Best TWAS P=2.15e-65 · Best GWAS P=9.39e-50 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CDKN2D | 0.04 | 0.01 | blup | 360 | 0.01 | 3.1e-02 | -3.91 | -5.8 | 6.9e-09 | -0.43 | 0.44 | 0.08 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | GCDH | 0.22 | 0.24 | lasso | 5 | 0.25 | 1.0e-29 | -6.57 | 6.4 | 1.7e-10 | 0.04 | 1.00 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | RAVER1 | 0.06 | 0.03 | bslmm | 388 | 0.04 | 2.5e-05 | 1.39 | -5.9 | 3.1e-09 | -0.48 | 0.23 | 0.27 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | S1PR2 | 0.07 | 0.02 | bslmm | 369 | 0.03 | 5.3e-05 | -9.75 | 9.6 | 6.2e-22 | 0.31 | 0.32 | 0.14 | TRUE |
5 | CommonMind | Brain Pre-frontal Cortex | ZNF788 | 0.08 | 0.05 | lasso | 6 | 0.04 | 5.9e-06 | 11.71 | 11.7 | 1.8e-31 | -0.09 | 0.02 | 0.98 | TRUE |
6 | GTEx | Adipose Subcutaneous | EPOR | 0.11 | 0.04 | lasso | 7 | 0.04 | 3.8e-04 | 7.04 | 6.8 | 1.0e-11 | 0.39 | 0.83 | 0.01 | TRUE |
7 | GTEx | Adipose Subcutaneous | ILF3-AS1 | 0.18 | 0.05 | enet | 27 | 0.12 | 1.2e-09 | -8.53 | -14.1 | 5.3e-45 | -0.49 | 0.13 | 0.75 | FALSE |
8 | GTEx | Adipose Visceral Omentum | CTD-2369P2.2 | 0.20 | 0.00 | lasso | 4 | 0.00 | 3.2e-01 | -9.62 | 7.9 | 3.1e-15 | 0.01 | 0.05 | 0.15 | FALSE |
9 | GTEx | Adipose Visceral Omentum | ZNF442 | 0.15 | 0.01 | lasso | 5 | 0.02 | 3.7e-02 | 1.09 | -5.8 | 8.0e-09 | 0.09 | 0.03 | 0.43 | TRUE |
10 | GTEx | Adipose Visceral Omentum | S1PR2 | 0.23 | 0.01 | lasso | 5 | 0.01 | 1.1e-01 | -7.91 | 8.9 | 6.6e-19 | 0.10 | 0.06 | 0.21 | FALSE |
11 | GTEx | Artery Aorta | ILF3-AS1 | 0.13 | 0.05 | lasso | 6 | 0.06 | 4.5e-04 | -9.77 | -11.3 | 1.5e-29 | -0.16 | 0.37 | 0.27 | FALSE |
12 | GTEx | Artery Coronary | KRI1 | 0.30 | 0.05 | lasso | 6 | 0.06 | 6.0e-03 | 5.85 | -5.8 | 5.5e-09 | -0.15 | 0.13 | 0.05 | TRUE |
13 | GTEx | Artery Tibial | GCDH | 0.08 | 0.10 | lasso | 3 | 0.09 | 1.8e-07 | -6.64 | 6.9 | 6.3e-12 | 0.01 | 0.94 | 0.00 | FALSE |
14 | GTEx | Brain Caudate basal ganglia | FARSA | 0.22 | 0.08 | lasso | 3 | 0.04 | 3.0e-02 | 7.16 | 7.0 | 2.5e-12 | 0.03 | 0.08 | 0.11 | FALSE |
15 | GTEx | Brain Cerebellar Hemisphere | GCDH | 0.62 | 0.43 | lasso | 5 | 0.49 | 1.7e-14 | -6.64 | 7.2 | 6.0e-13 | 0.00 | 0.99 | 0.00 | FALSE |
16 | GTEx | Brain Cerebellar Hemisphere | DNASE2 | 0.46 | 0.10 | lasso | 8 | 0.06 | 9.8e-03 | 5.31 | 5.1 | 2.7e-07 | 0.04 | 0.07 | 0.14 | FALSE |
