01 | lasso | 1 | -0.01 | 7.5e-01 | -5.4 | 5.4 | 5.5e-08 | 0.13 | 0.03 | 0.10 | FALSE |
56 | GTEx | Breast Mammary Tissue (Male) | CTD-3074O7.12 | 0.16 | 0.12 | lasso | 2 | 0.07 | 1.3e-02 | -5.8 | 5.7 | 1.3e-08 | 0.13 | 0.12 | 0.07 | FALSE |
57 | GTEx | Breast Mammary Tissue (Female) | GSTP1 | 0.26 | 0.10 | lasso | 1 | 0.09 | 1.2e-03 | 5.3 | -5.3 | 9.9e-08 | -0.12 | 0.09 | 0.05 | FALSE |
58 | GTEx | Breast Mammary Tissue (Female) | B3GNT1 | 0.03 | 0.00 | enet | 4 | 0.00 | 4.2e-01 | 4.3 | 5.1 | 3.0e-07 | 0.02 | 0.03 | 0.13 | FALSE |
59 | GTEx | Cells EBV-transformed lymphocytes | CCS | 0.21 | 0.24 | enet | 11 | 0.21 | 2.0e-07 | -8.0 | 7.9 | 2.1e-15 | 0.22 | 0.58 | 0.40 | FALSE |
60 | GTEx | Cells Transformed fibroblasts | NAALADL1 | 0.08 | 0.04 | enet | 15 | 0.08 | 8.2e-07 | -2.6 | 5.2 | 2.5e-07 | -0.01 | 0.10 | 0.87 | FALSE |
61 | GTEx | Cells Transformed fibroblasts | RAD9A | 0.24 | 0.16 | lasso | 3 | 0.16 | 3.6e-12 | 9.8 | 9.4 | 6.6e-21 | 0.92 | 0.00 | 1.00 | FALSE |
62 | GTEx | Cells Transformed fibroblasts | RPS6KB2 | 0.19 | 0.28 | lasso | 3 | 0.27 | 1.7e-20 | 6.9 | -6.8 | 8.4e-12 | -0.16 | 1.00 | 0.00 | FALSE |
63 | GTEx | Cells Transformed fibroblasts | PTPRCAP | 0.15 | 0.13 | enet | 34 | 0.16 | 9.5e-12 | 7.0 | -5.7 | 1.1e-08 | -0.15 | 1.00 | 0.00 | FALSE |
64 | GTEx | Cells Transformed fibroblasts | DPP3 | 0.07 | 0.06 | lasso | 3 | 0.07 | 9.2e-06 | -5.5 | 6.5 | 8.2e-11 | 0.14 | 0.73 | 0.06 | FALSE |
65 | GTEx | Cells Transformed fibroblasts | AP003419.16 | 0.21 | 0.22 | lasso | 6 | 0.21 | 1.6e-15 | 6.9 | -6.6 | 4.3e-11 | -0.18 | 1.00 | 0.00 | FALSE |
66 | GTEx | Colon Sigmoid | CTD-3074O7.12 | 0.11 | 0.01 | lasso | 4 | 0.02 | 4.5e-02 | 8.2 | 8.6 | 5.6e-18 | 0.27 | 0.02 | 0.84 | FALSE |
67 | GTEx | Colon Transverse | RAD9A | 0.40 | 0.16 | lasso | 8 | 0.16 | 7.2e-08 | 9.8 | 9.9 | 4.0e-23 | 0.88 | 0.00 | 1.00 | TRUE |
68 | GTEx | Colon Transverse | PTPRCAP | 0.14 | 0.06 | lasso | 7 | 0.07 | 3.8e-04 | 6.8 | -6.9 | 5.3e-12 | -0.16 | 0.73 | 0.01 | TRUE |
69 | GTEx | Colon Transverse | CTD-3074O7.5 | 0.12 | 0.05 | lasso | 7 | 0.06 | 8.9e-04 | -5.5 | 7.8 | 7.9e-15 | 0.20 | 0.06 | 0.78 | FALSE |
70 | GTEx | Colon Transverse | AP003419.16 | 0.14 | 0.06 | enet | 15 | 0.06 | 7.2e-04 | 6.9 | -5.5 | 3.0e-08 | -0.13 | 0.38 | 0.03 | FALSE |
71 | GTEx | Esophagus Gastroesophageal Junction | KCNK7 | 0.28 | 0.01 | enet | 42 | 0.15 | 5.9e-06 | 4.5 | -5.5 | 5.1e-08 | 0.05 | 0.04 | 0.40 | TRUE |
72 | GTEx | Esophagus Gastroesophageal Junction | PTPRCAP | 0.35 | 0.32 | lasso | 7 | 0.34 | 6.1e-13 | 6.9 | -6.7 | 1.7e-11 | -0.16 | 1.00 | 0.00 | FALSE |
73 | GTEx | Esophagus Gastroesophageal Junction | AP003419.16 | 0.25 | 0.18 | lasso | 16 | 0.18 | 6.7e-07 | 7.0 | -6.7 | 2.1e-11 | -0.14 | 0.89 | 0.01 | FALSE |
74 | GTEx | Esophagus Gastroesophageal Junction | CTD-3074O7.12 | 0.11 | 0.00 | enet | 7 | 0.01 | 9.7e-02 | 8.5 | 7.9 | 2.6e-15 | 0.23 | 0.04 | 0.84 | FALSE |
75 | GTEx | Esophagus Mucosa | RNASEH2C | 0.11 | 0.07 | enet | 15 | 0.07 | 1.6e-05 | 4.6 | -5.5 | 4.8e-08 | -0.03 | 0.36 | 0.47 | FALSE |
76 | GTEx | Esophagus Mucosa | RPS6KB2 | 0.12 | 0.09 | lasso | 3 | 0.11 | 1.1e-07 | 7.0 | -6.4 | 1.8e-10 | -0.20 | 0.97 | 0.00 | FALSE |
77 | GTEx | Esophagus Mucosa | DPP3 | 0.25 | 0.10 | enet | 18 | 0.14 | 8.1e-10 | 8.4 | 6.3 | 3.4e-10 | 0.00 | 0.02 | 0.98 | FALSE |
78 | GTEx | Esophagus Mucosa | CTD-3074O7.5 | 0.25 | 0.11 | lasso | 4 | 0.19 | 5.1e-13 | 8.6 | 8.2 | 2.4e-16 | 0.23 | 0.02 | 0.98 | FALSE |
79 | GTEx | Esophagus Mucosa | AP003419.16 | 0.18 | 0.15 | lasso | 3 | 0.18 | 7.8e-12 | 6.9 | -6.7 | 2.1e-11 | -0.18 | 1.00 | 0.00 | FALSE |
80 | GTEx | Esophagus Mucosa | CTD-3074O7.12 | 0.10 | 0.04 | lasso | 7 | 0.04 | 1.9e-03 | 8.7 | 8.3 | 9.4e-17 | 0.24 | 0.02 | 0.96 | FALSE |
81 | GTEx | Esophagus Muscularis | POLA2 | 0.07 | 0.04 | lasso | 3 | 0.06 | 2.8e-04 | -3.0 | 5.6 | 2.5e-08 | 0.06 | 0.04 | 0.74 | FALSE |
