Best TWAS P=8.8e-27 · Best GWAS P=7.5e-28 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FAM173A | 0.06 | 0.05 | enet | 11 | 0.04 | 1.9e-05 | 5.785 | 7.8 | 6.4e-15 | -0.04 | 0.49 | 0.27 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | SLC9A3R2 | 0.15 | 0.09 | enet | 7 | 0.10 | 7.8e-12 | -7.417 | 7.0 | 2.1e-12 | -0.59 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Subcutaneous | NARFL | 0.23 | 0.25 | enet | 13 | 0.25 | 2.2e-20 | 7.059 | 7.3 | 3.9e-13 | -0.02 | 0.05 | 0.95 | FALSE |
4 | GTEx | Adipose Subcutaneous | HAGHL | 0.16 | 0.04 | lasso | 7 | 0.02 | 1.3e-02 | 7.159 | 5.5 | 5.1e-08 | 0.04 | 0.04 | 0.83 | FALSE |
5 | GTEx | Adipose Visceral Omentum | NARFL | 0.20 | 0.30 | lasso | 2 | 0.29 | 2.6e-15 | 7.059 | 7.1 | 1.1e-12 | 0.00 | 0.05 | 0.95 | FALSE |
6 | GTEx | Adipose Visceral Omentum | BRICD5 | 0.12 | 0.01 | lasso | 4 | 0.03 | 8.7e-03 | -7.261 | -9.2 | 3.8e-20 | 0.17 | 0.12 | 0.04 | FALSE |
7 | GTEx | Adrenal Gland | Z97634.3 | 0.30 | 0.01 | enet | 28 | 0.05 | 8.6e-03 | -0.417 | -5.1 | 2.9e-07 | 0.05 | 0.04 | 0.10 | TRUE |
8 | GTEx | Artery Aorta | MRPL28 | 0.22 | 0.04 | enet | 6 | 0.08 | 2.8e-05 | -4.468 | -5.1 | 2.8e-07 | 0.01 | 0.13 | 0.08 | FALSE |
9 | GTEx | Artery Aorta | TSC2 | 0.08 | 0.02 | enet | 7 | 0.03 | 5.0e-03 | -5.709 | 5.7 | 1.1e-08 | -0.52 | 0.14 | 0.31 | FALSE |
10 | GTEx | Artery Aorta | LMF1 | 0.22 | 0.06 | enet | 37 | 0.04 | 4.7e-03 | 3.818 | 6.8 | 1.4e-11 | 0.08 | 0.03 | 0.90 | FALSE |
11 | GTEx | Artery Aorta | NARFL | 0.41 | 0.36 | lasso | 7 | 0.35 | 4.6e-20 | 7.059 | 7.2 | 6.6e-13 | -0.01 | 0.05 | 0.95 | FALSE |
12 | GTEx | Artery Aorta | RHBDL1 | 0.14 | 0.07 | enet | 13 | 0.11 | 1.4e-06 | 5.375 | 5.5 | 3.4e-08 | -0.02 | 0.97 | 0.00 | FALSE |
13 | GTEx | Artery Aorta | ARHGDIG | 0.30 | 0.00 | lasso | 11 | 0.05 | 1.4e-03 | 0.028 | 5.8 | 7.2e-09 | 0.07 | 0.10 | 0.06 | FALSE |
14 | GTEx | Artery Coronary | NARFL | 0.26 | 0.16 | lasso | 6 | 0.05 | 1.1e-02 | 7.059 | 7.2 | 7.8e-13 | 0.00 | 0.05 | 0.83 | FALSE |
15 | GTEx | Artery Tibial | NARFL | 0.14 | 0.16 | lasso | 2 | 0.15 | 1.2e-11 | 7.059 | 7.1 | 1.3e-12 | -0.01 | 0.05 | 0.95 | FALSE |
16 | GTEx | Artery Tibial | C16orf13 | 0.22 | 0.16 | enet | 23 | 0.19 | 1.0e-14 | 4.247 | 5.5 | 4.3e-08 | -0.04 | 1.00 | 0.00 | FALSE |
17 | GTEx | Artery Tibial | BRICD5 | 0.28 | 0.21 | lasso | 3 | 0.27 | 1.8e-21 | 9.654 | -8.1 | 7.8e-16 | -0.03 | 1.00 | 0.00 | FALSE |
18 | GTEx | Brain Cerebellar Hemisphere | ZNF500 | 0.27 | 0.13 | enet | 13 | 0.12 | 4.4e-04 | 1.854 | 5.7 | 1.6e-08 | -0.02 | 0.06 | 0.84 | TRUE |
19 | GTEx | Brain Cerebellar Hemisphere | LMF1 | 0.37 | 0.16 | enet | 26 | 0.26 | 1.7e-07 | 4.827 | -7.1 | 1.1e-12 | -0.02 | 0.02 | 0.97 | FALSE |
20 | GTEx | Brain Cerebellar Hemisphere | CCDC78 | 0.21 | 0.12 | enet | 12 | 0.12 | 6.2e-04 | -6.539 | -8.8 | 1.3e-18 | 0.01 | 0.16 | 0.34 | TRUE |
