Best TWAS P=2.02e-28 · Best GWAS P=2.25e-27 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FAM173A | 0.06 | 0.05 | enet | 11 | 0.04 | 1.9e-05 | 5.54 | 8.0 | 1.0e-15 | 0.06 | 0.18 | 0.73 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | GLYR1 | 0.14 | 0.03 | bslmm | 416 | 0.07 | 3.8e-09 | 1.13 | -5.8 | 5.8e-09 | -0.04 | 0.56 | 0.37 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | SLC9A3R2 | 0.15 | 0.09 | enet | 7 | 0.10 | 7.8e-12 | -6.93 | 6.5 | 7.5e-11 | -0.02 | 1.00 | 0.00 | FALSE |
4 | GTEx | Adipose Subcutaneous | NARFL | 0.23 | 0.25 | enet | 13 | 0.25 | 2.2e-20 | 8.15 | 8.3 | 1.3e-16 | 0.02 | 0.00 | 1.00 | FALSE |
5 | GTEx | Adipose Subcutaneous | HAGHL | 0.16 | 0.04 | lasso | 7 | 0.02 | 1.3e-02 | 8.31 | 6.4 | 1.2e-10 | 0.00 | 0.00 | 0.98 | FALSE |
6 | GTEx | Adipose Visceral Omentum | NARFL | 0.20 | 0.30 | lasso | 2 | 0.29 | 2.6e-15 | 8.15 | 8.2 | 2.0e-16 | 0.00 | 0.00 | 1.00 | FALSE |
7 | GTEx | Adipose Visceral Omentum | BRICD5 | 0.12 | 0.01 | lasso | 4 | 0.03 | 8.7e-03 | -7.86 | -9.9 | 5.5e-23 | 0.01 | 0.12 | 0.05 | FALSE |
8 | GTEx | Adrenal Gland | Z97634.3 | 0.30 | 0.01 | enet | 28 | 0.05 | 8.6e-03 | -0.24 | -5.2 | 2.3e-07 | -0.02 | 0.04 | 0.10 | TRUE |
9 | GTEx | Artery Aorta | MRPL28 | 0.22 | 0.04 | enet | 6 | 0.08 | 2.8e-05 | -4.38 | -5.2 | 2.4e-07 | 0.05 | 0.14 | 0.04 | TRUE |
10 | GTEx | Artery Aorta | LMF1 | 0.22 | 0.06 | enet | 37 | 0.04 | 4.7e-03 | 3.18 | 5.7 | 1.4e-08 | 0.02 | 0.30 | 0.03 | FALSE |
11 | GTEx | Artery Aorta | NARFL | 0.41 | 0.36 | lasso | 7 | 0.35 | 4.6e-20 | 8.15 | 8.3 | 1.3e-16 | -0.01 | 0.00 | 1.00 | FALSE |
12 | GTEx | Artery Aorta | RHBDL1 | 0.14 | 0.07 | enet | 13 | 0.11 | 1.4e-06 | 5.68 | 5.9 | 3.3e-09 | 0.06 | 0.95 | 0.02 | FALSE |
13 | GTEx | Artery Aorta | ARHGDIG | 0.30 | 0.00 | lasso | 11 | 0.05 | 1.4e-03 | 0.66 | 5.9 | 2.8e-09 | 0.00 | 0.10 | 0.04 | FALSE |
14 | GTEx | Artery Aorta | LA16c-349E10.1 | 0.20 | 0.13 | lasso | 10 | 0.13 | 1.8e-07 | 4.63 | 5.2 | 2.6e-07 | 0.05 | 0.92 | 0.05 | FALSE |
15 | GTEx | Artery Coronary | NARFL | 0.26 | 0.16 | lasso | 6 | 0.05 | 1.1e-02 | 8.15 | 8.4 | 5.7e-17 | -0.02 | 0.01 | 0.97 | FALSE |
16 | GTEx | Artery Tibial | NARFL | 0.14 | 0.16 | lasso | 2 | 0.15 | 1.2e-11 | 8.15 | 8.2 | 2.6e-16 | -0.01 | 0.00 | 1.00 | FALSE |
17 | GTEx | Artery Tibial | C16orf13 | 0.22 | 0.16 | enet | 23 | 0.19 | 1.0e-14 | 4.95 | 5.7 | 9.4e-09 | 0.03 | 1.00 | 0.00 | FALSE |
18 | GTEx | Artery Tibial | BRICD5 | 0.28 | 0.21 | lasso | 3 | 0.27 | 1.8e-21 | 9.91 | -8.6 | 9.8e-18 | 0.00 | 0.50 | 0.50 | FALSE |
19 | GTEx | Brain Cerebellar Hemisphere | ZNF500 | 0.27 | 0.13 | enet | 13 | 0.12 | 4.4e-04 | 2.47 | 6.4 | 1.8e-10 | 0.00 | 0.06 | 0.84 | TRUE |
20 | GTEx | Brain Cerebellar Hemisphere | LMF1 | 0.37 | 0.16 | enet | 26 | 0.26 | 1.7e-07 | 4.08 | -6.3 | 2.5e-10 | -0.02 | 0.88 | 0.01 | FALSE |
21 | GTEx | Brain Cerebellar Hemisphere | CCDC78 | 0.21 | 0.12 | enet | 12 | 0.12 | 6.2e-04 | -6.39 | -9.1 | 6.5e-20 | -0.04 | 0.06 | 0.76 | TRUE |
22 | GTEx | Brain Cerebellar Hemisphere | LA16c-366D3.1 | 0.45 | 0.02 | lasso | 9 | 0.12 | 5.9e-04 | 4.39 | -6.5 | 9.2e-11 | -0.02 | 0.09 | 0.08 | FALSE |
23 | GTEx | Brain Cerebellar Hemisphere | LA16c-349E10.1 | 0.34 | 0.13 | lasso | 10 | 0.21 | 4.7e-06 | 5.68 | -5.3 | 9.9e-08 | -0.08 | 0.42 | 0.04 | FALSE |