82 | GTEx | Esophagus Muscularis | GSTP1 | 0.16 | 0.18 | lasso | 3 | 0.16 | 9.1e-10 | 5.3 | -5.4 | 5.6e-08 | -0.14 | 1.00 | 0.00 | FALSE |
83 | GTEx | Esophagus Muscularis | RAD9A | 0.25 | 0.26 | lasso | 2 | 0.26 | 6.2e-16 | 9.8 | 9.3 | 2.0e-20 | 0.99 | 0.00 | 1.00 | FALSE |
84 | GTEx | Esophagus Muscularis | CTSF | 0.57 | 0.27 | enet | 26 | 0.29 | 9.3e-18 | -4.2 | -6.4 | 1.3e-10 | -0.23 | 0.98 | 0.02 | FALSE |
85 | GTEx | Esophagus Muscularis | RPS6KB2 | 0.28 | 0.20 | lasso | 3 | 0.18 | 3.0e-11 | 6.9 | -6.6 | 3.6e-11 | -0.12 | 1.00 | 0.00 | FALSE |
86 | GTEx | Esophagus Muscularis | PTPRCAP | 0.21 | 0.26 | lasso | 4 | 0.26 | 9.2e-16 | 7.0 | -7.0 | 3.1e-12 | -0.16 | 1.00 | 0.00 | FALSE |
87 | GTEx | Esophagus Muscularis | CTD-3074O7.5 | 0.22 | 0.02 | enet | 17 | 0.09 | 3.7e-06 | -5.7 | 5.7 | 1.1e-08 | -0.03 | 0.12 | 0.78 | FALSE |
88 | GTEx | Esophagus Muscularis | AP003419.16 | 0.19 | 0.17 | lasso | 3 | 0.18 | 7.3e-11 | 6.9 | -6.9 | 4.5e-12 | -0.15 | 1.00 | 0.00 | FALSE |
89 | GTEx | Heart Atrial Appendage | RPS6KB2 | 0.16 | 0.09 | lasso | 9 | 0.07 | 3.5e-04 | 6.9 | -6.9 | 5.3e-12 | -0.18 | 0.53 | 0.05 | FALSE |
90 | GTEx | Heart Atrial Appendage | PTPRCAP | 0.14 | 0.11 | lasso | 10 | 0.09 | 5.1e-05 | 6.9 | -7.0 | 1.9e-12 | -0.24 | 0.67 | 0.03 | FALSE |
91 | GTEx | Heart Atrial Appendage | AP003419.16 | 0.11 | 0.10 | lasso | 5 | 0.12 | 4.4e-06 | 6.9 | -6.8 | 1.5e-11 | -0.15 | 0.80 | 0.01 | FALSE |
92 | GTEx | Heart Left Ventricle | RPS6KB2 | 0.14 | 0.14 | lasso | 4 | 0.15 | 2.6e-08 | 6.9 | -6.9 | 3.8e-12 | -0.16 | 0.99 | 0.00 | FALSE |
93 | GTEx | Heart Left Ventricle | PTPRCAP | 0.15 | 0.22 | enet | 10 | 0.22 | 5.2e-12 | 7.0 | -6.5 | 8.9e-11 | -0.10 | 1.00 | 0.00 | FALSE |
94 | GTEx | Heart Left Ventricle | AP003419.16 | 0.19 | 0.16 | lasso | 5 | 0.16 | 6.8e-09 | 6.9 | -6.8 | 7.1e-12 | -0.15 | 1.00 | 0.00 | FALSE |
95 | GTEx | Liver | CDK2AP2 | 0.30 | -0.01 | lasso | 7 | -0.01 | 4.9e-01 | 3.0 | 7.2 | 8.3e-13 | 0.46 | 0.02 | 0.47 | FALSE |
96 | GTEx | Lung | CTSF | 0.11 | 0.10 | enet | 7 | 0.10 | 6.9e-08 | -4.2 | -6.4 | 1.2e-10 | -0.24 | 0.52 | 0.44 | FALSE |
97 | GTEx | Lung | DPP3 | 0.09 | 0.08 | enet | 9 | 0.07 | 3.8e-06 | -5.4 | 5.6 | 1.9e-08 | 0.13 | 0.99 | 0.00 | FALSE |
98 | GTEx | Lung | CTD-3074O7.5 | 0.08 | 0.02 | lasso | 6 | 0.01 | 3.7e-02 | -5.5 | 7.9 | 2.1e-15 | 0.23 | 0.03 | 0.87 | FALSE |
99 | GTEx | Muscle Skeletal | GSTP1 | 0.07 | 0.08 | lasso | 9 | 0.07 | 1.0e-07 | 5.3 | -5.9 | 4.0e-09 | -0.15 | 0.99 | 0.00 | FALSE |
100 | GTEx | Muscle Skeletal | RAD9A | 0.12 | 0.02 | lasso | 4 | 0.03 | 4.2e-04 | 9.8 | 9.6 | 5.8e-22 | 0.83 | 0.00 | 0.99 | FALSE |
101 | GTEx | Muscle Skeletal | CTSF | 0.05 | 0.02 | enet | 6 | 0.05 | 5.0e-06 | -4.8 | -7.3 | 2.5e-13 | -0.29 | 0.36 | 0.51 | FALSE |
102 | GTEx | Muscle Skeletal | RPS6KB2 | 0.17 | 0.20 | lasso | 3 | 0.20 | 8.3e-19 | 6.9 | -6.9 | 5.5e-12 | -0.15 | 1.00 | 0.00 | FALSE |
103 | GTEx | Muscle Skeletal | PTPRCAP | 0.09 | 0.08 | lasso | 6 | 0.09 | 2.6e-09 | 7.0 | -6.9 | 6.8e-12 | -0.16 | 1.00 | 0.00 | FALSE |
104 | GTEx | Muscle Skeletal | AP003419.16 | 0.19 | 0.21 | lasso | 2 | 0.20 | 1.4e-19 | 6.9 | -6.9 | 3.8e-12 | -0.15 | 1.00 | 0.00 | FALSE |
105 | GTEx | Nerve Tibial | RAD9A | 0.53 | 0.24 | lasso | 10 | 0.23 | 5.6e-16 | 9.8 | 9.4 | 4.9e-21 | 0.99 | 0.00 | 1.00 | FALSE |
106 | GTEx | Nerve Tibial | CTSF | 0.06 | 0.01 | lasso | 3 | 0.01 | 7.1e-02 | 8.6 | -7.8 | 5.8e-15 | -0.24 | 0.02 | 0.94 | FALSE |
107 | GTEx | Nerve Tibial | PTPRCAP | 0.33 | 0.38 | enet | 14 | 0.47 | 2.1e-37 | 7.0 | -6.8 | 8.0e-12 | -0.15 | 1.00 | 0.00 | FALSE |
108 | GTEx | Nerve Tibial | SIPA1 | 0.17 | 0.01 | enet | 19 | 0.06 | 6.8e-05 | -3.3 | 5.2 | 1.7e-07 | 0.02 | 0.26 | 0.22 | FALSE |
109 | GTEx | Nerve Tibial | CTD-3074O7.5 | 0.14 | 0.11 | lasso | 3 | 0.11 | 4.9e-08 | -5.5 | 6.3 | 2.6e-10 | 0.15 | 0.76 | 0.21 | FALSE |
110 | GTEx | Nerve Tibial | AP003419.16 | 0.08 | 0.04 | lasso | 9 | 0.04 | 4.0e-04 | 7.0 | -5.9 | 4.7e-09 | -0.09 | 0.45 | 0.03 | FALSE |