21 | GTEx | Brain Cerebellar Hemisphere | LA16c-366D3.1 | 0.45 | 0.02 | lasso | 9 | 0.12 | 5.9e-04 | 4.389 | -6.6 | 3.5e-11 | -0.02 | 0.04 | 0.53 | FALSE |
22 | GTEx | Brain Cerebellum | LMF1 | 0.17 | 0.10 | enet | 16 | 0.14 | 7.5e-05 | 7.224 | -7.3 | 2.6e-13 | -0.05 | 0.02 | 0.96 | FALSE |
23 | GTEx | Brain Cerebellum | NARFL | 0.23 | 0.27 | lasso | 2 | 0.24 | 1.3e-07 | 7.059 | 7.1 | 1.3e-12 | -0.01 | 0.05 | 0.93 | FALSE |
24 | GTEx | Brain Cerebellum | LA16c-349E10.1 | 0.18 | 0.21 | lasso | 6 | 0.19 | 3.4e-06 | 5.375 | -5.5 | 4.5e-08 | 0.00 | 0.58 | 0.03 | FALSE |
25 | GTEx | Brain Cortex | LMF1 | 0.33 | 0.12 | lasso | 4 | 0.12 | 2.9e-04 | 5.756 | 5.8 | 8.8e-09 | 0.09 | 0.06 | 0.86 | FALSE |
26 | GTEx | Brain Cortex | RP11-161M6.2 | 0.49 | 0.16 | lasso | 5 | 0.24 | 3.0e-07 | 5.758 | -5.3 | 9.2e-08 | -0.08 | 0.38 | 0.43 | FALSE |
27 | GTEx | Brain Hypothalamus | NARFL | 0.23 | 0.12 | lasso | 4 | 0.12 | 1.1e-03 | 4.039 | 6.4 | 1.4e-10 | -0.04 | 0.09 | 0.14 | TRUE |
28 | GTEx | Breast Mammary Tissue | BRICD5 | 0.16 | 0.08 | lasso | 5 | 0.02 | 3.4e-02 | 8.100 | -9.2 | 3.0e-20 | 0.01 | 0.57 | 0.02 | FALSE |
29 | GTEx | Breast Mammary Tissue (Female) | BRICD5 | 0.06 | 0.00 | enet | 4 | 0.03 | 3.5e-02 | 9.654 | -7.5 | 8.8e-14 | -0.05 | 0.03 | 0.05 | FALSE |
30 | GTEx | Cells EBV-transformed lymphocytes | LMF1 | 0.22 | 0.16 | enet | 11 | 0.24 | 2.2e-08 | 3.818 | 6.4 | 1.3e-10 | 0.02 | 0.05 | 0.92 | FALSE |
31 | GTEx | Cells Transformed fibroblasts | LMF1 | 0.36 | 0.23 | enet | 44 | 0.28 | 3.6e-21 | 5.305 | 5.6 | 1.7e-08 | 0.01 | 0.99 | 0.01 | FALSE |
32 | GTEx | Cells Transformed fibroblasts | RHBDL1 | 0.22 | 0.10 | lasso | 7 | 0.07 | 2.9e-06 | 5.482 | 5.3 | 1.4e-07 | -0.04 | 0.99 | 0.00 | FALSE |
33 | GTEx | Cells Transformed fibroblasts | LA16c-366D3.1 | 0.09 | 0.02 | lasso | 5 | 0.05 | 2.3e-04 | 7.205 | -6.5 | 8.2e-11 | -0.06 | 0.03 | 0.93 | FALSE |
34 | GTEx | Colon Sigmoid | NARFL | 0.40 | 0.40 | lasso | 2 | 0.33 | 1.9e-12 | 7.059 | 7.1 | 1.5e-12 | 0.00 | 0.05 | 0.95 | FALSE |
35 | GTEx | Colon Transverse | MRPL28 | 0.24 | 0.14 | lasso | 5 | 0.15 | 1.2e-07 | -4.468 | -5.8 | 5.2e-09 | 0.06 | 0.41 | 0.18 | FALSE |
36 | GTEx | Colon Transverse | NARFL | 0.43 | 0.30 | lasso | 3 | 0.29 | 3.2e-14 | 7.059 | 6.5 | 6.2e-11 | 0.00 | 0.05 | 0.95 | FALSE |
37 | GTEx | Esophagus Gastroesophageal Junction | NARFL | 0.24 | 0.20 | lasso | 2 | 0.16 | 1.9e-06 | 7.059 | 7.0 | 1.8e-12 | 0.00 | 0.05 | 0.92 | FALSE |
38 | GTEx | Esophagus Mucosa | MRPL28 | 0.25 | 0.09 | enet | 17 | 0.20 | 1.8e-13 | -4.468 | -5.7 | 1.4e-08 | 0.03 | 0.40 | 0.60 | FALSE |
39 | GTEx | Esophagus Mucosa | LMF1 | 0.22 | 0.05 | lasso | 3 | 0.11 | 7.0e-08 | 3.818 | 5.6 | 2.3e-08 | 0.01 | 0.44 | 0.51 | FALSE |
40 | GTEx | Esophagus Mucosa | NARFL | 0.18 | 0.13 | lasso | 4 | 0.11 | 1.5e-07 | -6.539 | 6.9 | 5.8e-12 | -0.02 | 0.51 | 0.48 | FALSE |
41 | GTEx | Esophagus Mucosa | RPS2 | 0.36 | 0.17 | enet | 34 | 0.20 | 3.0e-13 | -4.062 | -5.7 | 1.5e-08 | 0.15 | 1.00 | 0.00 | TRUE |