24 | GTEx | Brain Cerebellum | LMF1 | 0.17 | 0.10 | enet | 16 | 0.14 | 7.5e-05 | 6.37 | -6.4 | 1.7e-10 | -0.01 | 0.57 | 0.04 | FALSE |
25 | GTEx | Brain Cerebellum | NARFL | 0.23 | 0.27 | lasso | 2 | 0.24 | 1.3e-07 | 8.15 | 8.2 | 2.7e-16 | 0.00 | 0.00 | 0.99 | FALSE |
26 | GTEx | Brain Cerebellum | LA16c-349E10.1 | 0.18 | 0.21 | lasso | 6 | 0.19 | 3.4e-06 | 5.68 | -5.7 | 1.1e-08 | -0.06 | 0.57 | 0.05 | TRUE |
27 | GTEx | Brain Cortex | LMF1 | 0.33 | 0.12 | lasso | 4 | 0.12 | 2.9e-04 | 5.27 | 5.3 | 1.2e-07 | 0.03 | 0.40 | 0.04 | FALSE |
28 | GTEx | Brain Frontal Cortex BA9 | MIR940 | 0.36 | 0.17 | lasso | 4 | 0.11 | 6.3e-04 | 3.93 | 5.2 | 1.9e-07 | 0.04 | 0.13 | 0.06 | FALSE |
29 | GTEx | Brain Hypothalamus | NARFL | 0.23 | 0.12 | lasso | 4 | 0.12 | 1.1e-03 | 4.60 | 7.3 | 3.6e-13 | 0.04 | 0.05 | 0.51 | FALSE |
30 | GTEx | Brain Putamen basal ganglia | ROGDI | 0.41 | 0.38 | lasso | 7 | 0.30 | 7.9e-08 | 5.11 | -5.3 | 1.4e-07 | -0.06 | 0.67 | 0.16 | FALSE |
31 | GTEx | Breast Mammary Tissue | RHBDL1 | 0.13 | 0.01 | enet | 16 | 0.07 | 1.8e-04 | -0.80 | 5.2 | 1.9e-07 | 0.08 | 0.18 | 0.05 | FALSE |
32 | GTEx | Breast Mammary Tissue | UBN1 | 0.21 | 0.05 | enet | 29 | 0.09 | 1.9e-05 | 2.20 | -5.1 | 3.0e-07 | -0.01 | 0.35 | 0.03 | FALSE |
33 | GTEx | Breast Mammary Tissue | BRICD5 | 0.16 | 0.08 | lasso | 5 | 0.02 | 3.4e-02 | 8.77 | -9.4 | 4.0e-21 | 0.01 | 0.52 | 0.10 | FALSE |
34 | GTEx | Breast Mammary Tissue (Male) | WDR90 | 0.24 | 0.09 | lasso | 3 | 0.04 | 5.3e-02 | 4.71 | 5.1 | 2.7e-07 | 0.04 | 0.04 | 0.15 | FALSE |
35 | GTEx | Breast Mammary Tissue (Female) | BRICD5 | 0.06 | 0.00 | enet | 4 | 0.03 | 3.5e-02 | 9.91 | -7.6 | 3.1e-14 | -0.03 | 0.03 | 0.06 | FALSE |
36 | GTEx | Cells EBV-transformed lymphocytes | LMF1 | 0.22 | 0.16 | enet | 11 | 0.24 | 2.2e-08 | 3.18 | 5.4 | 5.5e-08 | 0.00 | 0.62 | 0.02 | FALSE |
37 | GTEx | Cells Transformed fibroblasts | RHBDL1 | 0.22 | 0.10 | lasso | 7 | 0.07 | 2.9e-06 | 5.89 | 5.6 | 1.7e-08 | 0.05 | 0.98 | 0.01 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | LA16c-366D3.1 | 0.09 | 0.02 | lasso | 5 | 0.05 | 2.3e-04 | 6.35 | -5.7 | 1.2e-08 | 0.02 | 0.38 | 0.02 | FALSE |
39 | GTEx | Colon Sigmoid | NARFL | 0.40 | 0.40 | lasso | 2 | 0.33 | 1.9e-12 | 8.15 | 8.2 | 3.2e-16 | -0.01 | 0.00 | 1.00 | FALSE |
40 | GTEx | Colon Transverse | MRPL28 | 0.24 | 0.14 | lasso | 5 | 0.15 | 1.2e-07 | -4.38 | -6.1 | 9.2e-10 | 0.05 | 0.49 | 0.03 | FALSE |
41 | GTEx | Colon Transverse | NARFL | 0.43 | 0.30 | lasso | 3 | 0.29 | 3.2e-14 | 8.15 | 7.8 | 7.6e-15 | -0.01 | 0.00 | 1.00 | FALSE |
42 | GTEx | Colon Transverse | C16orf13 | 0.18 | 0.16 | lasso | 5 | 0.16 | 5.0e-08 | 4.60 | 5.4 | 7.4e-08 | 0.05 | 0.93 | 0.05 | FALSE |
43 | GTEx | Esophagus Gastroesophageal Junction | NARFL | 0.24 | 0.20 | lasso | 2 | 0.16 | 1.9e-06 | 8.15 | 8.1 | 3.9e-16 | -0.01 | 0.01 | 0.99 | FALSE |
44 | GTEx | Esophagus Gastroesophageal Junction | C16orf13 | 0.33 | 0.19 | lasso | 4 | 0.14 | 8.5e-06 | 4.63 | 5.7 | 1.3e-08 | 0.03 | 0.30 | 0.67 | FALSE |
45 | GTEx | Esophagus Mucosa | MRPL28 | 0.25 | 0.09 | enet | 17 | 0.20 | 1.8e-13 | -4.38 | -5.7 | 1.2e-08 | 0.02 | 1.00 | 0.00 | FALSE |