111 | GTEx | Nerve Tibial | CTD-3074O7.12 | 0.14 | 0.10 | lasso | 8 | 0.11 | 5.6e-08 | -5.8 | 7.1 | 1.5e-12 | 0.17 | 0.72 | 0.28 | FALSE |
112 | GTEx | Ovary | PTPRCAP | 0.35 | 0.28 | enet | 13 | 0.26 | 5.3e-07 | 7.0 | -7.0 | 2.5e-12 | -0.16 | 0.78 | 0.01 | FALSE |
113 | GTEx | Pancreas | PTPRCAP | 0.19 | 0.14 | enet | 28 | 0.13 | 4.3e-06 | 6.8 | -5.7 | 1.2e-08 | -0.09 | 0.94 | 0.01 | FALSE |
114 | GTEx | Pancreas | DPP3 | 0.19 | 0.13 | lasso | 8 | 0.14 | 1.4e-06 | -5.5 | 5.5 | 4.7e-08 | 0.15 | 0.92 | 0.04 | FALSE |
115 | GTEx | Pancreas | AP003419.16 | 0.11 | 0.05 | enet | 14 | 0.07 | 8.4e-04 | 7.0 | -6.4 | 1.3e-10 | -0.18 | 0.53 | 0.03 | FALSE |
116 | GTEx | Pituitary | PTPRCAP | 0.24 | 0.33 | lasso | 6 | 0.26 | 4.0e-07 | 6.9 | -6.9 | 5.3e-12 | -0.16 | 0.90 | 0.01 | FALSE |
117 | GTEx | Prostate | PTPRCAP | 0.28 | 0.22 | enet | 10 | 0.22 | 3.8e-06 | 6.8 | -6.7 | 2.0e-11 | -0.16 | 0.46 | 0.04 | FALSE |
118 | GTEx | Skin Not Sun Exposed Suprapubic | CTSF | 0.09 | 0.02 | lasso | 3 | 0.04 | 2.2e-03 | -5.0 | -6.8 | 7.8e-12 | -0.19 | 0.33 | 0.08 | FALSE |
119 | GTEx | Skin Not Sun Exposed Suprapubic | PTPRCAP | 0.22 | 0.14 | enet | 19 | 0.15 | 1.8e-08 | 7.0 | -7.0 | 3.4e-12 | -0.18 | 1.00 | 0.00 | FALSE |
120 | GTEx | Skin Not Sun Exposed Suprapubic | DPP3 | 0.08 | 0.09 | lasso | 1 | 0.08 | 2.3e-05 | -5.6 | 5.6 | 2.0e-08 | 0.13 | 0.70 | 0.06 | FALSE |
121 | GTEx | Skin Not Sun Exposed Suprapubic | CTD-3074O7.5 | 0.14 | 0.03 | lasso | 8 | 0.04 | 1.8e-03 | 8.5 | 8.3 | 9.8e-17 | 0.23 | 0.02 | 0.94 | FALSE |
122 | GTEx | Skin Not Sun Exposed Suprapubic | AP003419.16 | 0.15 | 0.08 | lasso | 5 | 0.08 | 6.2e-05 | 6.9 | -6.1 | 8.3e-10 | -0.21 | 0.50 | 0.02 | FALSE |
123 | GTEx | Skin Sun Exposed Lower leg | KCNK7 | 0.07 | 0.03 | lasso | 5 | 0.02 | 1.6e-02 | 5.5 | 5.5 | 3.5e-08 | -0.06 | 0.02 | 0.97 | FALSE |
124 | GTEx | Skin Sun Exposed Lower leg | RPS6KB2 | 0.11 | 0.10 | lasso | 4 | 0.09 | 4.0e-08 | 6.9 | -6.0 | 2.0e-09 | -0.06 | 0.99 | 0.00 | FALSE |
125 | GTEx | Skin Sun Exposed Lower leg | PTPRCAP | 0.24 | 0.19 | lasso | 8 | 0.22 | 4.8e-18 | 6.9 | -6.2 | 4.7e-10 | -0.08 | 1.00 | 0.00 | FALSE |
126 | GTEx | Skin Sun Exposed Lower leg | DPP3 | 0.08 | 0.08 | lasso | 2 | 0.07 | 3.4e-06 | -5.5 | 5.5 | 4.9e-08 | 0.13 | 0.93 | 0.00 | FALSE |
127 | GTEx | Skin Sun Exposed Lower leg | AP003419.16 | 0.14 | 0.14 | lasso | 6 | 0.13 | 9.4e-11 | 6.9 | -6.9 | 7.1e-12 | -0.14 | 1.00 | 0.00 | FALSE |
128 | GTEx | Skin Sun Exposed Lower leg | CTD-3074O7.12 | 0.15 | 0.07 | lasso | 4 | 0.04 | 1.7e-04 | 8.7 | 8.0 | 1.8e-15 | 0.22 | 0.01 | 0.99 | FALSE |
129 | GTEx | Small Intestine Terminal Ileum | CTSF | 0.23 | 0.10 | lasso | 1 | 0.04 | 5.1e-02 | -5.5 | 5.5 | 3.8e-08 | 0.13 | 0.06 | 0.12 | FALSE |
130 | GTEx | Small Intestine Terminal Ileum | DPP3 | 0.15 | 0.02 | lasso | 3 | 0.01 | 1.5e-01 | -5.5 | 5.6 | 2.5e-08 | 0.12 | 0.08 | 0.18 | FALSE |
131 | GTEx | Spleen | CCS | 0.20 | 0.19 | lasso | 4 | 0.22 | 3.1e-06 | 8.7 | 8.7 | 2.4e-18 | 0.23 | 0.02 | 0.97 | FALSE |
132 | GTEx | Stomach | DPP3 | 0.17 | 0.01 | enet | 9 | 0.04 | 4.9e-03 | -5.5 | 5.2 | 1.7e-07 | 0.12 | 0.40 | 0.08 | FALSE |
133 | GTEx | Stomach | AP003419.16 | 0.12 | 0.11 | lasso | 4 | 0.08 | 1.4e-04 | 6.9 | -6.9 | 6.1e-12 | -0.15 | 0.41 | 0.03 | FALSE |
134 | GTEx | Testis | GSTP1 | 0.09 | 0.11 | lasso | 2 | 0.08 | 3.1e-04 | 5.3 | -5.3 | 9.1e-08 | -0.12 | 0.51 | 0.05 | FALSE |
135 | GTEx | Testis | AIP | 0.11 | 0.14 | lasso | 2 | 0.11 | 1.5e-05 | 6.8 | -7.0 | 3.0e-12 | -0.18 | 0.85 | 0.02 | FALSE |
136 | GTEx | Testis | RAD9A | 0.72 | 0.50 | lasso | 4 | 0.49 | 1.1e-24 | 9.8 | 9.8 | 1.3e-22 | 1.00 | 0.00 | 1.00 | FALSE |
137 | GTEx | Testis | BBS1 | 0.07 | 0.10 | lasso | 2 | 0.07 | 6.3e-04 | 8.7 | -8.6 | 6.6e-18 | -0.25 | 0.02 | 0.89 | FALSE |
138 | GTEx | Testis | RAB1B | 0.15 | -0.01 | lasso | 5 | 0.00 | 3.6e-01 | 3.6 | 6.8 | 1.2e-11 | 0.09 | 0.03 | 0.58 | FALSE |