17 | GTEx | Brain Cerebellum | GCDH | 0.48 | 0.48 | lasso | 6 | 0.49 | 1.5e-16 | -6.57 | 7.4 | 1.2e-13 | 0.02 | 1.00 | 0.00 | FALSE |
18 | GTEx | Brain Cerebellum | AD000092.3 | 0.40 | 0.15 | lasso | 3 | 0.19 | 2.2e-06 | -6.64 | 7.7 | 1.5e-14 | 0.02 | 0.69 | 0.02 | TRUE |
19 | GTEx | Brain Cortex | PDE4A | 0.57 | 0.00 | enet | 39 | 0.10 | 1.3e-03 | 7.90 | -5.7 | 1.3e-08 | -0.13 | 0.07 | 0.05 | FALSE |
20 | GTEx | Brain Cortex | GCDH | 0.33 | 0.23 | lasso | 4 | 0.26 | 7.7e-08 | 7.16 | 7.7 | 1.3e-14 | 0.02 | 0.90 | 0.02 | FALSE |
21 | GTEx | Brain Frontal Cortex BA9 | GCDH | 0.28 | 0.31 | lasso | 1 | 0.25 | 3.0e-07 | -6.64 | 6.6 | 3.2e-11 | 0.00 | 0.87 | 0.01 | FALSE |
22 | GTEx | Brain Frontal Cortex BA9 | ZNF443 | 0.20 | 0.00 | enet | 29 | -0.01 | 7.5e-01 | 6.31 | 5.8 | 6.3e-09 | -0.03 | 0.03 | 0.05 | TRUE |
23 | GTEx | Brain Hippocampus | ICAM3 | 0.49 | 0.19 | lasso | 6 | 0.08 | 6.9e-03 | -1.94 | -6.1 | 1.0e-09 | -0.17 | 0.08 | 0.09 | TRUE |
24 | GTEx | Breast Mammary Tissue (Female) | KRI1 | 0.17 | 0.03 | lasso | 3 | 0.03 | 3.5e-02 | -5.74 | -7.0 | 3.3e-12 | -0.36 | 0.04 | 0.06 | FALSE |
25 | GTEx | Breast Mammary Tissue (Female) | ZNF443 | 0.05 | -0.01 | lasso | 4 | 0.00 | 3.4e-01 | 6.70 | 5.9 | 3.8e-09 | -0.05 | 0.03 | 0.06 | FALSE |
26 | GTEx | Cells EBV-transformed lymphocytes | FARSA | 0.26 | 0.24 | lasso | 5 | 0.18 | 2.3e-06 | 7.57 | 8.1 | 6.3e-16 | 0.03 | 0.84 | 0.02 | FALSE |
27 | GTEx | Cells EBV-transformed lymphocytes | RAD23A | 0.20 | 0.05 | lasso | 3 | 0.04 | 1.7e-02 | 5.31 | 6.8 | 1.4e-11 | 0.05 | 0.12 | 0.07 | FALSE |
28 | GTEx | Cells EBV-transformed lymphocytes | CTD-3105H18.4 | 0.20 | 0.20 | lasso | 3 | 0.16 | 6.9e-06 | 6.73 | -7.8 | 4.6e-15 | 0.06 | 0.32 | 0.27 | TRUE |
29 | GTEx | Cells EBV-transformed lymphocytes | CTD-3105H18.14 | 0.22 | 0.20 | lasso | 3 | 0.18 | 1.8e-06 | 6.73 | -8.1 | 4.4e-16 | 0.06 | 0.35 | 0.22 | FALSE |
30 | GTEx | Cells Transformed fibroblasts | CARM1 | 0.11 | 0.01 | lasso | 4 | 0.00 | 6.9e-01 | 5.79 | 5.5 | 4.1e-08 | 0.35 | 0.29 | 0.03 | TRUE |
31 | GTEx | Cells Transformed fibroblasts | CTD-3105H18.4 | 0.16 | 0.14 | enet | 4 | 0.13 | 6.0e-10 | 6.86 | -6.9 | 4.1e-12 | 0.05 | 1.00 | 0.00 | FALSE |