42 | GTEx | Esophagus Mucosa | BRICD5 | 0.17 | 0.06 | enet | 9 | 0.11 | 1.3e-07 | -8.060 | -9.3 | 1.6e-20 | 0.05 | 0.89 | 0.00 | FALSE |
43 | GTEx | Esophagus Muscularis | PIGQ | 0.17 | 0.01 | lasso | 5 | 0.01 | 5.5e-02 | 7.059 | -6.6 | 5.2e-11 | 0.00 | 0.14 | 0.53 | FALSE |
44 | GTEx | Esophagus Muscularis | NARFL | 0.24 | 0.30 | lasso | 3 | 0.26 | 9.3e-16 | 7.059 | 7.1 | 1.2e-12 | 0.00 | 0.05 | 0.95 | FALSE |
45 | GTEx | Heart Atrial Appendage | LMF1 | 0.19 | 0.13 | enet | 5 | 0.12 | 3.8e-06 | 6.611 | 6.5 | 7.4e-11 | 0.07 | 0.04 | 0.95 | FALSE |
46 | GTEx | Heart Atrial Appendage | NARFL | 0.42 | 0.18 | lasso | 3 | 0.15 | 2.1e-07 | 7.059 | 7.0 | 2.1e-12 | 0.00 | 0.05 | 0.94 | FALSE |
47 | GTEx | Heart Left Ventricle | LMF1 | 0.16 | 0.08 | lasso | 3 | 0.10 | 5.2e-06 | 6.611 | 6.9 | 6.6e-12 | 0.05 | 0.03 | 0.97 | FALSE |
48 | GTEx | Heart Left Ventricle | HAGHL | 0.25 | 0.15 | lasso | 4 | 0.12 | 7.7e-07 | 7.022 | 7.0 | 3.6e-12 | -0.05 | 0.08 | 0.92 | FALSE |
49 | GTEx | Lung | LMF1 | 0.16 | 0.11 | lasso | 1 | 0.10 | 3.0e-08 | 5.305 | 5.3 | 1.1e-07 | 0.02 | 0.17 | 0.82 | FALSE |
50 | GTEx | Lung | NARFL | 0.36 | 0.32 | lasso | 7 | 0.31 | 3.4e-24 | 7.059 | 7.0 | 1.7e-12 | 0.00 | 0.05 | 0.95 | FALSE |
51 | GTEx | Lung | WDR90 | 0.05 | 0.03 | lasso | 3 | 0.02 | 1.1e-02 | 6.784 | 6.5 | 8.7e-11 | -0.05 | 0.26 | 0.60 | FALSE |
52 | GTEx | Lung | LA16c-366D3.1 | 0.24 | 0.14 | enet | 12 | 0.13 | 5.0e-10 | 5.756 | 5.2 | 1.7e-07 | 0.06 | 0.98 | 0.02 | FALSE |
53 | GTEx | Muscle Skeletal | LMF1 | 0.10 | 0.10 | lasso | 2 | 0.08 | 3.9e-08 | 7.205 | 7.3 | 2.4e-13 | 0.06 | 0.02 | 0.98 | TRUE |
54 | GTEx | Nerve Tibial | NARFL | 0.44 | 0.35 | lasso | 5 | 0.34 | 2.9e-25 | 7.059 | 7.4 | 1.7e-13 | -0.01 | 0.05 | 0.95 | FALSE |
55 | GTEx | Nerve Tibial | BRICD5 | 0.21 | 0.18 | enet | 21 | 0.18 | 8.8e-13 | 9.654 | -7.8 | 4.0e-15 | -0.02 | 1.00 | 0.00 | FALSE |
56 | GTEx | Nerve Tibial | ARHGDIG | 0.13 | 0.07 | lasso | 2 | 0.07 | 8.0e-06 | -4.575 | 5.2 | 2.1e-07 | -0.07 | 0.25 | 0.06 | FALSE |
57 | GTEx | Ovary | NARFL | 0.51 | 0.44 | lasso | 6 | 0.43 | 9.3e-12 | 7.059 | 6.3 | 2.5e-10 | -0.01 | 0.04 | 0.95 | FALSE |
58 | GTEx | Pancreas | NARFL | 0.24 | 0.21 | lasso | 4 | 0.16 | 3.6e-07 | 7.059 | 7.8 | 6.8e-15 | 0.00 | 0.05 | 0.95 | FALSE |
59 | GTEx | Pancreas | SNORA64 | 0.34 | 0.02 | enet | 20 | 0.01 | 1.2e-01 | -0.445 | 5.7 | 1.2e-08 | -0.36 | 0.10 | 0.18 | FALSE |
60 | GTEx | Pituitary | BRICD5 | 0.22 | 0.15 | lasso | 3 | 0.14 | 2.0e-04 | -7.261 | -8.3 | 1.1e-16 | 0.13 | 0.11 | 0.06 | FALSE |
61 | GTEx | Prostate | LMF1 | 0.31 | 0.06 | lasso | 4 | 0.06 | 1.4e-02 | 7.205 | 7.2 | 5.9e-13 | 0.04 | 0.03 | 0.76 | FALSE |
62 | GTEx | Prostate | NARFL | 0.55 | 0.27 | lasso | 6 | 0.45 | 1.2e-12 | 7.059 | 5.5 | 4.8e-08 | -0.01 | 0.10 | 0.88 | FALSE |
63 | GTEx | Skin Not Sun Exposed Suprapubic | RAB11FIP3 | 0.15 | 0.06 | lasso | 9 | 0.09 | 1.9e-05 | 4.720 | -6.0 | 2.1e-09 | -0.01 | 0.93 | 0.00 | FALSE |
