Best TWAS P=1.07e-48 · Best GWAS P=5.7e-50 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | TMEM43 | 0.10 | 0.01 | blup | 568 | 0.03 | 8.4e-05 | -7.08 | 11.4 | 2.8e-30 | -0.01 | 0.39 | 0.33 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | WNT7A | 0.07 | 0.01 | bslmm | 539 | 0.03 | 1.3e-04 | -6.53 | -6.7 | 2.4e-11 | -0.17 | 0.34 | 0.02 | TRUE |
3 | GTEx | Adipose Subcutaneous | MKRN2 | 0.13 | 0.04 | enet | 10 | 0.07 | 3.2e-06 | -2.17 | -5.6 | 2.3e-08 | -0.12 | 0.30 | 0.66 | FALSE |
4 | GTEx | Adipose Subcutaneous | RAF1 | 0.08 | 0.02 | lasso | 6 | 0.04 | 5.2e-04 | -6.60 | 6.3 | 2.7e-10 | -0.02 | 0.76 | 0.03 | FALSE |
5 | GTEx | Adipose Subcutaneous | THUMPD3 | 0.19 | 0.06 | lasso | 6 | 0.06 | 1.6e-05 | -6.41 | -6.6 | 4.0e-11 | -0.06 | 0.04 | 0.95 | FALSE |
6 | GTEx | Adipose Subcutaneous | CRELD1 | 0.46 | 0.16 | enet | 51 | 0.27 | 2.2e-22 | -12.12 | -14.7 | 1.1e-48 | -0.03 | 0.00 | 1.00 | TRUE |
7 | GTEx | Adipose Visceral Omentum | MKRN2 | 0.20 | 0.05 | enet | 11 | 0.09 | 1.7e-05 | -8.69 | -7.5 | 6.3e-14 | -0.11 | 0.04 | 0.96 | FALSE |
8 | GTEx | Adipose Visceral Omentum | THUMPD3 | 0.30 | 0.17 | lasso | 7 | 0.13 | 2.0e-07 | -6.41 | -6.6 | 4.5e-11 | -0.04 | 0.04 | 0.96 | FALSE |
9 | GTEx | Adipose Visceral Omentum | CRELD1 | 0.19 | 0.12 | lasso | 4 | 0.10 | 4.1e-06 | -12.12 | -13.0 | 2.3e-38 | -0.06 | 0.00 | 1.00 | FALSE |
10 | GTEx | Artery Aorta | RAD18 | 0.24 | 0.04 | lasso | 5 | 0.05 | 1.6e-03 | 6.76 | -7.9 | 2.0e-15 | 0.05 | 0.01 | 0.98 | TRUE |
11 | GTEx | Artery Aorta | THUMPD3 | 0.19 | 0.16 | lasso | 5 | 0.16 | 3.1e-09 | -6.41 | -6.0 | 1.9e-09 | -0.05 | 0.04 | 0.96 | FALSE |
12 | GTEx | Artery Aorta | TSEN2 | 0.11 | 0.01 | enet | 22 | 0.02 | 1.7e-02 | 1.06 | 5.2 | 1.9e-07 | 0.04 | 0.21 | 0.50 | FALSE |
13 | GTEx | Artery Aorta | IL17RC | 0.16 | 0.11 | lasso | 3 | 0.06 | 1.9e-04 | -6.16 | 6.2 | 4.8e-10 | 0.13 | 0.96 | 0.00 | FALSE |
14 | GTEx | Artery Aorta | CRELD1 | 0.30 | 0.07 | lasso | 7 | 0.12 | 2.4e-07 | -12.12 | -12.6 | 2.0e-36 | -0.08 | 0.00 | 1.00 | FALSE |
15 | GTEx | Artery Aorta | AC034193.5 | 0.12 | 0.01 | lasso | 3 | 0.00 | 1.6e-01 | 5.76 | 5.7 | 1.2e-08 | 0.00 | 0.26 | 0.04 | FALSE |
16 | GTEx | Artery Aorta | RP11-1020A11.1 | 0.15 | 0.01 | lasso | 3 | 0.00 | 4.0e-01 | -12.12 | -13.1 | 2.9e-39 | -0.06 | 0.01 | 0.83 | FALSE |
17 | GTEx | Artery Tibial | RAD18 | 0.13 | 0.11 | lasso | 3 | 0.09 | 8.7e-08 | -6.39 | -6.5 | 6.4e-11 | 0.02 | 0.04 | 0.96 | FALSE |
18 | GTEx | Artery Tibial | MKRN2 | 0.27 | 0.09 | enet | 20 | 0.25 | 3.1e-19 | -2.17 | -7.2 | 4.8e-13 | -0.14 | 0.04 | 0.96 | FALSE |
19 | GTEx | Artery Tibial | THUMPD3 | 0.21 | 0.11 | lasso | 5 | 0.13 | 4.2e-10 | -6.41 | -6.4 | 1.4e-10 | -0.05 | 0.05 | 0.95 | FALSE |
20 | GTEx | Artery Tibial | TSEN2 | 0.14 | 0.10 | lasso | 6 | 0.07 | 5.3e-06 | -8.33 | 8.3 | 1.2e-16 | 0.08 | 0.16 | 0.84 | FALSE |