32 | GTEx | Cells Transformed fibroblasts | CTD-3105H18.14 | 0.17 | 0.12 | enet | 5 | 0.12 | 1.3e-09 | 6.86 | -6.9 | 6.7e-12 | 0.05 | 1.00 | 0.00 | FALSE |
33 | GTEx | Colon Transverse | SMARCA4 | 0.21 | -0.01 | enet | 21 | 0.00 | 1.8e-01 | 8.34 | -6.6 | 5.1e-11 | -0.27 | 0.06 | 0.04 | TRUE |
34 | GTEx | Colon Transverse | KRI1 | 0.22 | 0.00 | enet | 11 | 0.12 | 2.9e-06 | -1.74 | -5.8 | 8.0e-09 | -0.20 | 0.20 | 0.04 | FALSE |
35 | GTEx | Colon Transverse | ILF3-AS1 | 0.17 | 0.11 | lasso | 4 | 0.10 | 2.1e-05 | -8.55 | -10.0 | 9.6e-24 | -0.14 | 0.20 | 0.14 | FALSE |
36 | GTEx | Esophagus Gastroesophageal Junction | ZNF443 | 0.18 | 0.01 | enet | 15 | 0.04 | 1.4e-02 | 7.46 | 6.6 | 4.8e-11 | 0.00 | 0.07 | 0.10 | FALSE |
37 | GTEx | Esophagus Mucosa | PRKACA | 0.23 | 0.27 | lasso | 6 | 0.24 | 2.4e-16 | 5.16 | 5.2 | 2.0e-07 | -0.02 | 0.04 | 0.96 | FALSE |
38 | GTEx | Esophagus Mucosa | GCDH | 0.26 | 0.28 | lasso | 2 | 0.27 | 5.2e-18 | -6.57 | 6.6 | 3.2e-11 | 0.02 | 1.00 | 0.00 | FALSE |
39 | GTEx | Esophagus Mucosa | SLC44A2 | 0.13 | 0.00 | lasso | 6 | 0.02 | 1.4e-02 | 6.47 | -10.4 | 3.9e-25 | -0.46 | 0.05 | 0.69 | TRUE |
40 | GTEx | Esophagus Mucosa | SAMD1 | 0.16 | 0.09 | lasso | 4 | 0.05 | 1.5e-04 | 5.16 | 5.2 | 1.9e-07 | -0.02 | 0.03 | 0.97 | FALSE |
41 | GTEx | Esophagus Mucosa | ILF3-AS1 | 0.11 | 0.00 | lasso | 4 | 0.00 | 2.5e-01 | 14.79 | -17.1 | 2.2e-65 | -0.77 | 0.02 | 0.88 | TRUE |
42 | GTEx | Esophagus Muscularis | HOOK2 | 0.13 | 0.04 | lasso | 3 | 0.00 | 3.3e-01 | 7.55 | -7.3 | 2.5e-13 | -0.02 | 0.15 | 0.04 | FALSE |
43 | GTEx | Esophagus Muscularis | SMARCA4 | 0.16 | 0.00 | lasso | 6 | 0.03 | 7.2e-03 | 6.96 | -5.5 | 4.2e-08 | -0.21 | 0.17 | 0.09 | FALSE |
44 | GTEx | Esophagus Muscularis | CTD-3105H18.4 | 0.13 | 0.00 | enet | 5 | 0.02 | 3.4e-02 | 6.85 | -6.0 | 1.7e-09 | 0.06 | 0.06 | 0.08 | FALSE |
45 | GTEx | Heart Left Ventricle | ILF3-AS1 | 0.16 | 0.06 | lasso | 9 | 0.04 | 3.1e-03 | -9.77 | -12.3 | 6.5e-35 | -0.16 | 0.13 | 0.08 | FALSE |
46 | GTEx | Lung | GCDH | 0.25 | 0.14 | enet | 16 | 0.15 | 1.7e-11 | 7.39 | 8.2 | 3.7e-16 | -0.01 | 1.00 | 0.00 | TRUE |
47 | GTEx | Lung | ILF3-AS1 | 0.11 | 0.10 | lasso | 4 | 0.09 | 1.8e-07 | -9.77 | -12.1 | 1.2e-33 | -0.26 | 0.84 | 0.12 | FALSE |
48 | GTEx | Muscle Skeletal | GCDH | 0.13 | 0.00 | enet | 11 | 0.00 | 4.6e-01 | 2.13 | 6.5 | 8.7e-11 | -0.03 | 0.15 | 0.04 | TRUE |