64 | GTEx | Skin Sun Exposed Lower leg | MRPL28 | 0.27 | 0.11 | enet | 18 | 0.24 | 3.8e-20 | -6.601 | -5.7 | 1.1e-08 | 0.01 | 0.28 | 0.72 | FALSE |
65 | GTEx | Skin Sun Exposed Lower leg | RHBDL1 | 0.12 | 0.05 | lasso | 8 | 0.04 | 2.5e-04 | 4.197 | 5.3 | 1.2e-07 | -0.05 | 0.87 | 0.03 | FALSE |
66 | GTEx | Skin Sun Exposed Lower leg | WDR24 | 0.08 | 0.01 | enet | 7 | 0.04 | 2.5e-04 | 4.147 | 6.5 | 8.6e-11 | -0.03 | 0.18 | 0.28 | FALSE |
67 | GTEx | Skin Sun Exposed Lower leg | RNPS1 | 0.10 | 0.01 | lasso | 6 | 0.04 | 6.3e-04 | 2.925 | -5.2 | 1.8e-07 | 0.32 | 0.06 | 0.83 | FALSE |
68 | GTEx | Skin Sun Exposed Lower leg | AC141586.5 | 0.12 | 0.04 | enet | 15 | 0.10 | 5.8e-09 | -4.498 | 6.5 | 5.6e-11 | -0.40 | 0.75 | 0.02 | FALSE |
69 | GTEx | Skin Sun Exposed Lower leg | LA16c-313D11.12 | 0.12 | 0.03 | lasso | 7 | 0.04 | 3.7e-04 | 6.586 | 6.7 | 2.4e-11 | -0.05 | 0.24 | 0.54 | FALSE |
70 | GTEx | Spleen | NARFL | 0.45 | 0.34 | enet | 7 | 0.37 | 2.4e-10 | 6.784 | 7.2 | 4.3e-13 | -0.03 | 0.10 | 0.90 | FALSE |
71 | GTEx | Stomach | NARFL | 0.16 | 0.19 | lasso | 4 | 0.17 | 1.5e-08 | 7.059 | 7.2 | 6.4e-13 | 0.00 | 0.05 | 0.95 | FALSE |
72 | GTEx | Testis | LMF1 | 0.18 | 0.07 | lasso | 2 | 0.03 | 1.1e-02 | 5.305 | 5.2 | 1.8e-07 | 0.02 | 0.03 | 0.83 | FALSE |
73 | GTEx | Testis | NARFL | 0.41 | 0.45 | lasso | 4 | 0.44 | 1.4e-21 | 7.059 | 7.0 | 2.5e-12 | -0.01 | 0.05 | 0.95 | FALSE |
74 | GTEx | Testis | HAGHL | 0.27 | 0.16 | lasso | 7 | 0.16 | 1.0e-07 | 7.022 | -7.0 | 3.0e-12 | 0.04 | 0.08 | 0.91 | FALSE |
75 | GTEx | Testis | BRICD5 | 0.26 | 0.29 | enet | 12 | 0.21 | 1.3e-09 | 7.713 | -8.8 | 2.1e-18 | 0.09 | 1.00 | 0.00 | FALSE |
76 | GTEx | Testis | RP11-161M6.2 | 0.15 | 0.09 | lasso | 2 | 0.10 | 5.3e-05 | 4.698 | -5.3 | 1.1e-07 | -0.07 | 0.07 | 0.82 | FALSE |
77 | GTEx | Thyroid | LMF1 | 0.16 | 0.14 | lasso | 5 | 0.13 | 2.3e-10 | 5.305 | 6.1 | 1.4e-09 | 0.02 | 0.14 | 0.86 | FALSE |
78 | GTEx | Thyroid | NARFL | 0.32 | 0.38 | lasso | 1 | 0.38 | 4.1e-30 | 7.059 | 7.1 | 1.7e-12 | 0.00 | 0.05 | 0.95 | FALSE |
79 | GTEx | Thyroid | MLST8 | 0.10 | 0.06 | lasso | 5 | 0.06 | 2.2e-05 | -8.060 | 7.9 | 3.3e-15 | -0.06 | 0.85 | 0.01 | FALSE |
80 | GTEx | Thyroid | ECI1 | 0.11 | 0.00 | enet | 14 | 0.02 | 2.0e-02 | 8.762 | -8.0 | 1.1e-15 | 0.29 | 0.07 | 0.04 | FALSE |
81 | GTEx | Thyroid | BRICD5 | 0.16 | 0.10 | lasso | 3 | 0.09 | 3.6e-07 | 9.654 | -9.9 | 4.8e-23 | 0.06 | 0.93 | 0.00 | FALSE |
82 | GTEx | Thyroid | Z97634.3 | 0.18 | 0.09 | enet | 24 | 0.09 | 3.9e-07 | 0.238 | -5.3 | 9.3e-08 | 0.04 | 0.84 | 0.06 | FALSE |
83 | GTEx | Uterus | NARFL | 0.41 | 0.34 | lasso | 1 | 0.32 | 2.7e-07 | 7.059 | 7.1 | 1.7e-12 | 0.00 | 0.05 | 0.78 | FALSE |
84 | GTEx | Whole Blood | NARFL | 0.11 | 0.06 | lasso | 3 | 0.06 | 7.4e-06 | 7.059 | 7.1 | 9.7e-13 | -0.02 | 0.06 | 0.94 | FALSE |
85 | GTEx | Whole Blood | RHBDL1 | 0.10 | 0.06 | lasso | 4 | 0.05 | 3.6e-05 | 5.482 | 5.4 | 6.7e-08 | -0.03 | 0.87 | 0.04 | FALSE |