21 | GTEx | Artery Tibial | CRELD1 | 0.43 | 0.15 | enet | 41 | 0.21 | 1.1e-16 | -12.12 | -13.4 | 7.8e-41 | -0.08 | 0.00 | 1.00 | FALSE |
22 | GTEx | Artery Tibial | AC034193.5 | 0.10 | 0.08 | lasso | 1 | 0.06 | 1.2e-05 | 5.75 | 5.8 | 9.2e-09 | 0.00 | 0.96 | 0.00 | FALSE |
23 | GTEx | Brain Caudate basal ganglia | MKRN2 | 0.38 | 0.01 | lasso | 9 | 0.04 | 3.3e-02 | 9.12 | -5.9 | 3.1e-09 | -0.10 | 0.10 | 0.20 | FALSE |
24 | GTEx | Brain Cerebellar Hemisphere | IL17RC | 0.37 | 0.28 | lasso | 1 | 0.27 | 1.4e-07 | -6.24 | -6.2 | 4.3e-10 | -0.13 | 0.93 | 0.01 | FALSE |
25 | GTEx | Brain Cerebellum | IL17RC | 0.55 | 0.46 | lasso | 6 | 0.50 | 9.0e-17 | -6.24 | -7.2 | 7.6e-13 | -0.12 | 1.00 | 0.00 | FALSE |
26 | GTEx | Brain Cerebellum | FGD5-AS1 | 0.25 | 0.17 | lasso | 4 | 0.12 | 2.5e-04 | 5.75 | -5.3 | 1.0e-07 | 0.04 | 0.19 | 0.08 | FALSE |
27 | GTEx | Brain Cerebellum | RP11-434D12.1 | 0.34 | 0.04 | lasso | 6 | 0.00 | 3.2e-01 | -6.61 | -5.8 | 5.8e-09 | -0.04 | 0.09 | 0.06 | FALSE |
28 | GTEx | Breast Mammary Tissue | CRELD1 | 0.25 | 0.19 | lasso | 6 | 0.18 | 2.2e-09 | -12.12 | -12.1 | 1.5e-33 | -0.05 | 0.00 | 1.00 | FALSE |
29 | GTEx | Breast Mammary Tissue | GHRLOS | 0.29 | 0.16 | enet | 25 | 0.24 | 1.0e-12 | 4.72 | -5.5 | 3.8e-08 | -0.03 | 1.00 | 0.00 | FALSE |
30 | GTEx | Cells EBV-transformed lymphocytes | MKRN2 | 0.32 | 0.26 | lasso | 4 | 0.21 | 1.5e-07 | -7.94 | 8.1 | 7.7e-16 | 0.05 | 0.88 | 0.07 | FALSE |
31 | GTEx | Cells EBV-transformed lymphocytes | CYCSP10 | 0.19 | 0.01 | lasso | 5 | -0.01 | 6.6e-01 | 5.75 | -5.6 | 1.8e-08 | 0.00 | 0.08 | 0.08 | FALSE |
32 | GTEx | Cells Transformed fibroblasts | RAD18 | 0.24 | 0.12 | lasso | 3 | 0.10 | 2.7e-08 | 6.71 | -6.8 | 1.1e-11 | 0.02 | 0.00 | 1.00 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | THUMPD3 | 0.15 | 0.08 | enet | 17 | 0.08 | 1.9e-06 | -6.41 | -5.9 | 4.4e-09 | -0.04 | 0.04 | 0.94 | FALSE |
34 | GTEx | Cells Transformed fibroblasts | CHCHD4 | 0.17 | 0.06 | enet | 26 | 0.05 | 9.8e-05 | -7.20 | 5.2 | 1.6e-07 | 0.02 | 0.80 | 0.04 | FALSE |
35 | GTEx | Cells Transformed fibroblasts | IL17RC | 0.14 | 0.10 | lasso | 2 | 0.08 | 7.2e-07 | -6.07 | 6.3 | 3.9e-10 | 0.12 | 0.99 | 0.00 | FALSE |
36 | GTEx | Cells Transformed fibroblasts | CRELD1 | 0.39 | 0.19 | enet | 39 | 0.28 | 4.5e-21 | -12.12 | -14.2 | 5.5e-46 | -0.05 | 0.00 | 1.00 | FALSE |
37 | GTEx | Cells Transformed fibroblasts | JAGN1 | 0.13 | 0.08 | lasso | 3 | 0.08 | 1.6e-06 | -6.32 | -6.0 | 1.5e-09 | -0.11 | 0.96 | 0.00 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | AC034193.5 | 0.12 | 0.05 | lasso | 3 | 0.05 | 1.2e-04 | 5.65 | 5.2 | 2.3e-07 | 0.00 | 0.94 | 0.00 | FALSE |
39 | GTEx | Cells Transformed fibroblasts | RP11-1020A11.1 | 0.20 | 0.10 | enet | 67 | 0.09 | 1.9e-07 | -12.12 | -13.9 | 6.2e-44 | -0.05 | 0.00 | 1.00 | FALSE |