139 | GTEx | Testis | RPS6KB2 | 0.20 | 0.16 | lasso | 11 | 0.16 | 8.3e-08 | 6.9 | -7.0 | 2.2e-12 | -0.17 | 1.00 | 0.00 | FALSE |
140 | GTEx | Testis | PTPRCAP | 0.19 | 0.24 | enet | 13 | 0.24 | 7.9e-11 | 7.0 | -6.6 | 5.0e-11 | -0.14 | 1.00 | 0.00 | FALSE |
141 | GTEx | Testis | DPP3 | 0.10 | 0.06 | lasso | 4 | 0.07 | 5.3e-04 | -4.4 | -6.3 | 3.3e-10 | -0.18 | 0.05 | 0.74 | FALSE |
142 | GTEx | Testis | CTD-3074O7.5 | 0.22 | 0.16 | enet | 16 | 0.19 | 8.0e-09 | -5.8 | -6.8 | 1.2e-11 | -0.18 | 0.93 | 0.07 | FALSE |
143 | GTEx | Testis | AP003419.16 | 0.22 | 0.18 | lasso | 8 | 0.18 | 1.3e-08 | 6.9 | -7.0 | 1.7e-12 | -0.16 | 1.00 | 0.00 | FALSE |
144 | GTEx | Thyroid | RAD9A | 0.27 | 0.07 | lasso | 6 | 0.20 | 1.8e-15 | 9.8 | 7.0 | 1.7e-12 | 0.70 | 0.00 | 1.00 | FALSE |
145 | GTEx | Thyroid | CTSF | 0.06 | 0.01 | enet | 13 | 0.03 | 2.3e-03 | 8.5 | -8.1 | 6.7e-16 | -0.24 | 0.01 | 0.98 | TRUE |
146 | GTEx | Thyroid | BRMS1 | 0.05 | 0.02 | lasso | 4 | 0.01 | 2.6e-02 | -5.0 | 5.8 | 6.2e-09 | 0.15 | 0.13 | 0.04 | FALSE |
147 | GTEx | Thyroid | PTPRCAP | 0.17 | 0.19 | lasso | 4 | 0.21 | 1.1e-15 | 7.0 | -7.0 | 2.8e-12 | -0.16 | 1.00 | 0.00 | FALSE |
148 | GTEx | Thyroid | DPP3 | 0.10 | 0.06 | enet | 12 | 0.06 | 1.0e-05 | -5.5 | 7.1 | 1.2e-12 | 0.16 | 0.79 | 0.18 | FALSE |
149 | GTEx | Thyroid | CTD-3074O7.5 | 0.37 | 0.01 | lasso | 8 | 0.01 | 4.6e-02 | 8.7 | 8.4 | 3.1e-17 | 0.22 | 0.01 | 0.98 | FALSE |
150 | GTEx | Thyroid | AP003419.16 | 0.09 | 0.06 | lasso | 4 | 0.05 | 1.8e-04 | 7.0 | -6.1 | 8.4e-10 | -0.15 | 0.73 | 0.01 | FALSE |
151 | GTEx | Thyroid | CTD-3074O7.12 | 0.11 | 0.07 | lasso | 3 | 0.05 | 8.6e-05 | 8.5 | 8.5 | 1.5e-17 | 0.24 | 0.01 | 0.99 | FALSE |
152 | GTEx | Uterus | PTPRCAP | 0.28 | 0.15 | lasso | 5 | 0.15 | 5.5e-04 | 5.9 | -6.6 | 3.9e-11 | -0.17 | 0.14 | 0.07 | FALSE |
153 | GTEx | Vagina | PTPRCAP | 0.33 | 0.05 | enet | 8 | 0.06 | 2.0e-02 | 7.0 | -6.9 | 6.8e-12 | -0.16 | 0.09 | 0.06 | FALSE |
154 | GTEx | Vagina | CTD-3074O7.5 | 0.17 | 0.16 | lasso | 5 | 0.11 | 1.7e-03 | -5.5 | 5.5 | 3.3e-08 | 0.14 | 0.21 | 0.06 | FALSE |
155 | GTEx | Whole Blood | RPS6KA4 | 0.08 | 0.08 | enet | 3 | 0.06 | 4.6e-06 | 5.5 | -5.8 | 6.3e-09 | 0.02 | 0.65 | 0.30 | FALSE |
156 | GTEx | Whole Blood | CTSF | 0.04 | 0.01 | lasso | 5 | 0.01 | 2.8e-02 | -4.2 | -5.4 | 7.2e-08 | -0.18 | 0.12 | 0.75 | FALSE |
157 | GTEx | Whole Blood | CTD-3074O7.5 | 0.07 | 0.05 | lasso | 4 | 0.04 | 1.3e-04 | -5.5 | 6.7 | 1.9e-11 | 0.17 | 0.18 | 0.58 | FALSE |
158 | METSIM | Adipose | AP003774.6 | 0.04 | 0.05 | lasso | 3 | 0.05 | 1.8e-07 | 5.6 | -5.7 | 1.1e-08 | 0.02 | 0.91 | 0.06 | FALSE |
159 | METSIM | Adipose | CTD-3074O7.12 | 0.12 | 0.12 | bslmm | 265 | 0.12 | 4.2e-18 | -5.5 | 7.3 | 2.4e-13 | 0.24 | 1.00 | 0.00 | FALSE |
160 | METSIM | Adipose | CTSF | 0.09 | 0.00 | bslmm | 256 | 0.04 | 2.0e-06 | -4.2 | -5.6 | 1.8e-08 | -0.15 | 0.14 | 0.26 | FALSE |
161 | METSIM | Adipose | DPP3 | 0.06 | 0.04 | blup | 284 | 0.04 | 2.6e-07 | -5.6 | 8.3 | 8.1e-17 | 0.20 | 0.73 | 0.27 | FALSE |
162 | METSIM | Adipose | GSTP1 | 0.05 | 0.05 | lasso | 6 | 0.04 | 9.3e-07 | 5.3 | -5.7 | 1.5e-08 | -0.13 | 1.00 | 0.00 | FALSE |
163 | METSIM | Adipose | LRFN4 | 0.02 | 0.01 | bslmm | 223 | 0.01 | 2.6e-03 | -7.6 | 5.2 | 2.4e-07 | 0.16 | 0.27 | 0.02 | FALSE |
164 | METSIM | Adipose | PTPRCAP | 0.03 | 0.02 | lasso | 4 | 0.02 | 1.7e-04 | 5.9 | -6.5 | 7.5e-11 | -0.17 | 0.74 | 0.01 | FALSE |
165 | METSIM | Adipose | RBM14 | 0.02 | 0.00 | blup | 257 | 0.01 | 4.8e-02 | -6.6 | 6.8 | 1.2e-11 | 0.25 | 0.04 | 0.27 | FALSE |
166 | METSIM | Adipose | RNASEH2C | 0.07 | 0.03 | blup | 325 | 0.04 | 3.4e-07 | 4.6 | -5.9 | 3.5e-09 | 0.00 | 0.22 | 0.75 | FALSE |
167 | METSIM | Adipose | VEGFB | 0.12 | 0.06 | enet | 17 | 0.08 | 6.5e-12 | 5.6 | -6.5 | 9.1e-11 | 0.05 | 0.38 | 0.62 | FALSE |
168 | NTR | Blood | CCS | 0.03 | 0.04 | lasso | 2 | 0.04 | 1.2e-11 | -7.9 | 7.9 | 2.4e-15 | 0.23 | 0.80 | 0.20 | FALSE |