86 | METSIM | Adipose | ADCY9 | 0.07 | 0.02 | bslmm | 409 | 0.04 | 1.0e-06 | 0.959 | 6.2 | 4.4e-10 | -0.03 | 0.90 | 0.07 | FALSE |
87 | METSIM | Adipose | BRICD5 | 0.07 | 0.04 | enet | 19 | 0.04 | 8.5e-07 | 5.664 | -7.9 | 3.4e-15 | 0.04 | 0.99 | 0.00 | FALSE |
88 | METSIM | Adipose | HAGHL | 0.10 | 0.07 | lasso | 2 | 0.06 | 5.6e-10 | 7.022 | 6.5 | 9.1e-11 | -0.05 | 0.08 | 0.92 | FALSE |
89 | METSIM | Adipose | NARFL | 0.13 | 0.14 | bslmm | 454 | 0.14 | 5.5e-20 | 7.159 | 6.3 | 3.5e-10 | 0.00 | 0.04 | 0.96 | TRUE |
90 | METSIM | Adipose | PKD1 | 0.06 | 0.02 | bslmm | 370 | 0.03 | 9.5e-06 | -9.646 | 6.9 | 4.1e-12 | -0.78 | 0.00 | 0.99 | FALSE |
91 | METSIM | Adipose | RNPS1 | 0.12 | 0.06 | blup | 347 | 0.05 | 4.9e-08 | 3.274 | -5.3 | 1.1e-07 | 0.32 | 1.00 | 0.00 | TRUE |
92 | METSIM | Adipose | STUB1 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.9e-05 | 4.450 | 5.3 | 1.4e-07 | -0.05 | 0.94 | 0.00 | FALSE |
93 | METSIM | Adipose | SYNGR3 | 0.11 | 0.03 | bslmm | 418 | 0.06 | 2.0e-09 | 5.726 | 5.9 | 4.4e-09 | -0.11 | 1.00 | 0.00 | TRUE |
94 | NTR | Blood | LOC100508121 | 0.02 | 0.01 | lasso | 2 | 0.01 | 2.7e-04 | 6.399 | 5.4 | 8.1e-08 | -0.06 | 0.10 | 0.59 | TRUE |
95 | ROSMAP | Brain Pre-frontal Cortex | SLC9A3R2 | 0.16 | 0.11 | lasso | 6 | 0.12 | 6.3e-15 | -8.726 | 8.9 | 6.7e-19 | -0.62 | 0.99 | 0.01 | TRUE |
96 | ROSMAP | Brain Pre-frontal Cortex | LMF1 | 0.28 | 0.26 | enet | 31 | 0.33 | 4.3e-43 | 7.035 | 6.5 | 6.3e-11 | 0.07 | 0.06 | 0.94 | FALSE |
97 | ROSMAP | Brain Pre-frontal Cortex | GFER | 0.15 | 0.09 | enet | 21 | 0.12 | 1.2e-14 | 5.828 | -6.2 | 4.3e-10 | 0.20 | 1.00 | 0.00 | FALSE |
98 | ROSMAP | Brain Pre-frontal Cortex | MLST8 | 0.22 | 0.18 | lasso | 6 | 0.18 | 7.1e-23 | 8.766 | 9.6 | 7.9e-22 | -0.49 | 1.00 | 0.00 | FALSE |
99 | ROSMAP | Brain Pre-frontal Cortex | BRICD5 | 0.19 | 0.05 | enet | 36 | 0.06 | 4.5e-08 | 8.532 | -6.3 | 2.8e-10 | 0.23 | 1.00 | 0.00 | FALSE |
100 | ROSMAP | Brain Pre-frontal Cortex | NOXO1 | 0.18 | 0.05 | blup | 412 | 0.10 | 6.6e-13 | 5.828 | -8.8 | 2.0e-18 | 0.34 | 1.00 | 0.00 | FALSE |
101 | ROSMAP | Brain Pre-frontal Cortex | RP11-161M6.2 | 0.39 | 0.38 | lasso | 5 | 0.43 | 1.4e-60 | 5.754 | -5.6 | 1.7e-08 | -0.08 | 1.00 | 0.00 | FALSE |
102 | ROSMAP | Brain Pre-frontal Cortex | RP11-462G12.1 | 0.11 | 0.07 | enet | 18 | 0.06 | 1.1e-08 | -9.878 | -8.6 | 7.4e-18 | 0.02 | 0.00 | 1.00 | TRUE |
103 | YFS | Blood | FAM173A | 0.12 | 0.07 | lasso | 6 | 0.10 | 2.0e-29 | 7.022 | 7.6 | 3.0e-14 | -0.03 | 0.08 | 0.92 | FALSE |
104 | YFS | Blood | METRN | 0.05 | 0.06 | lasso | 2 | 0.06 | 2.0e-18 | 7.022 | 7.3 | 3.4e-13 | -0.04 | 0.05 | 0.95 | FALSE |
105 | YFS | Blood | MLST8 | 0.12 | 0.06 | bslmm | 326 | 0.06 | 4.3e-20 | -8.060 | 10.4 | 3.1e-25 | -0.38 | 1.00 | 0.00 | FALSE |
106 | YFS | Blood | NARFL | 0.16 | 0.19 | lasso | 3 | 0.19 | 1.1e-60 | 7.159 | 7.4 | 1.5e-13 | -0.01 | 0.02 | 0.98 | FALSE |