40 | GTEx | Colon Sigmoid | JAGN1 | 0.19 | 0.02 | lasso | 5 | 0.07 | 1.9e-03 | -6.22 | -5.8 | 8.9e-09 | -0.18 | 0.16 | 0.21 | FALSE |
41 | GTEx | Esophagus Gastroesophageal Junction | MKRN2 | 0.17 | 0.10 | enet | 13 | 0.07 | 1.9e-03 | -10.05 | -10.2 | 2.8e-24 | -0.08 | 0.01 | 0.98 | TRUE |
42 | GTEx | Esophagus Mucosa | VHL | 0.14 | 0.00 | lasso | 1 | 0.00 | 2.9e-01 | 5.75 | -5.8 | 8.7e-09 | 0.00 | 0.06 | 0.48 | FALSE |
43 | GTEx | Esophagus Mucosa | IL17RC | 0.11 | 0.08 | lasso | 2 | 0.03 | 7.9e-03 | -6.32 | 6.3 | 2.5e-10 | 0.14 | 0.87 | 0.00 | FALSE |
44 | GTEx | Esophagus Mucosa | CRELD1 | 0.14 | 0.06 | enet | 7 | 0.11 | 7.7e-08 | -12.12 | -11.4 | 5.9e-30 | -0.10 | 0.00 | 0.99 | FALSE |
45 | GTEx | Esophagus Mucosa | FGD5-AS1 | 0.23 | 0.00 | lasso | 13 | 0.10 | 2.0e-07 | 3.06 | 5.6 | 1.7e-08 | 0.07 | 0.09 | 0.73 | TRUE |
46 | GTEx | Esophagus Muscularis | MKRN2 | 0.15 | 0.05 | lasso | 8 | 0.12 | 8.9e-08 | 8.32 | -7.1 | 1.7e-12 | -0.12 | 0.37 | 0.62 | FALSE |
47 | GTEx | Esophagus Muscularis | TSEN2 | 0.12 | 0.03 | enet | 36 | 0.05 | 5.6e-04 | -8.96 | 6.0 | 2.0e-09 | 0.07 | 0.05 | 0.55 | FALSE |
48 | GTEx | Esophagus Muscularis | CHCHD4 | 0.10 | 0.08 | lasso | 3 | 0.07 | 4.1e-05 | 4.47 | 5.4 | 5.8e-08 | 0.10 | 0.76 | 0.01 | FALSE |
49 | GTEx | Esophagus Muscularis | CRELD1 | 0.21 | 0.10 | lasso | 1 | 0.08 | 1.7e-05 | -12.12 | -12.1 | 8.3e-34 | -0.05 | 0.00 | 1.00 | FALSE |
50 | GTEx | Esophagus Muscularis | TMEM43 | 0.09 | 0.03 | enet | 9 | 0.04 | 1.5e-03 | 2.35 | 5.5 | 4.3e-08 | 0.01 | 0.11 | 0.67 | FALSE |
51 | GTEx | Esophagus Muscularis | LINC00852 | 0.18 | 0.04 | lasso | 6 | 0.09 | 5.0e-06 | -4.32 | -5.8 | 6.1e-09 | 0.03 | 0.38 | 0.50 | FALSE |
52 | GTEx | Heart Atrial Appendage | MKRN2 | 0.14 | 0.09 | lasso | 3 | 0.08 | 1.5e-04 | -9.25 | -9.9 | 3.2e-23 | -0.06 | 0.01 | 0.99 | FALSE |
53 | GTEx | Heart Atrial Appendage | IL17RC | 0.19 | 0.19 | lasso | 2 | 0.19 | 7.8e-09 | -6.13 | 5.9 | 2.9e-09 | 0.13 | 0.99 | 0.00 | FALSE |
54 | GTEx | Heart Left Ventricle | MKRN2 | 0.21 | 0.05 | enet | 15 | 0.14 | 1.1e-07 | -8.69 | -8.7 | 4.6e-18 | -0.11 | 0.02 | 0.98 | FALSE |
55 | GTEx | Heart Left Ventricle | IL17RE | 0.16 | -0.01 | enet | 44 | 0.02 | 2.6e-02 | -1.37 | -5.3 | 1.1e-07 | -0.04 | 0.09 | 0.05 | FALSE |
56 | GTEx | Lung | THUMPD3 | 0.19 | 0.11 | enet | 29 | 0.11 | 1.7e-08 | -6.41 | -6.3 | 3.0e-10 | -0.07 | 0.04 | 0.96 | FALSE |
57 | GTEx | Lung | IL17RC | 0.28 | 0.27 | enet | 17 | 0.29 | 3.9e-22 | -6.24 | 5.3 | 1.2e-07 | 0.14 | 1.00 | 0.00 | FALSE |
58 | GTEx | Lung | PRRT3-AS1 | 0.08 | 0.00 | lasso | 7 | 0.01 | 8.0e-02 | -1.92 | -5.6 | 2.4e-08 | 0.06 | 0.06 | 0.64 | TRUE |
59 | GTEx | Muscle Skeletal | CAND2 | 0.34 | 0.29 | lasso | 5 | 0.31 | 1.0e-30 | 6.64 | -6.9 | 3.9e-12 | -0.01 | 1.00 | 0.00 | FALSE |
