Best TWAS P=3.81e-85 · Best GWAS P=2.32e-92 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | C17orf107 | 0.06 | 0.01 | lasso | 3 | 0.03 | 3.7e-04 | -11.01 | -9.6 | 1.0e-21 | -0.06 | 0.33 | 0.02 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | ENO3 | 0.08 | 0.06 | lasso | 5 | 0.05 | 4.3e-07 | -7.76 | -6.5 | 8.1e-11 | -0.11 | 0.99 | 0.00 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | INCA1 | 0.12 | 0.02 | bslmm | 440 | 0.03 | 5.7e-05 | -6.80 | -9.1 | 6.5e-20 | -0.33 | 0.26 | 0.21 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | MIS12 | 0.15 | 0.08 | lasso | 3 | 0.10 | 2.1e-12 | 6.09 | 5.4 | 5.6e-08 | 0.10 | 1.00 | 0.00 | FALSE |
5 | CommonMind | Brain Pre-frontal Cortex | RNF167 | 0.06 | 0.02 | enet | 11 | 0.03 | 3.1e-04 | -5.44 | 6.1 | 9.2e-10 | 0.04 | 0.82 | 0.01 | FALSE |
6 | CommonMind | Brain Pre-frontal Cortex | SMG6 | 0.04 | 0.05 | lasso | 2 | 0.04 | 8.8e-06 | 5.75 | -5.4 | 7.3e-08 | -0.07 | 0.42 | 0.38 | FALSE |
7 | CommonMind | Brain Pre-frontal Cortex | SPAG7 | 0.18 | 0.10 | lasso | 4 | 0.12 | 1.0e-14 | 16.23 | 18.1 | 3.0e-73 | 0.92 | 0.00 | 1.00 | FALSE |
8 | GTEx | Adipose Subcutaneous | SPAG7 | 0.28 | 0.16 | lasso | 4 | 0.26 | 4.9e-21 | 16.88 | 19.5 | 2.5e-84 | 0.93 | 0.00 | 1.00 | FALSE |
9 | GTEx | Adipose Subcutaneous | CAMTA2 | 0.15 | 0.04 | lasso | 5 | 0.02 | 1.7e-02 | -7.35 | -6.7 | 1.7e-11 | -0.12 | 0.27 | 0.03 | FALSE |
10 | GTEx | Adipose Subcutaneous | RNF167 | 0.14 | 0.07 | lasso | 3 | 0.04 | 3.2e-04 | -2.04 | 5.2 | 2.6e-07 | 0.27 | 0.65 | 0.17 | FALSE |
11 | GTEx | Adipose Subcutaneous | GP1BA | 0.08 | 0.02 | lasso | 3 | 0.01 | 4.4e-02 | 20.38 | 15.0 | 7.5e-51 | 0.84 | 0.00 | 0.97 | FALSE |
12 | GTEx | Adipose Subcutaneous | RP1-59D14.5 | 0.07 | 0.02 | enet | 22 | 0.05 | 3.0e-05 | -12.48 | -5.8 | 5.4e-09 | 0.03 | 0.08 | 0.58 | FALSE |
13 | GTEx | Adrenal Gland | ZNF232 | 0.24 | 0.00 | enet | 43 | 0.08 | 7.0e-04 | -3.69 | -7.9 | 2.9e-15 | -0.41 | 0.08 | 0.29 | FALSE |
14 | GTEx | Artery Aorta | SPAG7 | 0.30 | 0.18 | lasso | 3 | 0.17 | 1.3e-09 | 16.88 | 16.7 | 2.8e-62 | 0.84 | 0.95 | 0.05 | TRUE |
15 | GTEx | Artery Aorta | ENO3 | 0.25 | 0.33 | lasso | 5 | 0.32 | 2.7e-18 | -8.35 | -7.5 | 5.2e-14 | -0.20 | 1.00 | 0.00 | FALSE |
16 | GTEx | Artery Aorta | RPA1 | 0.19 | 0.04 | enet | 32 | 0.11 | 9.3e-07 | 1.50 | -5.4 | 7.7e-08 | -0.09 | 0.18 | 0.19 | TRUE |
17 | GTEx | Artery Aorta | AC012146.7 | 0.16 | 0.06 | enet | 25 | 0.07 | 1.0e-04 | 3.80 | -5.3 | 8.6e-08 | -0.15 | 0.36 | 0.03 | TRUE |
18 | GTEx | Artery Tibial | SPAG7 | 0.13 | 0.04 | lasso | 7 | 0.03 | 2.0e-03 | -5.44 | 12.8 | 1.8e-37 | 0.47 | 0.17 | 0.74 | FALSE |