49 | GTEx | Muscle Skeletal | SLC44A2 | 0.19 | 0.18 | lasso | 5 | 0.19 | 5.1e-18 | 14.74 | 15.3 | 4.5e-53 | 0.79 | 0.02 | 0.98 | FALSE |
50 | GTEx | Muscle Skeletal | FARSA | 0.05 | 0.05 | lasso | 3 | 0.05 | 1.3e-05 | 7.48 | 7.3 | 3.7e-13 | 0.04 | 0.97 | 0.01 | FALSE |
51 | GTEx | Muscle Skeletal | CTD-3105H18.4 | 0.13 | 0.07 | lasso | 6 | 0.05 | 1.5e-05 | 6.86 | -6.6 | 4.0e-11 | 0.04 | 0.98 | 0.00 | FALSE |
52 | GTEx | Muscle Skeletal | CTD-3105H18.14 | 0.15 | 0.09 | lasso | 8 | 0.07 | 1.4e-07 | 6.86 | -6.8 | 7.2e-12 | 0.04 | 1.00 | 0.00 | TRUE |
53 | GTEx | Nerve Tibial | MAN2B1 | 0.14 | 0.01 | enet | 57 | 0.03 | 4.0e-03 | 2.08 | -6.3 | 3.9e-10 | 0.16 | 0.62 | 0.01 | FALSE |
54 | GTEx | Nerve Tibial | CTD-3105H18.4 | 0.16 | 0.03 | lasso | 5 | 0.02 | 1.7e-02 | 6.82 | -6.1 | 1.0e-09 | 0.06 | 0.29 | 0.03 | FALSE |
55 | GTEx | Nerve Tibial | ILF3-AS1 | 0.14 | 0.04 | lasso | 3 | 0.08 | 3.8e-06 | 14.66 | -16.4 | 3.5e-60 | -0.77 | 0.01 | 0.98 | FALSE |
56 | GTEx | Ovary | GCDH | 0.35 | 0.02 | enet | 1 | 0.02 | 1.3e-01 | 6.54 | 6.5 | 6.3e-11 | 0.03 | 0.09 | 0.05 | FALSE |
57 | GTEx | Ovary | KRI1 | 0.32 | 0.10 | lasso | 4 | 0.05 | 2.8e-02 | -4.89 | -5.7 | 9.5e-09 | -0.39 | 0.09 | 0.37 | FALSE |
58 | GTEx | Pancreas | GCDH | 0.19 | 0.10 | lasso | 6 | 0.09 | 1.1e-04 | 6.54 | 6.4 | 1.9e-10 | 0.01 | 0.57 | 0.04 | FALSE |
59 | GTEx | Pancreas | ZNF333 | 0.23 | 0.16 | lasso | 3 | 0.16 | 3.0e-07 | -4.55 | 5.2 | 2.2e-07 | 0.03 | 0.30 | 0.37 | FALSE |
60 | GTEx | Pancreas | FARSA | 0.18 | 0.01 | enet | 12 | 0.07 | 9.3e-04 | 6.44 | 6.4 | 1.4e-10 | 0.08 | 0.15 | 0.16 | FALSE |
61 | GTEx | Pituitary | GCDH | 0.42 | 0.30 | lasso | 5 | 0.29 | 4.2e-08 | 7.55 | 7.5 | 4.8e-14 | 0.02 | 0.83 | 0.04 | FALSE |
62 | GTEx | Skin Not Sun Exposed Suprapubic | CTD-3105H18.14 | 0.11 | 0.06 | enet | 10 | 0.06 | 3.8e-04 | 6.86 | -7.2 | 4.5e-13 | 0.06 | 0.63 | 0.14 | FALSE |
63 | GTEx | Skin Sun Exposed Lower leg | GCDH | 0.16 | 0.21 | lasso | 3 | 0.20 | 1.4e-16 | -6.64 | 6.8 | 1.0e-11 | 0.00 | 1.00 | 0.00 | FALSE |
64 | GTEx | Skin Sun Exposed Lower leg | SMARCA4 | 0.15 | 0.10 | enet | 25 | 0.15 | 1.4e-12 | 6.93 | -8.0 | 1.1e-15 | -0.61 | 1.00 | 0.00 | FALSE |
65 | GTEx | Skin Sun Exposed Lower leg | SLC44A2 | 0.20 | 0.21 | lasso | 4 | 0.21 | 1.5e-17 | 2.79 | -5.5 | 2.8e-08 | -0.41 | 1.00 | 0.00 | FALSE |