60 | GTEx | Muscle Skeletal | IL17RC | 0.15 | 0.14 | lasso | 5 | 0.14 | 9.6e-14 | -6.24 | 6.0 | 2.3e-09 | 0.13 | 1.00 | 0.00 | FALSE |
61 | GTEx | Muscle Skeletal | LSM3 | 0.09 | 0.02 | enet | 9 | 0.02 | 7.8e-03 | 6.16 | -6.4 | 1.9e-10 | -0.13 | 0.29 | 0.08 | FALSE |
62 | GTEx | Muscle Skeletal | AC022007.5 | 0.08 | 0.00 | lasso | 3 | 0.01 | 3.0e-02 | -4.57 | -5.8 | 8.3e-09 | 0.05 | 0.08 | 0.08 | FALSE |
63 | GTEx | Muscle Skeletal | RP11-767C1.2 | 0.10 | 0.06 | lasso | 5 | 0.08 | 2.6e-08 | 6.63 | -6.2 | 4.1e-10 | -0.01 | 0.68 | 0.03 | FALSE |
64 | GTEx | Nerve Tibial | MKRN2 | 0.12 | 0.00 | enet | 41 | 0.00 | 3.0e-01 | 8.33 | -6.0 | 2.1e-09 | -0.04 | 0.03 | 0.85 | FALSE |
65 | GTEx | Nerve Tibial | CAND2 | 0.12 | 0.01 | enet | 8 | 0.03 | 4.9e-03 | 6.51 | 6.9 | 4.4e-12 | -0.01 | 0.30 | 0.06 | FALSE |
66 | GTEx | Nerve Tibial | CRELD1 | 0.17 | 0.05 | enet | 9 | 0.13 | 2.0e-09 | -12.12 | -11.9 | 9.9e-33 | -0.08 | 0.00 | 1.00 | FALSE |
67 | GTEx | Nerve Tibial | FGD5-AS1 | 0.09 | 0.05 | lasso | 4 | 0.04 | 1.0e-03 | 5.75 | -5.6 | 1.7e-08 | 0.00 | 0.59 | 0.15 | FALSE |
68 | GTEx | Nerve Tibial | AC093495.4 | 0.10 | 0.08 | lasso | 3 | 0.06 | 2.4e-05 | -7.08 | -6.9 | 5.8e-12 | -0.05 | 0.40 | 0.04 | FALSE |
69 | GTEx | Pancreas | IL17RC | 0.28 | 0.20 | lasso | 4 | 0.18 | 2.8e-08 | -6.24 | 6.1 | 1.2e-09 | 0.13 | 0.95 | 0.00 | FALSE |
70 | GTEx | Pituitary | CAND2 | 0.33 | 0.00 | lasso | 11 | 0.02 | 1.3e-01 | -2.19 | -5.3 | 9.1e-08 | -0.03 | 0.06 | 0.06 | FALSE |
71 | GTEx | Skin Not Sun Exposed Suprapubic | CRELD1 | 0.29 | 0.07 | enet | 25 | 0.13 | 9.7e-08 | -3.01 | -10.7 | 1.6e-26 | -0.05 | 0.02 | 0.96 | FALSE |
72 | GTEx | Skin Not Sun Exposed Suprapubic | AC034193.5 | 0.15 | 0.09 | enet | 11 | 0.08 | 3.3e-05 | 5.75 | 5.4 | 6.1e-08 | 0.00 | 0.73 | 0.07 | FALSE |
73 | GTEx | Skin Sun Exposed Lower leg | CRELD1 | 0.29 | 0.15 | enet | 36 | 0.23 | 8.2e-19 | -12.12 | -13.9 | 6.0e-44 | -0.09 | 0.00 | 1.00 | FALSE |
74 | GTEx | Skin Sun Exposed Lower leg | AC034193.5 | 0.09 | 0.11 | lasso | 2 | 0.09 | 8.7e-08 | 5.75 | 5.7 | 1.2e-08 | 0.00 | 1.00 | 0.00 | FALSE |
75 | GTEx | Spleen | IL17RC | 0.45 | 0.22 | lasso | 8 | 0.22 | 2.3e-06 | -6.02 | 5.9 | 3.0e-09 | 0.13 | 0.79 | 0.01 | FALSE |
76 | GTEx | Stomach | IL17RC | 0.11 | 0.05 | lasso | 3 | 0.03 | 1.5e-02 | -6.24 | 6.2 | 5.2e-10 | 0.13 | 0.53 | 0.02 | FALSE |
77 | GTEx | Testis | IL17RC | 0.20 | 0.10 | lasso | 2 | 0.08 | 2.8e-04 | -6.16 | 6.5 | 7.4e-11 | 0.11 | 0.71 | 0.01 | FALSE |
78 | GTEx | Testis | CRELD1 | 0.22 | 0.22 | lasso | 8 | 0.26 | 1.1e-11 | 5.75 | -10.1 | 8.0e-24 | -0.02 | 0.12 | 0.88 | FALSE |
79 | GTEx | Thyroid | MKRN2 | 0.11 | 0.04 | enet | 14 | 0.05 | 6.3e-05 | -9.35 | -7.8 | 6.6e-15 | -0.11 | 0.03 | 0.97 | FALSE |
80 | GTEx | Thyroid | FANCD2 | 0.11 | 0.01 | enet | 51 | 0.01 | 6.4e-02 | 7.15 | -5.6 | 2.3e-08 | -0.05 | 0.43 | 0.02 | FALSE |