169 | ROSMAP | Brain Pre-frontal Cortex | POLA2 | 0.04 | 0.04 | bslmm | 339 | 0.03 | 4.6e-05 | -4.7 | 5.5 | 3.5e-08 | 0.05 | 0.46 | 0.54 | FALSE |
170 | ROSMAP | Brain Pre-frontal Cortex | GSTP1 | 0.25 | 0.38 | lasso | 7 | 0.42 | 6.1e-58 | 4.8 | -5.3 | 1.2e-07 | -0.11 | 1.00 | 0.00 | FALSE |
171 | ROSMAP | Brain Pre-frontal Cortex | CDK2AP2 | 0.03 | 0.02 | enet | 11 | 0.03 | 1.6e-04 | 3.9 | -7.3 | 1.9e-13 | -0.48 | 0.27 | 0.60 | FALSE |
172 | ROSMAP | Brain Pre-frontal Cortex | RAD9A | 0.34 | 0.17 | enet | 21 | 0.20 | 1.1e-25 | 9.8 | 8.1 | 6.2e-16 | 0.89 | 0.00 | 1.00 | FALSE |
173 | ROSMAP | Brain Pre-frontal Cortex | VEGFB | 0.10 | 0.07 | enet | 6 | 0.05 | 1.5e-07 | 6.9 | -7.1 | 1.3e-12 | 0.03 | 0.16 | 0.84 | TRUE |
174 | ROSMAP | Brain Pre-frontal Cortex | C11orf80 | 0.36 | 0.13 | enet | 32 | 0.20 | 1.3e-24 | -4.1 | 5.8 | 9.0e-09 | 0.37 | 1.00 | 0.00 | TRUE |
175 | ROSMAP | Brain Pre-frontal Cortex | CCS | 0.08 | 0.04 | lasso | 9 | 0.06 | 8.9e-08 | -7.9 | 7.7 | 2.1e-14 | 0.20 | 0.13 | 0.87 | FALSE |
176 | ROSMAP | Brain Pre-frontal Cortex | CTSF | 0.07 | 0.08 | blup | 244 | 0.07 | 1.6e-09 | -5.7 | -6.1 | 1.2e-09 | -0.15 | 1.00 | 0.00 | FALSE |
177 | ROSMAP | Brain Pre-frontal Cortex | BANF1 | 0.05 | 0.02 | blup | 325 | 0.03 | 2.4e-04 | 4.4 | -5.6 | 2.6e-08 | -0.20 | 0.66 | 0.01 | FALSE |
178 | ROSMAP | Brain Pre-frontal Cortex | RPS6KB2 | 0.24 | 0.37 | lasso | 5 | 0.37 | 7.2e-50 | 6.9 | -6.8 | 8.3e-12 | -0.15 | 1.00 | 0.00 | FALSE |
179 | ROSMAP | Brain Pre-frontal Cortex | PTPRCAP | 0.31 | 0.47 | enet | 14 | 0.47 | 2.7e-68 | 7.0 | -6.8 | 1.1e-11 | -0.15 | 1.00 | 0.00 | FALSE |
180 | ROSMAP | Brain Pre-frontal Cortex | AP003774.6 | 0.34 | 0.34 | bslmm | 332 | 0.35 | 3.9e-46 | 5.5 | 5.4 | 8.1e-08 | 0.01 | 1.00 | 0.00 | FALSE |
181 | YFS | Blood | BBS1 | 0.02 | 0.02 | lasso | 5 | 0.02 | 1.4e-07 | 8.7 | 8.7 | 2.7e-18 | 0.22 | 0.01 | 0.99 | FALSE |
182 | YFS | Blood | BRMS1 | 0.01 | 0.00 | blup | 303 | 0.00 | 9.0e-03 | 4.8 | 7.9 | 2.8e-15 | 0.23 | 0.16 | 0.62 | FALSE |
183 | YFS | Blood | CCS | 0.17 | 0.27 | lasso | 11 | 0.28 | 6.6e-94 | -7.8 | 8.2 | 2.5e-16 | 0.23 | 0.83 | 0.17 | FALSE |
184 | YFS | Blood | CDC42EP2 | 0.02 | 0.00 | bslmm | 348 | 0.01 | 5.0e-03 | -5.3 | -5.8 | 8.2e-09 | -0.07 | 0.21 | 0.26 | FALSE |
185 | YFS | Blood | CORO1B | 0.10 | 0.11 | bslmm | 223 | 0.11 | 6.3e-34 | 7.0 | -6.5 | 7.0e-11 | -0.11 | 1.00 | 0.00 | FALSE |
186 | YFS | Blood | CTSF | 0.31 | 0.28 | bslmm | 258 | 0.33 | 5.1e-111 | -4.2 | -6.7 | 1.7e-11 | -0.22 | 1.00 | 0.00 | FALSE |
187 | YFS | Blood | DPP3 | 0.10 | 0.10 | bslmm | 286 | 0.12 | 1.1e-35 | -5.5 | 7.0 | 2.7e-12 | 0.16 | 1.00 | 0.00 | FALSE |
188 | YFS | Blood | LRFN4 | 0.06 | 0.05 | lasso | 5 | 0.05 | 7.3e-17 | -7.6 | 8.7 | 2.2e-18 | 0.19 | 1.00 | 0.00 | FALSE |
189 | YFS | Blood | POLA2 | 0.04 | 0.05 | lasso | 15 | 0.05 | 3.9e-17 | -5.3 | 5.5 | 4.0e-08 | 0.03 | 0.39 | 0.61 | FALSE |
190 | YFS | Blood | RAD9A | 0.08 | 0.02 | lasso | 7 | 0.04 | 5.4e-12 | 9.8 | 8.5 | 2.7e-17 | 0.78 | 0.00 | 1.00 | FALSE |
191 | YFS | Blood | RPS6KA4 | 0.31 | 0.28 | enet | 19 | 0.28 | 9.2e-93 | 5.6 | -5.8 | 5.2e-09 | 0.01 | 1.00 | 0.00 | TRUE |
192 | YFS | Blood | RPS6KB2 | 0.04 | 0.05 | lasso | 7 | 0.05 | 6.7e-17 | 6.9 | -6.9 | 4.9e-12 | -0.15 | 1.00 | 0.00 | FALSE |
193 | YFS | Blood | SNX15 | 0.04 | 0.03 | lasso | 4 | 0.03 | 9.6e-10 | 6.0 | -6.0 | 1.6e-09 | -0.05 | 0.01 | 0.99 | FALSE |
194 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CTSF | 0.05 | 0.05 | lasso | 2 | 0.05 | 7.7e-05 | 8.5 | -8.5 | 1.7e-17 | -0.25 | 0.03 | 0.92 | FALSE |
195 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | POLA2 | 0.04 | 0.03 | lasso | 7 | 0.03 | 6.3e-04 | -5.3 | 5.5 | 3.9e-08 | 0.05 | 0.01 | 0.89 | FALSE |
196 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | RPS6KB2 | 0.07 | 0.06 | enet | 13 | 0.08 | 3.8e-07 | 7.0 | -5.9 | 3.3e-09 | -0.08 | 0.01 | 0.99 | FALSE |