66 | GTEx | Skin Sun Exposed Lower leg | YIPF2 | 0.05 | 0.05 | lasso | 2 | 0.04 | 1.6e-04 | 7.34 | -7.2 | 6.5e-13 | -0.45 | 0.74 | 0.02 | FALSE |
67 | GTEx | Skin Sun Exposed Lower leg | RAVER1 | 0.11 | 0.03 | lasso | 4 | 0.03 | 7.1e-04 | -6.17 | -5.8 | 4.8e-09 | -0.10 | 0.62 | 0.02 | TRUE |
68 | GTEx | Skin Sun Exposed Lower leg | ILF3-AS1 | 0.14 | 0.08 | enet | 14 | 0.06 | 5.9e-06 | -9.80 | -12.0 | 2.3e-33 | -0.35 | 0.93 | 0.05 | FALSE |
69 | GTEx | Small Intestine Terminal Ileum | CTC-425F1.4 | 0.26 | 0.13 | enet | 22 | 0.08 | 6.1e-03 | 1.47 | -5.7 | 9.5e-09 | 0.01 | 0.06 | 0.06 | TRUE |
70 | GTEx | Spleen | MAN2B1 | 0.33 | -0.01 | enet | 25 | 0.06 | 1.6e-02 | 6.31 | -6.7 | 2.0e-11 | 0.11 | 0.04 | 0.07 | FALSE |
71 | GTEx | Spleen | SYCE2 | 0.38 | 0.05 | lasso | 7 | 0.01 | 1.7e-01 | -6.64 | -5.1 | 2.8e-07 | -0.02 | 0.04 | 0.06 | FALSE |
72 | GTEx | Spleen | CTB-55O6.12 | 0.36 | 0.14 | lasso | 5 | 0.11 | 1.1e-03 | 5.08 | -5.3 | 1.3e-07 | -0.03 | 0.02 | 0.90 | TRUE |
73 | GTEx | Testis | PDE4A | 0.20 | 0.02 | enet | 39 | 0.04 | 6.4e-03 | 5.15 | 6.7 | 2.0e-11 | 0.06 | 0.06 | 0.04 | TRUE |
74 | GTEx | Testis | ZNF333 | 0.21 | 0.17 | enet | 11 | 0.20 | 4.6e-09 | 5.50 | -5.3 | 1.4e-07 | -0.04 | 0.00 | 0.99 | TRUE |
75 | GTEx | Testis | JUNB | 0.21 | -0.01 | lasso | 7 | 0.00 | 1.9e-01 | 7.95 | 9.5 | 1.6e-21 | -0.07 | 0.04 | 0.05 | FALSE |
76 | GTEx | Testis | ZNF442 | 0.16 | 0.06 | enet | 3 | 0.02 | 4.4e-02 | 6.86 | 8.3 | 1.3e-16 | -0.06 | 0.05 | 0.54 | FALSE |
77 | GTEx | Testis | CTD-3105H18.4 | 0.28 | 0.16 | lasso | 3 | 0.13 | 2.0e-06 | 6.86 | -5.8 | 5.1e-09 | 0.04 | 0.94 | 0.02 | FALSE |
78 | GTEx | Testis | CTC-425F1.4 | 0.14 | 0.03 | enet | 9 | 0.05 | 2.0e-03 | 7.48 | -5.9 | 2.8e-09 | -0.07 | 0.20 | 0.04 | FALSE |
79 | GTEx | Testis | CTD-3105H18.14 | 0.27 | 0.16 | lasso | 5 | 0.13 | 1.7e-06 | 6.86 | -6.1 | 1.3e-09 | 0.04 | 0.94 | 0.01 | FALSE |
80 | GTEx | Thyroid | KRI1 | 0.39 | 0.15 | enet | 51 | 0.32 | 1.7e-25 | -4.89 | -6.0 | 2.5e-09 | -0.28 | 1.00 | 0.00 | FALSE |
81 | GTEx | Thyroid | ZNF333 | 0.26 | 0.10 | lasso | 6 | 0.15 | 7.5e-12 | 5.50 | -5.2 | 1.7e-07 | -0.04 | 0.01 | 0.99 | FALSE |
82 | GTEx | Thyroid | SYCE2 | 0.09 | 0.10 | lasso | 1 | 0.09 | 2.2e-07 | -6.64 | -6.6 | 3.2e-11 | 0.00 | 0.98 | 0.00 | FALSE |