81 | GTEx | Thyroid | CAND2 | 0.23 | 0.07 | lasso | 4 | 0.09 | 1.2e-07 | 6.49 | 6.6 | 4.6e-11 | 0.00 | 1.00 | 0.00 | FALSE |
82 | GTEx | Thyroid | JAGN1 | 0.09 | 0.06 | lasso | 2 | 0.04 | 6.2e-04 | -6.22 | -6.2 | 5.3e-10 | -0.13 | 0.93 | 0.00 | FALSE |
83 | GTEx | Thyroid | CIDECP | 0.11 | 0.12 | lasso | 2 | 0.11 | 1.1e-08 | 5.19 | 5.3 | 1.2e-07 | -0.01 | 1.00 | 0.00 | FALSE |
84 | GTEx | Thyroid | BRK1 | 0.08 | 0.05 | lasso | 3 | 0.04 | 6.8e-04 | 5.75 | -5.7 | 1.3e-08 | 0.01 | 0.96 | 0.00 | FALSE |
85 | GTEx | Whole Blood | JAGN1 | 0.06 | 0.05 | lasso | 3 | 0.03 | 7.6e-04 | -5.15 | -5.8 | 6.3e-09 | -0.09 | 0.82 | 0.01 | FALSE |
86 | METSIM | Adipose | BRK1 | 0.04 | 0.02 | bslmm | 559 | 0.01 | 8.9e-03 | 4.61 | -6.0 | 1.7e-09 | -0.04 | 0.31 | 0.35 | FALSE |
87 | METSIM | Adipose | CRELD1 | 0.23 | 0.16 | bslmm | 480 | 0.21 | 3.1e-30 | -12.12 | -12.6 | 3.3e-36 | -0.04 | 0.00 | 1.00 | FALSE |
88 | METSIM | Adipose | RAD18 | 0.07 | 0.00 | blup | 809 | 0.01 | 2.9e-03 | -5.23 | -5.9 | 3.0e-09 | 0.02 | 0.05 | 0.90 | FALSE |
89 | METSIM | Adipose | THUMPD3 | 0.17 | 0.06 | bslmm | 558 | 0.10 | 9.9e-15 | 2.25 | -5.5 | 4.8e-08 | -0.01 | 0.61 | 0.39 | FALSE |
90 | METSIM | Adipose | TMEM43 | 0.06 | 0.01 | blup | 561 | 0.02 | 1.4e-03 | -9.07 | 6.2 | 4.1e-10 | 0.07 | 0.00 | 0.99 | FALSE |
91 | METSIM | Adipose | TSEN2 | 0.06 | 0.02 | enet | 30 | 0.06 | 9.3e-10 | -4.63 | 5.6 | 2.7e-08 | 0.11 | 0.71 | 0.27 | FALSE |
92 | METSIM | Adipose | TTLL3 | 0.12 | 0.01 | bslmm | 452 | 0.03 | 7.9e-05 | -2.72 | -5.5 | 3.9e-08 | -0.10 | 0.12 | 0.03 | TRUE |
93 | NTR | Blood | JAGN1 | 0.03 | 0.02 | lasso | 2 | 0.02 | 1.5e-06 | -6.04 | -6.1 | 1.1e-09 | -0.12 | 1.00 | 0.00 | FALSE |
94 | NTR | Blood | TSEN2 | 0.02 | 0.00 | bslmm | 481 | 0.01 | 1.4e-03 | -2.17 | 7.3 | 2.3e-13 | 0.09 | 0.04 | 0.88 | FALSE |
95 | ROSMAP | Brain Pre-frontal Cortex | THUMPD3 | 0.13 | 0.12 | lasso | 4 | 0.12 | 9.0e-15 | -6.41 | -6.5 | 7.5e-11 | -0.06 | 0.04 | 0.96 | FALSE |
96 | ROSMAP | Brain Pre-frontal Cortex | TSEN2 | 0.15 | 0.11 | lasso | 8 | 0.13 | 1.1e-16 | -8.21 | 7.8 | 5.7e-15 | 0.08 | 1.00 | 0.00 | FALSE |
97 | ROSMAP | Brain Pre-frontal Cortex | WNT7A | 0.12 | 0.04 | enet | 8 | 0.05 | 6.6e-07 | -6.50 | -7.0 | 3.0e-12 | -0.13 | 0.99 | 0.00 | FALSE |
98 | ROSMAP | Brain Pre-frontal Cortex | XPC | 0.10 | 0.04 | lasso | 4 | 0.05 | 2.8e-07 | 6.15 | -8.7 | 2.5e-18 | -0.13 | 0.96 | 0.03 | FALSE |
99 | ROSMAP | Brain Pre-frontal Cortex | SEC13 | 0.06 | 0.01 | bslmm | 606 | 0.02 | 1.0e-03 | 4.05 | 7.8 | 8.0e-15 | 0.01 | 0.60 | 0.03 | FALSE |
100 | ROSMAP | Brain Pre-frontal Cortex | IL17RE | 0.05 | 0.04 | bslmm | 466 | 0.02 | 3.5e-04 | -6.01 | 7.0 | 2.5e-12 | 0.10 | 0.89 | 0.00 | FALSE |
101 | ROSMAP | Brain Pre-frontal Cortex | JAGN1 | 0.40 | 0.45 | bslmm | 441 | 0.48 | 4.9e-70 | -6.07 | -6.5 | 7.2e-11 | -0.13 | 1.00 | 0.00 | FALSE |