46 | GTEx | Esophagus Mucosa | NARFL | 0.18 | 0.13 | lasso | 4 | 0.11 | 1.5e-07 | -6.39 | 7.1 | 1.0e-12 | 0.05 | 0.25 | 0.75 | TRUE |
47 | GTEx | Esophagus Mucosa | RPS2 | 0.36 | 0.17 | enet | 34 | 0.20 | 3.0e-13 | -3.67 | -5.2 | 2.3e-07 | 0.01 | 1.00 | 0.00 | TRUE |
48 | GTEx | Esophagus Mucosa | BRICD5 | 0.17 | 0.06 | enet | 9 | 0.11 | 1.3e-07 | -8.65 | -10.1 | 7.8e-24 | -0.06 | 0.85 | 0.05 | FALSE |
49 | GTEx | Esophagus Muscularis | PIGQ | 0.17 | 0.01 | lasso | 5 | 0.01 | 5.5e-02 | 8.15 | -7.3 | 3.1e-13 | -0.03 | 0.04 | 0.88 | FALSE |
50 | GTEx | Esophagus Muscularis | NARFL | 0.24 | 0.30 | lasso | 3 | 0.26 | 9.3e-16 | 8.15 | 8.2 | 2.5e-16 | 0.00 | 0.00 | 1.00 | FALSE |
51 | GTEx | Esophagus Muscularis | UBN1 | 0.18 | 0.19 | lasso | 4 | 0.19 | 9.1e-12 | 5.39 | -5.3 | 1.3e-07 | -0.04 | 1.00 | 0.00 | FALSE |
52 | GTEx | Heart Atrial Appendage | LMF1 | 0.19 | 0.13 | enet | 5 | 0.12 | 3.8e-06 | 5.69 | 5.6 | 1.7e-08 | 0.00 | 0.85 | 0.01 | FALSE |
53 | GTEx | Heart Atrial Appendage | NARFL | 0.42 | 0.18 | lasso | 3 | 0.15 | 2.1e-07 | 8.15 | 7.8 | 4.1e-15 | 0.02 | 0.01 | 0.99 | FALSE |
54 | GTEx | Heart Atrial Appendage | NUDT16L1 | 0.12 | 0.17 | lasso | 1 | 0.17 | 4.8e-08 | 5.15 | -5.2 | 2.6e-07 | -0.02 | 0.86 | 0.03 | FALSE |
55 | GTEx | Heart Left Ventricle | LMF1 | 0.16 | 0.08 | lasso | 3 | 0.10 | 5.2e-06 | 5.69 | 6.0 | 2.3e-09 | -0.01 | 0.97 | 0.00 | FALSE |
56 | GTEx | Heart Left Ventricle | HAGHL | 0.25 | 0.15 | lasso | 4 | 0.12 | 7.7e-07 | 8.02 | 8.0 | 1.7e-15 | 0.01 | 0.02 | 0.98 | FALSE |
57 | GTEx | Lung | NARFL | 0.36 | 0.32 | lasso | 7 | 0.31 | 3.4e-24 | 8.15 | 8.2 | 2.9e-16 | -0.01 | 0.00 | 1.00 | FALSE |
58 | GTEx | Lung | WDR24 | 0.09 | 0.00 | enet | 10 | 0.02 | 1.9e-02 | -5.34 | 5.7 | 1.6e-08 | 0.05 | 0.03 | 0.87 | FALSE |
59 | GTEx | Lung | WDR90 | 0.05 | 0.03 | lasso | 3 | 0.02 | 1.1e-02 | 7.80 | 7.4 | 1.1e-13 | 0.02 | 0.10 | 0.84 | FALSE |
60 | GTEx | Muscle Skeletal | ZNF500 | 0.06 | 0.00 | enet | 15 | 0.00 | 2.8e-01 | 2.47 | 5.5 | 2.8e-08 | 0.05 | 0.05 | 0.28 | FALSE |
61 | GTEx | Muscle Skeletal | LMF1 | 0.10 | 0.10 | lasso | 2 | 0.08 | 3.9e-08 | 6.35 | 6.5 | 8.9e-11 | 0.00 | 1.00 | 0.00 | TRUE |
62 | GTEx | Muscle Skeletal | RHBDL1 | 0.09 | 0.00 | lasso | 7 | 0.00 | 3.2e-01 | 5.65 | 5.4 | 8.1e-08 | 0.07 | 0.44 | 0.05 | FALSE |
63 | GTEx | Nerve Tibial | NARFL | 0.44 | 0.35 | lasso | 5 | 0.34 | 2.9e-25 | 8.15 | 8.4 | 4.1e-17 | 0.00 | 0.00 | 1.00 | FALSE |
64 | GTEx | Nerve Tibial | RHBDL1 | 0.18 | 0.09 | lasso | 9 | 0.13 | 1.4e-09 | 3.47 | 5.2 | 1.8e-07 | 0.06 | 1.00 | 0.00 | FALSE |
65 | GTEx | Nerve Tibial | UBN1 | 0.14 | 0.12 | lasso | 4 | 0.11 | 5.6e-08 | 5.41 | -5.3 | 9.2e-08 | -0.04 | 0.99 | 0.00 | FALSE |
66 | GTEx | Nerve Tibial | BRICD5 | 0.21 | 0.18 | enet | 21 | 0.18 | 8.8e-13 | 9.91 | -8.4 | 3.1e-17 | -0.03 | 0.48 | 0.52 | FALSE |
67 | GTEx | Nerve Tibial | ARHGDIG | 0.13 | 0.07 | lasso | 2 | 0.07 | 8.0e-06 | -4.59 | 5.2 | 2.1e-07 | 0.00 | 0.25 | 0.04 | FALSE |
68 | GTEx | Ovary | NARFL | 0.51 | 0.44 | lasso | 6 | 0.43 | 9.3e-12 | 8.15 | 7.4 | 1.1e-13 | 0.00 | 0.00 | 1.00 | FALSE |
69 | GTEx | Pancreas | NARFL | 0.24 | 0.21 | lasso | 4 | 0.16 | 3.6e-07 | 8.15 | 8.7 | 2.6e-18 | 0.01 | 0.01 | 0.99 | TRUE |
70 | GTEx | Pituitary | NMRAL1 | 0.31 | 0.18 | enet | 12 | 0.23 | 1.9e-06 | -3.55 | -5.2 | 1.9e-07 | 0.01 | 0.70 | 0.02 | FALSE |