83 | GTEx | Vagina | GCDH | 0.36 | 0.01 | lasso | 5 | 0.00 | 3.3e-01 | 7.39 | 6.4 | 1.4e-10 | 0.01 | 0.04 | 0.07 | FALSE |
84 | GTEx | Vagina | CTD-2369P2.2 | 0.50 | -0.01 | lasso | 9 | 0.01 | 2.0e-01 | 11.70 | 8.4 | 5.3e-17 | 0.01 | 0.21 | 0.15 | TRUE |
85 | GTEx | Whole Blood | HOOK2 | 0.07 | 0.01 | enet | 19 | 0.02 | 8.1e-03 | 1.41 | -5.5 | 5.0e-08 | -0.04 | 0.13 | 0.06 | FALSE |
86 | GTEx | Whole Blood | GCDH | 0.10 | 0.03 | lasso | 4 | 0.03 | 1.4e-03 | -6.64 | 7.8 | 8.2e-15 | 0.01 | 0.36 | 0.03 | FALSE |
87 | GTEx | Whole Blood | SLC44A2 | 0.11 | 0.01 | enet | 30 | 0.02 | 5.2e-03 | 14.69 | -9.1 | 7.5e-20 | -0.60 | 0.02 | 0.92 | FALSE |
88 | GTEx | Whole Blood | C19orf66 | 0.08 | 0.02 | lasso | 4 | 0.07 | 5.9e-07 | -0.61 | -5.4 | 5.6e-08 | -0.08 | 0.18 | 0.03 | FALSE |
89 | GTEx | Whole Blood | CTD-2369P2.8 | 0.12 | 0.11 | lasso | 3 | 0.10 | 9.2e-10 | 6.05 | 6.5 | 5.6e-11 | 0.06 | 1.00 | 0.00 | TRUE |
90 | NTR | Blood | CALR | 0.04 | 0.03 | lasso | 8 | 0.02 | 4.2e-08 | 6.46 | -6.5 | 1.1e-10 | -0.05 | 1.00 | 0.00 | FALSE |
91 | NTR | Blood | SMARCA4 | 0.07 | 0.06 | lasso | 11 | 0.06 | 9.0e-18 | 7.27 | -8.0 | 9.5e-16 | -0.43 | 1.00 | 0.00 | FALSE |
92 | ROSMAP | Brain Pre-frontal Cortex | GCDH | 0.26 | 0.26 | lasso | 11 | 0.25 | 6.1e-32 | -6.57 | 6.5 | 8.3e-11 | 0.02 | 1.00 | 0.00 | FALSE |
93 | ROSMAP | Brain Pre-frontal Cortex | AP1M2 | 0.09 | 0.01 | lasso | 5 | 0.03 | 3.3e-05 | 6.47 | 8.9 | 4.2e-19 | 0.37 | 0.13 | 0.22 | FALSE |
94 | ROSMAP | Brain Pre-frontal Cortex | CDKN2D | 0.14 | 0.06 | lasso | 5 | 0.10 | 8.8e-13 | 4.00 | -5.3 | 1.1e-07 | -0.23 | 1.00 | 0.00 | FALSE |
95 | ROSMAP | Brain Pre-frontal Cortex | ZNF799 | 0.04 | 0.04 | lasso | 1 | 0.02 | 7.6e-04 | 6.86 | -6.9 | 6.9e-12 | 0.05 | 0.58 | 0.02 | FALSE |
96 | ROSMAP | Brain Pre-frontal Cortex | ILF3-AS1 | 0.15 | 0.04 | bslmm | 354 | 0.18 | 7.1e-22 | -8.53 | -16.3 | 5.1e-60 | -0.61 | 0.04 | 0.96 | FALSE |
97 | YFS | Blood | DNMT1 | 0.15 | 0.11 | bslmm | 383 | 0.12 | 3.1e-38 | 5.72 | 5.5 | 2.9e-08 | 0.00 | 1.00 | 0.00 | FALSE |
98 | YFS | Blood | FARSA | 0.02 | 0.03 | lasso | 1 | 0.02 | 1.3e-07 | -6.57 | 6.6 | 4.9e-11 | 0.02 | 1.00 | 0.00 | FALSE |
99 | YFS | Blood | SLC44A2 | 0.13 | 0.07 | bslmm | 378 | 0.10 | 1.7e-31 | 14.61 | -6.3 | 2.5e-10 | -0.40 | 0.05 | 0.95 | FALSE |