102 | ROSMAP | Brain Pre-frontal Cortex | AC022007.5 | 0.05 | 0.02 | blup | 515 | 0.03 | 2.8e-04 | 7.74 | 5.9 | 2.9e-09 | -0.01 | 0.96 | 0.00 | FALSE |
103 | YFS | Blood | FANCD2 | 0.04 | 0.04 | lasso | 1 | 0.04 | 7.7e-13 | 7.15 | -7.2 | 9.0e-13 | -0.06 | 1.00 | 0.00 | FALSE |
104 | YFS | Blood | PRRT3 | 0.08 | 0.02 | bslmm | 469 | 0.04 | 7.4e-13 | -12.12 | -8.9 | 6.4e-19 | -0.07 | 0.00 | 1.00 | FALSE |
105 | YFS | Blood | RAF1 | 0.02 | 0.03 | lasso | 2 | 0.03 | 2.1e-10 | -9.49 | -9.6 | 6.4e-22 | -0.06 | 0.01 | 0.99 | FALSE |
106 | YFS | Blood | THUMPD3 | 0.14 | 0.15 | lasso | 3 | 0.15 | 2.3e-47 | -6.38 | -6.4 | 1.6e-10 | -0.06 | 0.04 | 0.96 | FALSE |
107 | YFS | Blood | TMEM43 | 0.05 | 0.01 | lasso | 6 | 0.02 | 7.6e-07 | -2.25 | 6.5 | 9.1e-11 | 0.00 | 0.00 | 0.99 | FALSE |
108 | YFS | Blood | VGLL4 | 0.05 | 0.01 | blup | 507 | 0.02 | 4.0e-08 | -0.35 | -6.0 | 2.7e-09 | 0.01 | 0.95 | 0.02 | TRUE |
109 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | IL17RC | 0.07 | 0.05 | blup | 52 | 0.06 | 7.7e-06 | -5.63 | 7.9 | 3.0e-15 | 0.12 | 0.86 | 0.01 | TRUE |
110 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IL17RE | 0.01 | 0.00 | lasso | 2 | 0.00 | 1.1e-01 | -5.61 | 6.0 | 2.0e-09 | 0.10 | 0.02 | 0.02 | FALSE |
111 | The Cancer Genome Atlas | Breast Invasive Carcinoma | JAGN1 | 0.02 | 0.00 | blup | 49 | 0.01 | 2.1e-03 | -3.17 | -7.7 | 2.1e-14 | -0.15 | 0.05 | 0.04 | FALSE |
112 | The Cancer Genome Atlas | Breast Invasive Carcinoma | THUMPD3 | 0.03 | 0.02 | enet | 9 | 0.02 | 1.7e-04 | -6.39 | -5.8 | 5.6e-09 | -0.04 | 0.00 | 0.99 | FALSE |
113 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TMEM40 | 0.03 | 0.02 | lasso | 4 | 0.02 | 2.0e-04 | 6.95 | 6.5 | 1.2e-10 | 0.00 | 0.33 | 0.45 | FALSE |
114 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TSEN2 | 0.03 | 0.01 | blup | 78 | 0.02 | 2.5e-05 | -8.21 | 5.5 | 4.1e-08 | 0.01 | 0.01 | 0.95 | FALSE |
115 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | JAGN1 | 0.06 | 0.08 | lasso | 2 | 0.05 | 1.8e-03 | -6.32 | -6.6 | 5.3e-11 | -0.14 | 0.23 | 0.06 | FALSE |
116 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | TSEN2 | 0.08 | 0.02 | blup | 78 | 0.05 | 2.3e-03 | 0.98 | 5.5 | 4.1e-08 | 0.04 | 0.03 | 0.34 | FALSE |
117 | The Cancer Genome Atlas | Esophageal Carcinoma | XPC | 0.20 | 0.07 | lasso | 5 | 0.06 | 4.6e-03 | -9.34 | 7.9 | 3.2e-15 | 0.06 | 0.00 | 0.95 | TRUE |
118 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RAF1 | 0.03 | 0.02 | blup | 59 | 0.02 | 1.6e-03 | -3.97 | 6.5 | 9.8e-11 | 0.10 | 0.26 | 0.12 | FALSE |
119 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | THUMPD3 | 0.12 | 0.10 | lasso | 3 | 0.09 | 1.5e-10 | -6.38 | -6.7 | 2.3e-11 | -0.05 | 0.00 | 1.00 | FALSE |