71 | GTEx | Pituitary | BRICD5 | 0.22 | 0.15 | lasso | 3 | 0.14 | 2.0e-04 | -7.86 | -8.7 | 3.0e-18 | -0.03 | 0.11 | 0.06 | FALSE |
72 | GTEx | Prostate | LMF1 | 0.31 | 0.06 | lasso | 4 | 0.06 | 1.4e-02 | 6.35 | 6.3 | 3.2e-10 | 0.00 | 0.10 | 0.08 | FALSE |
73 | GTEx | Prostate | NARFL | 0.55 | 0.27 | lasso | 6 | 0.45 | 1.2e-12 | 8.15 | 6.8 | 9.3e-12 | 0.00 | 0.01 | 0.98 | FALSE |
74 | GTEx | Skin Not Sun Exposed Suprapubic | RAB11FIP3 | 0.15 | 0.06 | lasso | 9 | 0.09 | 1.9e-05 | 4.83 | -6.2 | 7.1e-10 | -0.03 | 0.93 | 0.00 | FALSE |
75 | GTEx | Skin Sun Exposed Lower leg | MRPL28 | 0.27 | 0.11 | enet | 18 | 0.24 | 3.8e-20 | -6.79 | -6.0 | 2.2e-09 | 0.04 | 1.00 | 0.00 | FALSE |
76 | GTEx | Skin Sun Exposed Lower leg | RHBDL1 | 0.12 | 0.05 | lasso | 8 | 0.04 | 2.5e-04 | 4.90 | 5.8 | 9.1e-09 | 0.06 | 0.77 | 0.14 | FALSE |
77 | GTEx | Skin Sun Exposed Lower leg | WDR24 | 0.08 | 0.01 | enet | 7 | 0.04 | 2.5e-04 | 4.57 | 7.1 | 1.2e-12 | 0.05 | 0.09 | 0.66 | FALSE |
78 | GTEx | Skin Sun Exposed Lower leg | RNPS1 | 0.10 | 0.01 | lasso | 6 | 0.04 | 6.3e-04 | 3.93 | -5.6 | 2.5e-08 | 0.00 | 0.06 | 0.83 | FALSE |
79 | GTEx | Skin Sun Exposed Lower leg | AC141586.5 | 0.12 | 0.04 | enet | 15 | 0.10 | 5.8e-09 | -4.14 | 6.5 | 8.6e-11 | -0.08 | 0.75 | 0.02 | FALSE |
80 | GTEx | Skin Sun Exposed Lower leg | LA16c-313D11.12 | 0.12 | 0.03 | lasso | 7 | 0.04 | 3.7e-04 | 7.59 | 7.2 | 5.2e-13 | 0.03 | 0.09 | 0.84 | FALSE |
81 | GTEx | Spleen | NARFL | 0.45 | 0.34 | enet | 7 | 0.37 | 2.4e-10 | 7.80 | 8.4 | 6.3e-17 | 0.01 | 0.02 | 0.98 | FALSE |
82 | GTEx | Stomach | NARFL | 0.16 | 0.19 | lasso | 4 | 0.17 | 1.5e-08 | 8.15 | 8.3 | 9.4e-17 | 0.00 | 0.00 | 0.99 | FALSE |
83 | GTEx | Testis | ROGDI | 0.17 | 0.09 | enet | 10 | 0.10 | 2.1e-05 | 5.32 | -5.2 | 2.2e-07 | 0.01 | 0.37 | 0.16 | FALSE |
84 | GTEx | Testis | NARFL | 0.41 | 0.45 | lasso | 4 | 0.44 | 1.4e-21 | 8.15 | 8.0 | 9.4e-16 | 0.00 | 0.00 | 1.00 | FALSE |
85 | GTEx | Testis | HAGHL | 0.27 | 0.16 | lasso | 7 | 0.16 | 1.0e-07 | 8.02 | -8.0 | 9.2e-16 | 0.00 | 0.02 | 0.98 | FALSE |
86 | GTEx | Testis | RHBDL1 | 0.25 | 0.19 | lasso | 4 | 0.17 | 3.5e-08 | 4.63 | 5.2 | 2.2e-07 | 0.05 | 0.96 | 0.02 | FALSE |
87 | GTEx | Testis | BRICD5 | 0.26 | 0.29 | enet | 12 | 0.21 | 1.3e-09 | 8.32 | -9.2 | 2.6e-20 | -0.05 | 1.00 | 0.00 | FALSE |
88 | GTEx | Thyroid | LMF1 | 0.16 | 0.14 | lasso | 5 | 0.13 | 2.3e-10 | 4.66 | 5.3 | 1.2e-07 | -0.01 | 1.00 | 0.00 | FALSE |
89 | GTEx | Thyroid | NARFL | 0.32 | 0.38 | lasso | 1 | 0.38 | 4.1e-30 | 8.15 | 8.2 | 3.5e-16 | -0.01 | 0.00 | 1.00 | FALSE |
90 | GTEx | Thyroid | RHBDL1 | 0.12 | 0.10 | lasso | 11 | 0.12 | 2.9e-09 | 4.95 | 5.2 | 2.6e-07 | 0.05 | 1.00 | 0.00 | FALSE |
91 | GTEx | Thyroid | MLST8 | 0.10 | 0.06 | lasso | 5 | 0.06 | 2.2e-05 | -8.65 | 8.6 | 9.9e-18 | 0.04 | 0.84 | 0.01 | FALSE |
92 | GTEx | Thyroid | ECI1 | 0.11 | 0.00 | enet | 14 | 0.02 | 2.0e-02 | 9.08 | -8.4 | 4.1e-17 | -0.02 | 0.07 | 0.04 | FALSE |
93 | GTEx | Thyroid | BRICD5 | 0.16 | 0.10 | lasso | 3 | 0.09 | 3.6e-07 | 9.91 | -10.4 | 2.4e-25 | -0.01 | 0.57 | 0.39 | FALSE |
94 | GTEx | Thyroid | Z97634.3 | 0.18 | 0.09 | enet | 24 | 0.09 | 3.9e-07 | 0.13 | -5.3 | 1.2e-07 | -0.06 | 0.85 | 0.05 | FALSE |