100 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CALR | 0.01 | 0.01 | enet | 4 | 0.01 | 8.3e-04 | 7.46 | -6.5 | 9.3e-11 | -0.03 | 0.01 | 0.60 | FALSE |
101 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LOC147727 | 0.19 | 0.01 | enet | 16 | 0.05 | 3.0e-10 | 14.66 | -9.2 | 2.5e-20 | -0.47 | 0.00 | 0.51 | FALSE |
102 | The Cancer Genome Atlas | Breast Invasive Carcinoma | S1PR2 | 0.02 | 0.00 | blup | 32 | 0.01 | 1.5e-02 | -10.22 | 10.4 | 2.9e-25 | 0.04 | 0.01 | 0.03 | TRUE |
103 | The Cancer Genome Atlas | Glioblastoma Multiforme | GCDH | 0.19 | 0.13 | enet | 5 | 0.09 | 9.4e-04 | -6.57 | 6.2 | 6.1e-10 | 0.02 | 0.02 | 0.33 | FALSE |
104 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | KRI1 | 0.06 | 0.06 | lasso | 1 | 0.06 | 5.3e-07 | 7.89 | 7.9 | 2.9e-15 | 0.48 | 0.42 | 0.53 | FALSE |
105 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C19orf52 | 0.04 | 0.04 | blup | 27 | 0.03 | 1.7e-04 | 6.86 | -6.1 | 1.0e-09 | -0.34 | 0.03 | 0.96 | TRUE |
106 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DAND5 | 0.03 | 0.02 | blup | 31 | 0.03 | 3.0e-04 | 5.31 | -5.7 | 9.9e-09 | -0.02 | 0.01 | 0.94 | TRUE |
107 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DNASE2 | 0.04 | 0.01 | enet | 6 | 0.02 | 1.1e-03 | -3.85 | -5.8 | 9.1e-09 | 0.00 | 0.01 | 0.43 | FALSE |
108 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC147727 | 0.13 | 0.02 | blup | 28 | 0.04 | 7.2e-05 | 14.64 | -16.3 | 1.5e-59 | -0.76 | 0.01 | 0.88 | FALSE |
109 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | P2RY11 | 0.05 | 0.03 | blup | 38 | 0.03 | 4.8e-04 | -1.22 | 5.8 | 6.8e-09 | 0.00 | 0.03 | 0.24 | FALSE |
110 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ZNF844 | 0.02 | 0.01 | blup | 27 | 0.01 | 9.2e-03 | 8.30 | -7.5 | 6.5e-14 | 0.10 | 0.03 | 0.21 | FALSE |
111 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CALR | 0.03 | 0.01 | blup | 32 | 0.01 | 1.2e-02 | 5.31 | -6.4 | 1.4e-10 | -0.05 | 0.01 | 0.72 | TRUE |
112 | The Cancer Genome Atlas | Brain Lower Grade Glioma | FARSA | 0.05 | 0.04 | blup | 33 | 0.05 | 1.8e-06 | -6.57 | 5.8 | 7.7e-09 | 0.03 | 0.04 | 0.96 | FALSE |
113 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GCDH | 0.41 | 0.17 | lasso | 2 | 0.16 | 3.3e-18 | -6.57 | 6.6 | 5.2e-11 | 0.02 | 0.86 | 0.14 | FALSE |