197 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ACTN3 | 0.05 | 0.07 | lasso | 2 | 0.07 | 6.0e-14 | 8.3 | -8.5 | 2.2e-17 | -0.27 | 0.04 | 0.96 | FALSE |
198 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RPS6KB2 | 0.05 | 0.06 | lasso | 3 | 0.06 | 1.1e-12 | 6.9 | -6.9 | 5.0e-12 | -0.16 | 0.02 | 0.98 | FALSE |
199 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DPP3 | 0.05 | 0.02 | blup | 41 | 0.02 | 2.8e-02 | -5.5 | 5.9 | 2.9e-09 | 0.15 | 0.05 | 0.23 | FALSE |
200 | The Cancer Genome Atlas | Colon Adenocarcinoma | LTBP3 | 0.07 | 0.04 | lasso | 3 | 0.02 | 2.2e-02 | 5.4 | -5.4 | 5.2e-08 | 0.06 | 0.01 | 0.66 | FALSE |
201 | The Cancer Genome Atlas | Colon Adenocarcinoma | RPS6KB2 | 0.11 | 0.12 | lasso | 6 | 0.10 | 1.2e-06 | 7.0 | -7.0 | 3.7e-12 | -0.16 | 0.01 | 0.99 | FALSE |
202 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ACTN3 | 0.21 | 0.16 | lasso | 4 | 0.16 | 4.5e-18 | 8.5 | -8.5 | 2.2e-17 | -0.26 | 0.05 | 0.95 | FALSE |
203 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | POLA2 | 0.04 | 0.01 | lasso | 3 | 0.02 | 8.7e-04 | -5.3 | 5.5 | 3.0e-08 | 0.02 | 0.02 | 0.96 | FALSE |
204 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZDHHC24 | 0.03 | 0.03 | blup | 47 | 0.03 | 1.5e-04 | -5.7 | -7.7 | 1.5e-14 | -0.20 | 0.32 | 0.53 | FALSE |
205 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ACTN3 | 0.09 | 0.10 | lasso | 3 | 0.10 | 2.7e-11 | 8.5 | -8.6 | 1.0e-17 | -0.25 | 0.03 | 0.97 | FALSE |
206 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | BBS1 | 0.03 | 0.01 | enet | 6 | 0.02 | 1.5e-03 | -5.5 | 8.3 | 7.8e-17 | 0.21 | 0.06 | 0.43 | FALSE |
207 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CTSF | 0.04 | 0.03 | lasso | 3 | 0.03 | 1.1e-04 | -4.2 | -6.5 | 9.9e-11 | -0.21 | 0.02 | 0.79 | FALSE |
208 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DPF2 | 0.07 | 0.04 | blup | 28 | 0.04 | 2.9e-05 | -4.3 | 5.4 | 7.9e-08 | 0.09 | 0.04 | 0.72 | TRUE |
209 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DPP3 | 0.05 | 0.06 | lasso | 4 | 0.07 | 6.2e-08 | -5.5 | 5.9 | 3.4e-09 | 0.15 | 0.99 | 0.01 | FALSE |
210 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | KCNK7 | 0.04 | 0.01 | blup | 42 | 0.01 | 1.2e-02 | 5.4 | -5.8 | 8.4e-09 | -0.03 | 0.01 | 0.98 | TRUE |
211 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | POLA2 | 0.07 | 0.09 | lasso | 2 | 0.09 | 5.6e-10 | -5.2 | 5.4 | 8.3e-08 | 0.05 | 0.02 | 0.98 | TRUE |
212 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RPS6KB2 | 0.09 | 0.16 | enet | 9 | 0.15 | 2.1e-16 | 7.0 | -7.0 | 3.1e-12 | -0.16 | 0.01 | 0.99 | FALSE |
213 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DPP3 | 0.05 | 0.07 | lasso | 5 | 0.06 | 1.4e-04 | -5.7 | 5.7 | 1.0e-08 | 0.13 | 0.23 | 0.06 | FALSE |
214 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PTPRCAP | 0.05 | 0.04 | enet | 3 | 0.03 | 1.2e-02 | 5.9 | -6.2 | 4.5e-10 | -0.20 | 0.02 | 0.64 | FALSE |
215 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RPS6KB2 | 0.10 | 0.12 | blup | 34 | 0.10 | 1.5e-06 | 7.0 | -5.4 | 7.7e-08 | -0.08 | 0.01 | 0.99 | FALSE |
216 | The Cancer Genome Atlas | Brain Lower Grade Glioma | BBS1 | 0.14 | 0.09 | blup | 48 | 0.10 | 3.0e-11 | 8.4 | 7.9 | 2.0e-15 | 0.22 | 0.01 | 0.99 | FALSE |
217 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C11orf80 | 0.05 | 0.04 | lasso | 3 | 0.03 | 4.6e-04 | -5.1 | 5.1 | 2.9e-07 | 0.14 | 0.86 | 0.01 | FALSE |
218 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CCDC88B | 0.03 | 0.04 | lasso | 1 | 0.04 | 3.8e-05 | 5.5 | -5.5 | 4.0e-08 | -0.03 | 0.18 | 0.28 | TRUE |
219 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CTSF | 0.05 | 0.04 | blup | 35 | 0.04 | 1.2e-05 | -5.7 | -6.2 | 4.0e-10 | -0.16 | 0.67 | 0.14 | FALSE |
220 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DPF2 | 0.03 | 0.02 | blup | 28 | 0.02 | 1.2e-03 | -4.3 | 5.2 | 1.7e-07 | 0.06 | 0.01 | 0.90 | FALSE |