95 | GTEx | Uterus | NARFL | 0.41 | 0.34 | lasso | 1 | 0.32 | 2.7e-07 | 8.15 | 8.2 | 3.5e-16 | -0.01 | 0.01 | 0.97 | FALSE |
96 | GTEx | Whole Blood | NARFL | 0.11 | 0.06 | lasso | 3 | 0.06 | 7.4e-06 | 8.15 | 8.2 | 1.7e-16 | 0.00 | 0.01 | 0.99 | FALSE |
97 | GTEx | Whole Blood | RHBDL1 | 0.10 | 0.06 | lasso | 4 | 0.05 | 3.6e-05 | 5.89 | 5.8 | 5.2e-09 | 0.06 | 0.76 | 0.16 | FALSE |
98 | METSIM | Adipose | ADCY9 | 0.07 | 0.02 | bslmm | 409 | 0.04 | 1.0e-06 | 0.50 | 6.3 | 3.4e-10 | -0.44 | 0.90 | 0.07 | FALSE |
99 | METSIM | Adipose | BRICD5 | 0.07 | 0.04 | enet | 19 | 0.04 | 8.5e-07 | 5.98 | -7.8 | 4.1e-15 | -0.04 | 0.98 | 0.01 | FALSE |
100 | METSIM | Adipose | HAGHL | 0.10 | 0.07 | lasso | 2 | 0.06 | 5.6e-10 | 8.02 | 7.7 | 1.6e-14 | 0.00 | 0.01 | 0.99 | FALSE |
101 | METSIM | Adipose | NARFL | 0.13 | 0.14 | bslmm | 454 | 0.14 | 5.5e-20 | 8.31 | 7.4 | 1.5e-13 | 0.00 | 0.00 | 1.00 | FALSE |
102 | METSIM | Adipose | PKD1 | 0.06 | 0.02 | bslmm | 370 | 0.03 | 9.5e-06 | -8.92 | 6.8 | 8.3e-12 | -0.03 | 0.00 | 0.99 | FALSE |
103 | METSIM | Adipose | RNPS1 | 0.12 | 0.06 | blup | 347 | 0.05 | 4.9e-08 | 4.22 | -6.2 | 5.1e-10 | 0.03 | 1.00 | 0.00 | TRUE |
104 | METSIM | Adipose | STUB1 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.9e-05 | 5.10 | 5.9 | 3.8e-09 | 0.02 | 0.94 | 0.00 | FALSE |
105 | METSIM | Adipose | SYNGR3 | 0.11 | 0.03 | bslmm | 418 | 0.06 | 2.0e-09 | 6.01 | 5.6 | 2.7e-08 | 0.01 | 1.00 | 0.00 | TRUE |
106 | NTR | Blood | LOC100508121 | 0.02 | 0.01 | lasso | 2 | 0.01 | 2.7e-04 | 7.35 | 6.6 | 3.2e-11 | -0.02 | 0.02 | 0.91 | FALSE |
107 | ROSMAP | Brain Pre-frontal Cortex | SLC9A3R2 | 0.16 | 0.11 | lasso | 6 | 0.12 | 6.3e-15 | -8.28 | 8.3 | 1.4e-16 | -0.02 | 0.99 | 0.01 | TRUE |
108 | ROSMAP | Brain Pre-frontal Cortex | ROGDI | 0.26 | 0.30 | enet | 27 | 0.30 | 5.2e-39 | -4.80 | -5.5 | 3.9e-08 | -0.03 | 1.00 | 0.00 | FALSE |
109 | ROSMAP | Brain Pre-frontal Cortex | LMF1 | 0.28 | 0.26 | enet | 31 | 0.33 | 4.3e-43 | 6.17 | 5.8 | 8.3e-09 | 0.01 | 1.00 | 0.00 | FALSE |
110 | ROSMAP | Brain Pre-frontal Cortex | GFER | 0.15 | 0.09 | enet | 21 | 0.12 | 1.2e-14 | 6.15 | -6.4 | 1.3e-10 | -0.02 | 1.00 | 0.00 | FALSE |
111 | ROSMAP | Brain Pre-frontal Cortex | MLST8 | 0.22 | 0.18 | lasso | 6 | 0.18 | 7.1e-23 | 8.94 | 9.7 | 1.9e-22 | 0.01 | 0.99 | 0.01 | FALSE |
112 | ROSMAP | Brain Pre-frontal Cortex | BRICD5 | 0.19 | 0.05 | enet | 36 | 0.06 | 4.5e-08 | 8.88 | -6.5 | 1.0e-10 | -0.03 | 0.97 | 0.03 | FALSE |
113 | ROSMAP | Brain Pre-frontal Cortex | NOXO1 | 0.18 | 0.05 | blup | 412 | 0.10 | 6.6e-13 | 6.15 | -8.3 | 1.0e-16 | -0.02 | 1.00 | 0.00 | FALSE |
114 | ROSMAP | Brain Pre-frontal Cortex | RP11-161M6.2 | 0.39 | 0.38 | lasso | 5 | 0.43 | 1.4e-60 | 5.27 | -5.2 | 2.4e-07 | -0.02 | 1.00 | 0.00 | FALSE |
115 | ROSMAP | Brain Pre-frontal Cortex | RP11-462G12.1 | 0.11 | 0.07 | enet | 18 | 0.06 | 1.1e-08 | -10.80 | -9.3 | 1.2e-20 | 0.86 | 0.00 | 1.00 | TRUE |
116 | YFS | Blood | FAM173A | 0.12 | 0.07 | lasso | 6 | 0.10 | 2.0e-29 | 8.02 | 8.2 | 2.4e-16 | 0.03 | 0.02 | 0.98 | FALSE |
117 | YFS | Blood | METRN | 0.05 | 0.06 | lasso | 2 | 0.06 | 2.0e-18 | 8.02 | 8.3 | 6.9e-17 | 0.00 | 0.00 | 1.00 | FALSE |