107 | YFS | Blood | PGP | 0.17 | 0.14 | lasso | 3 | 0.14 | 9.2e-42 | -8.424 | -8.5 | 2.0e-17 | 0.09 | 1.00 | 0.00 | TRUE |
108 | YFS | Blood | WDR24 | 0.02 | 0.01 | bslmm | 408 | 0.00 | 8.8e-03 | 4.225 | 5.6 | 2.3e-08 | -0.01 | 0.47 | 0.03 | FALSE |
109 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | FAM173A | 0.04 | 0.03 | enet | 5 | 0.02 | 9.2e-03 | -5.559 | 5.5 | 3.6e-08 | 0.04 | 0.02 | 0.58 | FALSE |
110 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FAM173A | 0.02 | 0.03 | enet | 4 | 0.02 | 6.5e-05 | -6.539 | 7.2 | 8.8e-13 | -0.03 | 0.08 | 0.86 | FALSE |
111 | The Cancer Genome Atlas | Breast Invasive Carcinoma | METRN | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.0e-04 | 7.022 | 7.0 | 2.2e-12 | -0.05 | 0.00 | 0.97 | FALSE |
112 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RHOT2 | 0.01 | 0.01 | blup | 51 | 0.01 | 1.5e-02 | 5.392 | -5.6 | 2.2e-08 | 0.02 | 0.13 | 0.24 | TRUE |
113 | The Cancer Genome Atlas | Colon Adenocarcinoma | FAM173A | 0.13 | 0.12 | lasso | 5 | 0.13 | 6.6e-08 | 5.827 | 7.0 | 2.1e-12 | -0.06 | 0.02 | 0.98 | FALSE |
114 | The Cancer Genome Atlas | Colon Adenocarcinoma | HAGHL | 0.05 | 0.02 | blup | 42 | 0.04 | 3.1e-03 | 3.997 | 7.4 | 1.1e-13 | -0.04 | 0.02 | 0.62 | TRUE |
115 | The Cancer Genome Atlas | Colon Adenocarcinoma | LMF1 | 0.10 | 0.02 | blup | 99 | 0.03 | 6.1e-03 | 4.702 | 6.1 | 8.4e-10 | 0.02 | 0.02 | 0.88 | FALSE |
116 | The Cancer Genome Atlas | Colon Adenocarcinoma | METRN | 0.05 | 0.03 | blup | 52 | 0.04 | 2.2e-03 | 5.827 | 7.2 | 4.5e-13 | -0.04 | 0.01 | 0.77 | FALSE |
117 | The Cancer Genome Atlas | Colon Adenocarcinoma | MLST8 | 0.27 | 0.09 | blup | 37 | 0.08 | 1.4e-05 | -0.475 | -5.3 | 1.4e-07 | 0.45 | 0.24 | 0.07 | FALSE |
118 | The Cancer Genome Atlas | Colon Adenocarcinoma | MRPL28 | 0.14 | 0.02 | lasso | 2 | 0.05 | 8.3e-04 | -6.493 | -6.3 | 3.4e-10 | 0.01 | 0.00 | 0.98 | TRUE |
119 | The Cancer Genome Atlas | Colon Adenocarcinoma | UBN1 | 0.05 | 0.04 | enet | 7 | 0.05 | 4.2e-04 | -6.556 | 6.1 | 1.3e-09 | 0.00 | 0.06 | 0.24 | FALSE |
120 | The Cancer Genome Atlas | Glioblastoma Multiforme | MLST8 | 0.17 | 0.04 | enet | 7 | 0.01 | 1.3e-01 | -8.439 | 6.3 | 3.3e-10 | -0.02 | 0.01 | 0.09 | TRUE |
121 | The Cancer Genome Atlas | Glioblastoma Multiforme | RNPS1 | 0.10 | 0.01 | lasso | 2 | 0.02 | 6.7e-02 | 3.274 | -5.8 | 7.0e-09 | 0.16 | 0.02 | 0.05 | FALSE |
122 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LMF1 | 0.12 | 0.06 | lasso | 4 | 0.08 | 1.8e-09 | 5.305 | 6.1 | 8.7e-10 | 0.02 | 0.08 | 0.92 | FALSE |
123 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RPS2 | 0.03 | 0.00 | blup | 59 | 0.01 | 8.0e-02 | -2.662 | -6.2 | 6.5e-10 | 0.15 | 0.01 | 0.63 | TRUE |
124 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZNF500 | 0.11 | 0.01 | blup | 49 | 0.03 | 8.8e-05 | -4.491 | 6.5 | 5.6e-11 | 0.00 | 0.00 | 0.29 | TRUE |