221 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LRFN4 | 0.03 | 0.04 | lasso | 4 | 0.03 | 1.5e-04 | -7.6 | 7.6 | 3.7e-14 | 0.16 | 0.02 | 0.87 | FALSE |
222 | The Cancer Genome Atlas | Brain Lower Grade Glioma | POLA2 | 0.10 | 0.02 | enet | 7 | 0.06 | 7.5e-08 | 2.4 | 5.5 | 3.0e-08 | 0.17 | 0.03 | 0.96 | FALSE |
223 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PTPRCAP | 0.12 | 0.22 | blup | 37 | 0.22 | 2.3e-24 | 7.0 | -6.0 | 1.7e-09 | -0.10 | 0.01 | 0.99 | FALSE |
224 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RPS6KB2 | 0.09 | 0.15 | lasso | 6 | 0.15 | 1.1e-16 | 6.9 | -6.4 | 1.7e-10 | -0.13 | 0.01 | 0.99 | FALSE |
225 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TRMT112 | 0.10 | 0.02 | blup | 28 | 0.05 | 4.7e-06 | 3.9 | -6.0 | 1.6e-09 | 0.06 | 0.02 | 0.96 | FALSE |
226 | The Cancer Genome Atlas | Lung Adenocarcinoma | ACTN3 | 0.07 | 0.08 | blup | 39 | 0.07 | 4.5e-09 | 8.3 | -8.8 | 8.6e-19 | -0.27 | 0.03 | 0.97 | FALSE |
227 | The Cancer Genome Atlas | Lung Adenocarcinoma | BBS1 | 0.03 | 0.01 | enet | 8 | 0.02 | 9.9e-04 | 8.7 | 8.0 | 1.6e-15 | 0.24 | 0.02 | 0.93 | FALSE |
228 | The Cancer Genome Atlas | Lung Adenocarcinoma | KCNK7 | 0.03 | 0.00 | enet | 7 | 0.03 | 3.9e-04 | -5.0 | -5.2 | 2.5e-07 | -0.10 | 0.01 | 0.77 | TRUE |
229 | The Cancer Genome Atlas | Lung Adenocarcinoma | RPS6KB2 | 0.05 | 0.07 | lasso | 4 | 0.06 | 6.2e-08 | 6.9 | -7.0 | 3.4e-12 | -0.17 | 0.01 | 0.99 | FALSE |
230 | The Cancer Genome Atlas | Lung Adenocarcinoma | ZDHHC24 | 0.03 | 0.04 | lasso | 1 | 0.04 | 6.4e-06 | -5.7 | -5.7 | 1.2e-08 | -0.13 | 0.86 | 0.02 | FALSE |
231 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ACTN3 | 0.05 | 0.06 | blup | 39 | 0.05 | 3.0e-06 | 8.5 | -8.7 | 3.1e-18 | -0.25 | 0.02 | 0.98 | FALSE |
232 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | BBS1 | 0.02 | 0.02 | blup | 48 | 0.02 | 1.3e-03 | 8.3 | 9.1 | 1.1e-19 | 0.24 | 0.02 | 0.85 | FALSE |
233 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C11orf80 | 0.03 | 0.01 | blup | 30 | 0.01 | 4.8e-02 | -5.2 | 5.2 | 2.2e-07 | 0.12 | 0.04 | 0.03 | FALSE |
234 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CTSF | 0.03 | 0.03 | blup | 36 | 0.04 | 2.9e-05 | 8.7 | -8.9 | 4.5e-19 | -0.27 | 0.01 | 0.98 | FALSE |
235 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | POLA2 | 0.04 | 0.05 | lasso | 4 | 0.04 | 3.2e-05 | -5.4 | 5.4 | 5.4e-08 | 0.02 | 0.01 | 0.99 | FALSE |
236 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RPS6KB2 | 0.05 | 0.05 | lasso | 6 | 0.04 | 1.2e-05 | 7.0 | -7.0 | 1.8e-12 | -0.17 | 0.01 | 0.99 | FALSE |
237 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ACTN3 | 0.23 | 0.06 | enet | 13 | 0.08 | 3.9e-06 | 8.3 | -6.5 | 7.8e-11 | -0.25 | 0.02 | 0.98 | FALSE |
238 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ACTN3 | 0.18 | 0.14 | lasso | 4 | 0.14 | 1.8e-06 | 8.6 | -8.6 | 1.0e-17 | -0.25 | 0.02 | 0.98 | FALSE |
239 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SPTBN2 | 0.11 | 0.12 | lasso | 1 | 0.10 | 6.3e-05 | 8.7 | -8.7 | 3.9e-18 | -0.22 | 0.00 | 0.99 | FALSE |
240 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | BBS1 | 0.14 | 0.15 | lasso | 6 | 0.17 | 2.7e-07 | -5.4 | 5.4 | 5.8e-08 | 0.13 | 0.87 | 0.07 | FALSE |
241 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ACTN3 | 0.14 | 0.14 | enet | 9 | 0.13 | 7.0e-14 | 8.3 | -8.2 | 1.8e-16 | -0.27 | 0.05 | 0.95 | FALSE |
242 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CTSF | 0.03 | 0.03 | lasso | 2 | 0.04 | 9.2e-05 | -4.2 | -6.6 | 3.4e-11 | -0.21 | 0.02 | 0.70 | FALSE |
243 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DPP3 | 0.48 | 0.14 | lasso | 8 | 0.15 | 1.6e-15 | -5.5 | 6.5 | 7.7e-11 | 0.16 | 1.00 | 0.00 | FALSE |
244 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LRFN4 | 0.02 | 0.02 | blup | 25 | 0.01 | 3.6e-02 | -7.6 | 7.2 | 4.4e-13 | 0.18 | 0.01 | 0.78 | TRUE |
245 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PTPRCAP | 0.08 | 0.10 | lasso | 2 | 0.10 | 7.8e-11 | 7.0 | -7.0 | 2.6e-12 | -0.16 | 0.01 | 0.99 | FALSE |