118 | YFS | Blood | MLST8 | 0.12 | 0.06 | bslmm | 326 | 0.06 | 4.3e-20 | -8.65 | 10.7 | 7.6e-27 | -0.02 | 1.00 | 0.00 | FALSE |
119 | YFS | Blood | NARFL | 0.16 | 0.19 | lasso | 3 | 0.19 | 1.1e-60 | 8.31 | 8.5 | 1.4e-17 | -0.01 | 0.00 | 1.00 | FALSE |
120 | YFS | Blood | PGP | 0.17 | 0.14 | lasso | 3 | 0.14 | 9.2e-42 | -9.05 | -9.1 | 6.7e-20 | -0.04 | 1.00 | 0.00 | TRUE |
121 | YFS | Blood | WDR24 | 0.02 | 0.01 | bslmm | 408 | 0.00 | 8.8e-03 | 4.78 | 6.0 | 2.7e-09 | 0.03 | 0.48 | 0.02 | FALSE |
122 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | FAM173A | 0.04 | 0.03 | enet | 5 | 0.02 | 9.2e-03 | -5.34 | 5.2 | 2.0e-07 | 0.07 | 0.02 | 0.61 | FALSE |
123 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FAM173A | 0.02 | 0.03 | enet | 4 | 0.02 | 6.5e-05 | -6.39 | 7.2 | 4.4e-13 | 0.05 | 0.12 | 0.78 | FALSE |
124 | The Cancer Genome Atlas | Breast Invasive Carcinoma | METRN | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.0e-04 | 8.02 | 8.0 | 1.0e-15 | 0.01 | 0.00 | 0.97 | FALSE |
125 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RHOT2 | 0.01 | 0.01 | blup | 51 | 0.01 | 1.5e-02 | 5.74 | -5.9 | 4.3e-09 | -0.07 | 0.14 | 0.18 | FALSE |
126 | The Cancer Genome Atlas | Breast Invasive Carcinoma | WDR90 | 0.01 | 0.00 | lasso | 3 | 0.01 | 6.6e-03 | 4.92 | -5.2 | 2.4e-07 | -0.03 | 0.07 | 0.12 | FALSE |
127 | The Cancer Genome Atlas | Colon Adenocarcinoma | FAM173A | 0.13 | 0.12 | lasso | 5 | 0.13 | 6.6e-08 | 6.59 | 7.5 | 5.1e-14 | 0.04 | 0.03 | 0.97 | FALSE |
128 | The Cancer Genome Atlas | Colon Adenocarcinoma | HAGHL | 0.05 | 0.02 | blup | 42 | 0.04 | 3.1e-03 | 4.44 | 8.0 | 1.5e-15 | 0.02 | 0.02 | 0.58 | TRUE |
129 | The Cancer Genome Atlas | Colon Adenocarcinoma | LMF1 | 0.10 | 0.02 | blup | 99 | 0.03 | 6.1e-03 | 3.94 | 5.6 | 2.1e-08 | -0.02 | 0.02 | 0.89 | FALSE |
130 | The Cancer Genome Atlas | Colon Adenocarcinoma | METRN | 0.05 | 0.03 | blup | 52 | 0.04 | 2.2e-03 | 6.59 | 8.4 | 4.6e-17 | 0.00 | 0.01 | 0.73 | FALSE |
131 | The Cancer Genome Atlas | Colon Adenocarcinoma | MRPL28 | 0.14 | 0.02 | lasso | 2 | 0.05 | 8.3e-04 | -6.72 | -6.5 | 7.2e-11 | 0.04 | 0.00 | 0.99 | TRUE |
132 | The Cancer Genome Atlas | Colon Adenocarcinoma | UBN1 | 0.05 | 0.04 | enet | 7 | 0.05 | 4.2e-04 | -7.04 | 6.6 | 3.5e-11 | 0.06 | 0.06 | 0.24 | FALSE |
133 | The Cancer Genome Atlas | Glioblastoma Multiforme | CORO7 | 0.12 | 0.06 | lasso | 6 | 0.06 | 8.3e-03 | -4.65 | 5.2 | 1.5e-07 | -0.03 | 0.02 | 0.49 | TRUE |
134 | The Cancer Genome Atlas | Glioblastoma Multiforme | MLST8 | 0.17 | 0.04 | enet | 7 | 0.01 | 1.3e-01 | -9.28 | 7.5 | 5.5e-14 | -0.03 | 0.01 | 0.08 | TRUE |
135 | The Cancer Genome Atlas | Glioblastoma Multiforme | RNPS1 | 0.10 | 0.01 | lasso | 2 | 0.02 | 6.7e-02 | 4.22 | -6.7 | 2.0e-11 | -0.05 | 0.02 | 0.05 | FALSE |
136 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FAM173A | 0.07 | 0.05 | blup | 43 | 0.06 | 1.3e-07 | 4.57 | 5.2 | 1.6e-07 | 0.05 | 0.88 | 0.06 | FALSE |
137 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LMF1 | 0.12 | 0.06 | lasso | 4 | 0.08 | 1.8e-09 | 4.66 | 5.3 | 1.3e-07 | 0.00 | 0.08 | 0.92 | FALSE |
138 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RPS2 | 0.03 | 0.00 | blup | 59 | 0.01 | 8.0e-02 | -2.87 | -6.1 | 9.1e-10 | -0.03 | 0.01 | 0.64 | TRUE |