125 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | HAGHL | 0.03 | 0.04 | enet | 7 | 0.04 | 6.6e-05 | 6.784 | 5.7 | 9.4e-09 | -0.04 | 0.01 | 0.97 | TRUE |
126 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MLST8 | 0.04 | 0.04 | lasso | 3 | 0.03 | 7.6e-05 | 8.165 | 8.3 | 1.2e-16 | -0.11 | 0.26 | 0.36 | FALSE |
127 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ROGDI | 0.03 | 0.04 | lasso | 3 | 0.03 | 1.6e-04 | 5.216 | -5.1 | 2.7e-07 | 0.03 | 0.05 | 0.88 | FALSE |
128 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MLST8 | 0.11 | 0.08 | enet | 5 | 0.11 | 1.0e-06 | -8.060 | 7.4 | 1.5e-13 | -0.16 | 0.11 | 0.77 | FALSE |
129 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CASKIN1 | 0.02 | 0.00 | blup | 38 | 0.01 | 4.5e-02 | 8.569 | -10.1 | 6.7e-24 | 0.46 | 0.03 | 0.04 | FALSE |
130 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LMF1 | 0.15 | 0.19 | lasso | 8 | 0.19 | 2.8e-21 | 5.756 | 6.4 | 1.4e-10 | 0.08 | 0.49 | 0.51 | FALSE |
131 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LOC100134368 | 0.03 | 0.00 | enet | 5 | 0.01 | 2.8e-02 | -6.601 | -6.2 | 5.2e-10 | 0.03 | 0.01 | 0.75 | FALSE |
132 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MLST8 | 0.07 | 0.07 | enet | 6 | 0.08 | 1.2e-09 | -8.060 | 9.3 | 9.3e-21 | -0.25 | 0.02 | 0.98 | FALSE |
133 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NARFL | 0.06 | 0.05 | blup | 48 | 0.06 | 2.0e-07 | 7.022 | 5.5 | 3.2e-08 | -0.03 | 0.00 | 1.00 | FALSE |
134 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PGP | 0.05 | 0.01 | enet | 11 | 0.03 | 1.5e-04 | 8.165 | -7.0 | 3.6e-12 | -0.06 | 0.00 | 0.83 | FALSE |
135 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ROGDI | 0.05 | 0.02 | lasso | 2 | 0.03 | 6.0e-04 | -4.491 | -5.5 | 3.5e-08 | 0.02 | 0.06 | 0.07 | FALSE |
136 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MLST8 | 0.10 | 0.02 | blup | 37 | 0.06 | 7.3e-04 | -8.566 | 8.6 | 7.1e-18 | -0.25 | 0.02 | 0.44 | FALSE |
137 | The Cancer Genome Atlas | Lung Adenocarcinoma | LOC100134368 | 0.05 | 0.00 | enet | 12 | 0.03 | 2.5e-04 | 3.271 | -6.0 | 2.4e-09 | 0.02 | 0.01 | 0.10 | FALSE |
138 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | FAM173A | 0.04 | 0.04 | lasso | 2 | 0.04 | 2.6e-05 | 5.785 | 5.8 | 7.4e-09 | -0.03 | 0.28 | 0.49 | FALSE |
139 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | HAGHL | 0.02 | 0.00 | blup | 42 | 0.01 | 7.0e-03 | 7.159 | 7.0 | 2.5e-12 | -0.04 | 0.01 | 0.93 | FALSE |
140 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SYNGR3 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.9e-04 | 5.828 | 5.9 | 4.3e-09 | -0.21 | 0.57 | 0.02 | TRUE |
141 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | FAM173A | 0.08 | 0.06 | blup | 43 | 0.05 | 1.5e-04 | 6.399 | 5.9 | 2.9e-09 | -0.06 | 0.04 | 0.84 | FALSE |
142 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | STUB1 | 0.04 | 0.04 | blup | 47 | 0.04 | 1.8e-03 | 3.997 | 5.7 | 1.1e-08 | -0.05 | 0.05 | 0.69 | TRUE |