246 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RBM4 | 0.03 | 0.01 | enet | 3 | 0.02 | 1.3e-03 | -4.4 | 6.5 | 1.2e-10 | 0.16 | 0.01 | 0.46 | FALSE |
247 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RPS6KB2 | 0.09 | 0.13 | lasso | 6 | 0.13 | 7.1e-14 | 6.9 | -6.6 | 5.5e-11 | -0.14 | 0.01 | 0.99 | FALSE |
248 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ACTN3 | 0.08 | 0.06 | blup | 38 | 0.07 | 9.2e-05 | 8.5 | -9.4 | 3.5e-21 | -0.26 | 0.01 | 0.97 | FALSE |
249 | The Cancer Genome Atlas | Soft Tissue Sarcoma | RPS6KB2 | 0.05 | 0.04 | lasso | 2 | 0.04 | 2.1e-03 | 6.9 | -6.9 | 4.5e-12 | -0.15 | 0.01 | 0.96 | FALSE |
250 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CTSF | 0.20 | 0.08 | enet | 6 | 0.09 | 8.7e-07 | -4.2 | -6.8 | 1.0e-11 | -0.21 | 0.28 | 0.47 | TRUE |
251 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LRFN4 | 0.04 | 0.02 | blup | 24 | 0.03 | 2.2e-03 | -7.6 | 7.5 | 4.7e-14 | 0.20 | 0.01 | 0.81 | FALSE |
252 | The Cancer Genome Atlas | Stomach Adenocarcinoma | POLA2 | 0.05 | 0.03 | blup | 34 | 0.04 | 1.4e-03 | -5.3 | 5.8 | 5.0e-09 | 0.08 | 0.01 | 0.91 | FALSE |
253 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RPS6KB2 | 0.10 | 0.11 | lasso | 4 | 0.10 | 8.6e-08 | 7.0 | -7.0 | 2.9e-12 | -0.16 | 0.01 | 0.99 | FALSE |
254 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | ACTN3 | 0.18 | 0.08 | enet | 4 | 0.08 | 9.1e-04 | 8.5 | -8.6 | 7.4e-18 | -0.27 | 0.03 | 0.86 | FALSE |
255 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | NPAS4 | 0.14 | 0.14 | blup | 21 | 0.11 | 1.4e-04 | -4.4 | 5.2 | 2.1e-07 | 0.13 | 0.16 | 0.13 | FALSE |
256 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RPS6KB2 | 0.12 | 0.06 | blup | 35 | 0.05 | 5.4e-03 | 6.9 | -6.6 | 4.0e-11 | -0.16 | 0.01 | 0.80 | FALSE |
257 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | TBC1D10C | 0.12 | 0.05 | lasso | 5 | 0.03 | 3.0e-02 | 7.0 | -7.0 | 3.5e-12 | -0.16 | 0.01 | 0.84 | FALSE |
258 | The Cancer Genome Atlas | Thyroid Carcinoma | ACTN3 | 0.04 | 0.06 | lasso | 4 | 0.05 | 2.0e-05 | 8.3 | -8.4 | 4.1e-17 | -0.26 | 0.02 | 0.97 | FALSE |
259 | The Cancer Genome Atlas | Thyroid Carcinoma | CTSF | 0.09 | 0.09 | lasso | 9 | 0.09 | 9.8e-09 | 8.6 | -8.6 | 5.6e-18 | -0.28 | 0.02 | 0.98 | FALSE |
260 | The Cancer Genome Atlas | Thyroid Carcinoma | DPP3 | 0.07 | 0.09 | blup | 40 | 0.10 | 2.4e-10 | -5.6 | 6.2 | 6.7e-10 | 0.15 | 1.00 | 0.00 | FALSE |
261 | The Cancer Genome Atlas | Thyroid Carcinoma | LRFN4 | 0.03 | 0.04 | lasso | 2 | 0.04 | 2.2e-04 | -7.6 | 7.6 | 3.1e-14 | 0.16 | 0.02 | 0.84 | TRUE |
262 | The Cancer Genome Atlas | Thyroid Carcinoma | NAALADL1 | 0.05 | 0.00 | blup | 44 | 0.02 | 1.8e-03 | -2.2 | 5.4 | 5.9e-08 | 0.01 | 0.02 | 0.57 | FALSE |
263 | The Cancer Genome Atlas | Thyroid Carcinoma | POLA2 | 0.07 | 0.06 | blup | 35 | 0.07 | 4.0e-07 | -5.2 | 5.5 | 3.7e-08 | 0.09 | 0.01 | 0.99 | TRUE |
264 | The Cancer Genome Atlas | Thyroid Carcinoma | PTPRCAP | 0.04 | 0.02 | blup | 36 | 0.02 | 3.9e-03 | 3.0 | -5.3 | 1.2e-07 | -0.07 | 0.01 | 0.88 | FALSE |
265 | The Cancer Genome Atlas | Thyroid Carcinoma | RPS6KB2 | 0.12 | 0.15 | lasso | 6 | 0.15 | 2.1e-14 | 6.9 | -6.7 | 2.6e-11 | -0.12 | 0.01 | 0.99 | FALSE |
266 | The Cancer Genome Atlas | Thyroid Carcinoma | SNX15 | 0.05 | 0.05 | blup | 52 | 0.05 | 1.6e-05 | 6.1 | -6.5 | 1.1e-10 | -0.06 | 0.01 | 0.98 | TRUE |
267 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | CCS | 0.20 | 0.02 | enet | 6 | 0.09 | 2.2e-03 | -5.6 | 7.0 | 3.7e-12 | 0.23 | 0.01 | 0.29 | FALSE |
268 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | POLA2 | 0.12 | 0.17 | lasso | 11 | 0.17 | 1.4e-05 | -5.3 | 5.3 | 1.3e-07 | 0.03 | 0.01 | 0.97 | TRUE |
269 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | ZDHHC24 | 0.42 | 0.02 | blup | 49 | 0.09 | 1.5e-03 | -5.7 | -8.4 | 5.4e-17 | -0.21 | 0.05 | 0.75 | FALSE |