139 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZNF500 | 0.11 | 0.01 | blup | 49 | 0.03 | 8.8e-05 | -4.78 | 7.0 | 1.7e-12 | 0.04 | 0.01 | 0.40 | TRUE |
140 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | HAGHL | 0.03 | 0.04 | enet | 7 | 0.04 | 6.6e-05 | 7.80 | 6.4 | 1.9e-10 | 0.01 | 0.01 | 0.96 | FALSE |
141 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MLST8 | 0.04 | 0.04 | lasso | 3 | 0.03 | 7.6e-05 | 8.71 | 8.8 | 1.2e-18 | 0.05 | 0.28 | 0.32 | FALSE |
142 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ROGDI | 0.03 | 0.04 | lasso | 3 | 0.03 | 1.6e-04 | 5.50 | -5.4 | 5.8e-08 | 0.01 | 0.05 | 0.88 | FALSE |
143 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MLST8 | 0.11 | 0.08 | enet | 5 | 0.11 | 1.0e-06 | -8.65 | 7.7 | 1.3e-14 | 0.05 | 0.24 | 0.52 | FALSE |
144 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CASKIN1 | 0.02 | 0.00 | blup | 38 | 0.01 | 4.5e-02 | 8.92 | -10.0 | 1.7e-23 | -0.02 | 0.03 | 0.04 | FALSE |
145 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LMF1 | 0.15 | 0.19 | lasso | 8 | 0.19 | 2.8e-21 | 5.27 | 5.8 | 7.0e-09 | 0.02 | 0.44 | 0.56 | FALSE |
146 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LOC100134368 | 0.03 | 0.00 | enet | 5 | 0.01 | 2.8e-02 | -6.79 | -6.1 | 1.2e-09 | 0.06 | 0.01 | 0.75 | FALSE |
147 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MLST8 | 0.07 | 0.07 | enet | 6 | 0.08 | 1.2e-09 | -8.65 | 9.9 | 6.2e-23 | 0.03 | 0.06 | 0.94 | FALSE |
148 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NARFL | 0.06 | 0.05 | blup | 48 | 0.06 | 2.0e-07 | 8.02 | 6.5 | 8.9e-11 | 0.00 | 0.00 | 1.00 | FALSE |
149 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PGP | 0.05 | 0.01 | enet | 11 | 0.03 | 1.5e-04 | 8.71 | -7.0 | 2.1e-12 | 0.00 | 0.00 | 0.87 | FALSE |
150 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ROGDI | 0.05 | 0.02 | lasso | 2 | 0.03 | 6.0e-04 | -4.78 | -5.8 | 7.8e-09 | -0.05 | 0.06 | 0.07 | FALSE |
151 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SEPT12 | 0.19 | 0.27 | enet | 17 | 0.25 | 5.4e-28 | -4.78 | 5.3 | 8.8e-08 | 0.04 | 0.98 | 0.02 | FALSE |
152 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MLST8 | 0.10 | 0.02 | blup | 37 | 0.06 | 7.3e-04 | -9.34 | 8.4 | 2.8e-17 | 0.01 | 0.03 | 0.29 | FALSE |
153 | The Cancer Genome Atlas | Lung Adenocarcinoma | LOC100134368 | 0.05 | 0.00 | enet | 12 | 0.03 | 2.5e-04 | 3.25 | -5.9 | 4.7e-09 | 0.05 | 0.01 | 0.10 | FALSE |
154 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | FAM173A | 0.04 | 0.04 | lasso | 2 | 0.04 | 2.6e-05 | 5.54 | 5.5 | 4.5e-08 | 0.07 | 0.43 | 0.21 | FALSE |
155 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | HAGHL | 0.02 | 0.00 | blup | 42 | 0.01 | 7.0e-03 | 8.31 | 7.5 | 4.9e-14 | 0.04 | 0.01 | 0.94 | FALSE |
156 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SYNGR3 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.9e-04 | 6.15 | 6.2 | 6.5e-10 | 0.05 | 0.57 | 0.02 | TRUE |
157 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | FAM173A | 0.08 | 0.06 | blup | 43 | 0.05 | 1.5e-04 | 7.35 | 6.3 | 2.7e-10 | 0.05 | 0.07 | 0.74 | FALSE |
158 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | STUB1 | 0.04 | 0.04 | blup | 47 | 0.04 | 1.8e-03 | 4.44 | 6.3 | 2.5e-10 | 0.03 | 0.06 | 0.57 | FALSE |