114 | The Cancer Genome Atlas | Brain Lower Grade Glioma | KANK2 | 0.28 | 0.26 | lasso | 3 | 0.26 | 4.6e-29 | -11.22 | -11.1 | 7.3e-29 | 0.00 | 0.00 | 1.00 | TRUE |
115 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LOC147727 | 0.07 | 0.02 | lasso | 2 | 0.02 | 5.4e-03 | 14.79 | -15.5 | 2.5e-54 | -0.99 | 0.01 | 0.86 | TRUE |
116 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SLC44A2 | 0.09 | -0.01 | blup | 59 | 0.03 | 1.1e-02 | 14.72 | -9.8 | 1.5e-22 | -0.55 | 0.01 | 0.23 | FALSE |
117 | The Cancer Genome Atlas | Lung Adenocarcinoma | KRI1 | 0.05 | 0.04 | blup | 51 | 0.03 | 7.3e-05 | 7.85 | 8.1 | 8.0e-16 | 0.41 | 0.25 | 0.62 | TRUE |
118 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | MAST1 | 0.08 | 0.04 | lasso | 5 | 0.05 | 4.1e-04 | -3.60 | -5.5 | 3.0e-08 | -0.01 | 0.02 | 0.63 | TRUE |
119 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KANK2 | 0.09 | 0.04 | blup | 76 | 0.06 | 9.5e-07 | -11.03 | -7.5 | 6.4e-14 | 0.01 | 0.00 | 0.99 | FALSE |
120 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SPC24 | 0.06 | 0.00 | enet | 15 | 0.01 | 1.4e-02 | 5.27 | -5.4 | 5.4e-08 | -0.21 | 0.01 | 0.06 | TRUE |
121 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GCDH | 0.13 | 0.08 | lasso | 3 | 0.07 | 7.7e-06 | -6.57 | 6.1 | 1.2e-09 | 0.02 | 0.50 | 0.14 | FALSE |
122 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ZNF763 | 0.07 | 0.03 | blup | 35 | 0.04 | 4.9e-04 | -3.12 | 6.0 | 1.9e-09 | 0.05 | 0.01 | 0.54 | TRUE |
123 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | GCDH | 0.23 | 0.02 | lasso | 2 | 0.06 | 4.5e-03 | -3.30 | 5.4 | 6.8e-08 | 0.05 | 0.02 | 0.42 | FALSE |
124 | The Cancer Genome Atlas | Thyroid Carcinoma | C19orf52 | 0.05 | 0.06 | lasso | 4 | 0.06 | 2.5e-06 | 5.80 | -6.6 | 4.8e-11 | -0.42 | 0.01 | 0.98 | FALSE |
125 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC147727 | 0.24 | 0.02 | enet | 18 | 0.07 | 6.1e-07 | 14.72 | -14.7 | 3.4e-49 | -0.35 | 0.01 | 0.37 | TRUE |
126 | The Cancer Genome Atlas | Thyroid Carcinoma | S1PR5 | 0.06 | 0.02 | blup | 41 | 0.03 | 8.3e-04 | 0.30 | 5.9 | 3.1e-09 | 0.20 | 0.01 | 0.70 | TRUE |
127 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC44A2 | 0.32 | 0.22 | enet | 14 | 0.25 | 3.8e-24 | 11.21 | 9.1 | 8.1e-20 | 0.85 | 1.00 | 0.00 | FALSE |