120 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CRELD1 | 0.05 | 0.00 | enet | 9 | 0.03 | 3.5e-04 | -6.07 | -8.3 | 1.2e-16 | -0.11 | 0.08 | 0.09 | FALSE |
121 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GHRL | 0.05 | 0.02 | blup | 69 | 0.02 | 7.6e-04 | -4.57 | 5.5 | 4.1e-08 | 0.03 | 0.01 | 0.72 | FALSE |
122 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | JAGN1 | 0.07 | 0.07 | blup | 49 | 0.07 | 1.7e-08 | -6.24 | -5.6 | 2.7e-08 | -0.16 | 0.99 | 0.01 | FALSE |
123 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LMCD1 | 0.08 | 0.00 | blup | 137 | 0.04 | 2.9e-05 | -3.20 | -5.7 | 1.6e-08 | 0.00 | 0.04 | 0.78 | TRUE |
124 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | IL17RC | 0.09 | 0.08 | lasso | 1 | 0.07 | 7.2e-05 | -6.13 | 6.1 | 8.8e-10 | 0.13 | 0.30 | 0.03 | FALSE |
125 | The Cancer Genome Atlas | Brain Lower Grade Glioma | IL17RC | 0.04 | 0.03 | lasso | 3 | 0.01 | 2.5e-02 | -5.15 | 5.7 | 1.4e-08 | 0.11 | 0.27 | 0.02 | FALSE |
126 | The Cancer Genome Atlas | Brain Lower Grade Glioma | IL17RE | 0.03 | 0.04 | lasso | 2 | 0.03 | 2.3e-04 | -6.13 | 6.1 | 8.8e-10 | 0.13 | 0.76 | 0.01 | FALSE |
127 | The Cancer Genome Atlas | Brain Lower Grade Glioma | JAGN1 | 0.04 | 0.04 | blup | 49 | 0.03 | 2.6e-04 | -6.32 | -8.3 | 1.5e-16 | -0.13 | 0.63 | 0.02 | FALSE |
128 | The Cancer Genome Atlas | Brain Lower Grade Glioma | THUMPD3 | 0.25 | 0.02 | enet | 9 | 0.13 | 3.5e-14 | -6.38 | -5.9 | 3.8e-09 | -0.01 | 0.00 | 1.00 | FALSE |
129 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TTLL3 | 0.13 | 0.05 | enet | 15 | 0.06 | 1.9e-07 | -2.80 | -5.6 | 1.7e-08 | -0.01 | 0.62 | 0.07 | FALSE |
130 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MKRN2 | 0.18 | 0.03 | enet | 9 | 0.05 | 1.8e-03 | -2.17 | -5.9 | 3.9e-09 | -0.10 | 0.04 | 0.13 | FALSE |
131 | The Cancer Genome Atlas | Lung Adenocarcinoma | IL17RC | 0.03 | 0.02 | blup | 53 | 0.02 | 8.1e-04 | -3.17 | 7.7 | 1.1e-14 | 0.15 | 0.16 | 0.04 | FALSE |
132 | The Cancer Genome Atlas | Lung Adenocarcinoma | THUMPD3 | 0.19 | 0.12 | lasso | 3 | 0.12 | 8.7e-14 | -6.41 | -6.4 | 1.5e-10 | -0.06 | 0.00 | 1.00 | FALSE |
133 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CRELD1 | 0.03 | 0.00 | blup | 49 | 0.01 | 1.4e-02 | -6.02 | -9.7 | 5.1e-22 | -0.14 | 0.01 | 0.11 | FALSE |
134 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | JAGN1 | 0.03 | 0.00 | blup | 49 | 0.02 | 2.1e-03 | -5.15 | -8.0 | 1.1e-15 | -0.12 | 0.06 | 0.12 | FALSE |
135 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | JAGN1 | 0.04 | 0.06 | lasso | 1 | 0.04 | 8.9e-04 | -5.53 | -5.5 | 3.1e-08 | -0.09 | 0.14 | 0.03 | FALSE |
136 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | THUMPD3 | 0.17 | 0.08 | lasso | 8 | 0.07 | 3.4e-05 | -6.41 | -5.8 | 6.2e-09 | -0.05 | 0.00 | 1.00 | FALSE |
137 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RAD18 | 0.21 | 0.00 | blup | 138 | 0.02 | 5.9e-02 | 6.66 | -6.8 | 1.0e-11 | -0.01 | 0.01 | 0.57 | FALSE |