159 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | WDR24 | 0.06 | 0.05 | blup | 52 | 0.06 | 5.7e-05 | 4.63 | 6.2 | 4.0e-10 | 0.02 | 0.15 | 0.58 | FALSE |
160 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | MLST8 | 0.09 | 0.05 | blup | 38 | 0.04 | 8.7e-03 | -9.28 | 8.9 | 6.8e-19 | 0.04 | 0.04 | 0.59 | FALSE |
161 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | FAM173A | 0.11 | 0.12 | lasso | 1 | 0.10 | 6.9e-05 | -6.39 | 6.4 | 1.6e-10 | 0.06 | 0.18 | 0.07 | FALSE |
162 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LMF1 | 0.11 | 0.10 | lasso | 5 | 0.09 | 2.0e-04 | 5.64 | 5.8 | 8.4e-09 | 0.02 | 0.02 | 0.94 | FALSE |
163 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AXIN1 | 0.07 | 0.03 | blup | 88 | 0.05 | 3.5e-06 | -3.54 | 5.4 | 8.5e-08 | 0.02 | 0.74 | 0.07 | FALSE |
164 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C16orf79 | 0.05 | 0.01 | lasso | 4 | 0.02 | 1.5e-03 | 8.92 | -11.1 | 2.0e-28 | -0.01 | 0.02 | 0.89 | TRUE |
165 | The Cancer Genome Atlas | Prostate Adenocarcinoma | HAGHL | 0.03 | 0.01 | blup | 41 | 0.01 | 2.2e-02 | 8.02 | 6.5 | 5.7e-11 | -0.01 | 0.02 | 0.68 | FALSE |
166 | The Cancer Genome Atlas | Prostate Adenocarcinoma | JMJD8 | 0.04 | 0.03 | blup | 50 | 0.03 | 5.0e-04 | 7.35 | -5.9 | 3.9e-09 | -0.03 | 0.15 | 0.11 | FALSE |
167 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC100134368 | 0.05 | 0.00 | blup | 48 | 0.04 | 2.5e-05 | -3.29 | -5.2 | 2.0e-07 | 0.04 | 0.07 | 0.44 | FALSE |
168 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MLST8 | 0.10 | 0.04 | enet | 7 | 0.09 | 2.5e-09 | 0.22 | 5.5 | 3.5e-08 | 0.04 | 0.57 | 0.42 | FALSE |
169 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PGP | 0.04 | 0.03 | lasso | 5 | 0.02 | 1.3e-03 | -7.86 | -9.1 | 1.2e-19 | -0.02 | 0.06 | 0.86 | FALSE |
170 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DNASE1L2 | 0.26 | 0.11 | enet | 13 | 0.10 | 2.5e-04 | -7.86 | -6.0 | 2.4e-09 | -0.03 | 0.03 | 0.09 | FALSE |
171 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SYNGR3 | 0.12 | 0.11 | lasso | 4 | 0.08 | 7.7e-04 | 6.00 | 6.0 | 2.0e-09 | 0.05 | 0.08 | 0.08 | FALSE |
172 | The Cancer Genome Atlas | Thyroid Carcinoma | CASKIN1 | 0.06 | 0.02 | blup | 38 | 0.04 | 1.5e-04 | -10.51 | -6.6 | 4.9e-11 | 0.04 | 0.00 | 0.97 | FALSE |
173 | The Cancer Genome Atlas | Thyroid Carcinoma | HAGHL | 0.07 | 0.04 | blup | 42 | 0.04 | 4.2e-05 | 8.15 | 6.8 | 1.5e-11 | -0.02 | 0.00 | 0.99 | FALSE |
174 | The Cancer Genome Atlas | Thyroid Carcinoma | LMF1 | 0.15 | 0.09 | lasso | 6 | 0.11 | 5.9e-11 | 4.66 | 5.5 | 3.2e-08 | -0.01 | 0.09 | 0.91 | FALSE |
175 | The Cancer Genome Atlas | Thyroid Carcinoma | MGRN1 | 0.11 | 0.04 | blup | 54 | 0.07 | 1.5e-07 | 4.34 | -5.1 | 2.8e-07 | -0.04 | 0.06 | 0.85 | FALSE |
176 | The Cancer Genome Atlas | Thyroid Carcinoma | MLST8 | 0.09 | 0.07 | enet | 8 | 0.09 | 9.9e-09 | 8.88 | 9.5 | 1.7e-21 | 0.04 | 0.04 | 0.96 | FALSE |
177 | The Cancer Genome Atlas | Thyroid Carcinoma | NUDT16L1 | 0.06 | 0.01 | lasso | 4 | 0.02 | 1.1e-02 | 3.35 | -5.2 | 1.5e-07 | -0.01 | 0.01 | 0.14 | FALSE |
178 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC9A3R2 | 0.06 | 0.03 | lasso | 5 | 0.03 | 3.7e-04 | -6.93 | 7.7 | 1.7e-14 | -0.02 | 0.07 | 0.72 | FALSE |