143 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | WDR24 | 0.06 | 0.05 | blup | 52 | 0.06 | 5.7e-05 | 4.085 | 5.4 | 6.6e-08 | -0.04 | 0.12 | 0.66 | FALSE |
144 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | MLST8 | 0.09 | 0.05 | blup | 38 | 0.04 | 8.7e-03 | -8.439 | 7.8 | 4.6e-15 | 0.00 | 0.05 | 0.54 | FALSE |
145 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | FAM173A | 0.11 | 0.12 | lasso | 1 | 0.10 | 6.9e-05 | -6.539 | 6.5 | 6.2e-11 | -0.01 | 0.11 | 0.41 | FALSE |
146 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LMF1 | 0.11 | 0.10 | lasso | 5 | 0.09 | 2.0e-04 | 6.560 | 6.7 | 2.1e-11 | 0.02 | 0.02 | 0.94 | FALSE |
147 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C16orf79 | 0.05 | 0.01 | lasso | 4 | 0.02 | 1.5e-03 | 8.569 | -10.7 | 8.8e-27 | 0.24 | 0.01 | 0.91 | TRUE |
148 | The Cancer Genome Atlas | Prostate Adenocarcinoma | JMJD8 | 0.04 | 0.03 | blup | 50 | 0.03 | 5.0e-04 | 6.399 | -5.1 | 3.0e-07 | 0.07 | 0.14 | 0.18 | FALSE |
149 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LMF1 | 0.12 | 0.07 | lasso | 3 | 0.06 | 1.5e-06 | 5.305 | 5.7 | 1.5e-08 | 0.02 | 0.82 | 0.14 | FALSE |
150 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC100134368 | 0.05 | 0.00 | blup | 48 | 0.04 | 2.5e-05 | -3.301 | -5.3 | 1.3e-07 | 0.04 | 0.07 | 0.45 | FALSE |
151 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NDUFB10 | 0.04 | 0.00 | blup | 59 | 0.01 | 1.6e-02 | -3.685 | 5.1 | 2.9e-07 | -0.16 | 0.03 | 0.29 | FALSE |
152 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PGP | 0.04 | 0.03 | lasso | 5 | 0.02 | 1.3e-03 | -7.261 | -8.4 | 4.5e-17 | 0.06 | 0.08 | 0.82 | FALSE |
153 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DNASE1L2 | 0.26 | 0.11 | enet | 13 | 0.10 | 2.5e-04 | -7.261 | -5.3 | 1.4e-07 | 0.04 | 0.03 | 0.08 | FALSE |
154 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | LMF1 | 0.14 | 0.04 | blup | 98 | 0.03 | 2.8e-02 | 4.702 | 5.3 | 1.2e-07 | 0.01 | 0.02 | 0.58 | FALSE |
155 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SYNGR3 | 0.12 | 0.11 | lasso | 4 | 0.08 | 7.7e-04 | 5.757 | 5.8 | 8.6e-09 | -0.20 | 0.08 | 0.08 | FALSE |
156 | The Cancer Genome Atlas | Thyroid Carcinoma | CASKIN1 | 0.06 | 0.02 | blup | 38 | 0.04 | 1.5e-04 | -10.872 | -7.3 | 2.3e-13 | 0.81 | 0.00 | 0.97 | FALSE |
157 | The Cancer Genome Atlas | Thyroid Carcinoma | HAGHL | 0.07 | 0.04 | blup | 42 | 0.04 | 4.2e-05 | 7.059 | 5.5 | 4.8e-08 | -0.03 | 0.00 | 0.99 | FALSE |
158 | The Cancer Genome Atlas | Thyroid Carcinoma | LMF1 | 0.15 | 0.09 | lasso | 6 | 0.11 | 5.9e-11 | 5.305 | 6.3 | 2.1e-10 | 0.02 | 0.09 | 0.91 | FALSE |
159 | The Cancer Genome Atlas | Thyroid Carcinoma | MLST8 | 0.09 | 0.07 | enet | 8 | 0.09 | 9.9e-09 | 8.532 | 9.0 | 2.2e-19 | -0.30 | 0.01 | 0.99 | FALSE |
160 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC9A3R2 | 0.06 | 0.03 | lasso | 5 | 0.03 | 3.7e-04 | -7.417 | 8.5 | 2.8e-17 | -0.60 | 0.07 | 0.71 | FALSE |