138 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | IL17RC | 0.08 | 0.07 | enet | 9 | 0.05 | 4.1e-03 | -6.24 | 6.0 | 2.4e-09 | 0.12 | 0.20 | 0.04 | FALSE |
139 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | THUMPD3 | 0.23 | 0.06 | lasso | 5 | 0.07 | 9.7e-04 | -6.38 | -7.2 | 6.7e-13 | -0.06 | 0.00 | 0.94 | TRUE |
140 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CIDECP | 0.04 | 0.02 | blup | 33 | 0.03 | 3.8e-04 | 5.74 | 6.6 | 5.1e-11 | 0.02 | 0.05 | 0.89 | TRUE |
141 | The Cancer Genome Atlas | Prostate Adenocarcinoma | JAGN1 | 0.03 | 0.03 | blup | 48 | 0.02 | 4.2e-03 | -5.61 | -6.6 | 4.0e-11 | -0.13 | 0.45 | 0.02 | FALSE |
142 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC401052 | 0.06 | 0.07 | enet | 6 | 0.06 | 3.5e-07 | 7.76 | -7.4 | 1.7e-13 | -0.05 | 0.01 | 0.99 | TRUE |
143 | The Cancer Genome Atlas | Prostate Adenocarcinoma | THUMPD3 | 0.07 | 0.02 | enet | 9 | 0.03 | 2.5e-04 | -3.82 | -6.0 | 2.4e-09 | -0.04 | 0.01 | 0.96 | FALSE |
144 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TSEN2 | 0.09 | 0.03 | blup | 78 | 0.06 | 5.0e-07 | -8.96 | 6.1 | 1.1e-09 | 0.08 | 0.02 | 0.98 | FALSE |
145 | The Cancer Genome Atlas | Prostate Adenocarcinoma | VGLL4 | 0.06 | 0.01 | blup | 150 | 0.02 | 5.4e-03 | -5.16 | 8.0 | 1.8e-15 | 0.02 | 0.03 | 0.51 | TRUE |
146 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CRELD1 | 0.12 | 0.01 | enet | 22 | 0.04 | 1.4e-03 | -5.15 | -8.4 | 5.8e-17 | -0.05 | 0.02 | 0.19 | FALSE |
147 | The Cancer Genome Atlas | Stomach Adenocarcinoma | IL17RC | 0.04 | 0.05 | lasso | 3 | 0.03 | 2.2e-03 | -5.63 | 5.6 | 1.8e-08 | 0.14 | 0.24 | 0.02 | FALSE |
148 | The Cancer Genome Atlas | Stomach Adenocarcinoma | TTLL3 | 0.08 | 0.05 | blup | 64 | 0.04 | 6.8e-04 | -2.80 | -6.3 | 2.5e-10 | -0.04 | 0.03 | 0.07 | FALSE |
149 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RAF1 | 0.31 | 0.16 | lasso | 4 | 0.16 | 3.8e-06 | 8.57 | 8.3 | 1.3e-16 | 0.08 | 0.26 | 0.54 | FALSE |
150 | The Cancer Genome Atlas | Thyroid Carcinoma | C3orf10 | 0.05 | 0.02 | blup | 49 | 0.04 | 9.3e-05 | 4.61 | -5.4 | 5.6e-08 | 0.01 | 0.77 | 0.10 | FALSE |
151 | The Cancer Genome Atlas | Thyroid Carcinoma | IL17RC | 0.10 | 0.14 | lasso | 5 | 0.13 | 1.5e-12 | -6.07 | 5.8 | 5.8e-09 | 0.12 | 1.00 | 0.00 | FALSE |
152 | The Cancer Genome Atlas | Thyroid Carcinoma | JAGN1 | 0.05 | 0.08 | lasso | 3 | 0.07 | 1.5e-07 | -6.13 | -6.0 | 2.5e-09 | -0.13 | 0.99 | 0.01 | FALSE |
153 | The Cancer Genome Atlas | Thyroid Carcinoma | RAD18 | 0.11 | 0.07 | lasso | 3 | 0.07 | 1.7e-07 | 6.76 | -6.8 | 8.6e-12 | 0.03 | 0.00 | 1.00 | FALSE |
154 | The Cancer Genome Atlas | Thyroid Carcinoma | THUMPD3 | 0.12 | 0.08 | enet | 10 | 0.09 | 2.1e-09 | -6.41 | -6.1 | 1.2e-09 | -0.02 | 0.00 | 1.00 | FALSE |