19 | GTEx | Artery Tibial | SGSM2 | 0.12 | 0.02 | enet | 11 | 0.05 | 1.6e-04 | 10.64 | -8.0 | 1.5e-15 | -0.01 | 0.20 | 0.57 | TRUE |
20 | GTEx | Artery Tibial | MINK1 | 0.09 | 0.03 | lasso | 5 | 0.01 | 4.0e-02 | 12.29 | 10.6 | 2.1e-26 | 0.50 | 0.09 | 0.09 | FALSE |
21 | GTEx | Artery Tibial | CRK | 0.19 | 0.14 | lasso | 6 | 0.18 | 3.5e-14 | 4.78 | 5.6 | 2.4e-08 | 0.13 | 0.07 | 0.93 | FALSE |
22 | GTEx | Artery Tibial | GP1BA | 0.12 | 0.05 | lasso | 5 | 0.08 | 7.6e-07 | 3.06 | 10.4 | 1.9e-25 | 0.73 | 0.01 | 0.99 | FALSE |
23 | GTEx | Artery Tibial | ANKFY1 | 0.07 | 0.00 | enet | 21 | 0.00 | 1.6e-01 | -5.68 | -5.7 | 1.0e-08 | 0.01 | 0.29 | 0.03 | FALSE |
24 | GTEx | Artery Tibial | RP1-59D14.5 | 0.17 | 0.13 | lasso | 5 | 0.09 | 2.9e-07 | -5.73 | -5.6 | 2.7e-08 | 0.01 | 1.00 | 0.00 | FALSE |
25 | GTEx | Brain Caudate basal ganglia | ENO3 | 0.24 | 0.11 | lasso | 4 | 0.13 | 1.4e-04 | -8.35 | -5.9 | 4.5e-09 | -0.18 | 0.30 | 0.07 | FALSE |
26 | GTEx | Brain Cerebellar Hemisphere | DPH1 | 0.35 | 0.31 | lasso | 2 | 0.31 | 9.8e-09 | -6.57 | -6.2 | 7.8e-10 | -0.01 | 0.44 | 0.04 | FALSE |
27 | GTEx | Brain Cerebellum | RABEP1 | 0.21 | 0.16 | enet | 10 | 0.11 | 3.7e-04 | -5.64 | -5.6 | 1.9e-08 | -0.03 | 0.17 | 0.05 | FALSE |
28 | GTEx | Brain Cerebellum | SMG6 | 0.24 | 0.03 | enet | 16 | 0.05 | 1.3e-02 | -2.89 | -8.7 | 4.2e-18 | -0.01 | 0.09 | 0.06 | TRUE |
29 | GTEx | Brain Cerebellum | DPH1 | 0.52 | 0.30 | lasso | 8 | 0.31 | 8.9e-10 | -6.57 | -6.7 | 2.0e-11 | -0.02 | 0.76 | 0.02 | FALSE |
30 | GTEx | Brain Cortex | SMYD4 | 0.34 | 0.17 | lasso | 4 | 0.23 | 5.3e-07 | -1.38 | 5.1 | 3.0e-07 | -0.01 | 0.23 | 0.25 | FALSE |
31 | GTEx | Brain Frontal Cortex BA9 | HNRNPA1P16 | 0.22 | -0.01 | enet | 25 | 0.06 | 8.6e-03 | 11.11 | -10.9 | 7.6e-28 | 0.01 | 0.07 | 0.13 | FALSE |
32 | GTEx | Brain Putamen basal ganglia | P2RX1 | 0.53 | 0.01 | enet | 37 | 0.17 | 8.0e-05 | -5.06 | -5.5 | 3.2e-08 | -0.02 | 0.01 | 0.80 | FALSE |
33 | GTEx | Brain Putamen basal ganglia | AC012146.7 | 0.30 | 0.03 | enet | 23 | 0.03 | 7.6e-02 | 4.19 | -8.0 | 1.1e-15 | -0.40 | 0.10 | 0.09 | FALSE |
34 | GTEx | Breast Mammary Tissue | SPAG7 | 0.23 | 0.15 | lasso | 3 | 0.09 | 2.3e-05 | 16.88 | 17.0 | 1.6e-64 | 0.85 | 0.76 | 0.19 | FALSE |
35 | GTEx | Cells EBV-transformed lymphocytes | MNT | 0.42 | 0.10 | lasso | 9 | 0.14 | 3.0e-05 | 10.39 | -12.5 | 4.4e-36 | -0.06 | 0.35 | 0.07 | FALSE |
36 | GTEx | Cells EBV-transformed lymphocytes | RP1-59D14.1 | 0.22 | 0.01 | lasso | 4 | 0.01 | 1.3e-01 | 10.39 | -13.0 | 1.2e-38 | -0.06 | 0.07 | 0.10 | FALSE |
37 | GTEx | Cells Transformed fibroblasts | SPAG7 | 0.43 | 0.26 | enet | 17 | 0.30 | 7.1e-23 | 16.88 | 15.7 | 1.5e-55 | 0.80 | 1.00 | 0.00 | FALSE |
38 | GTEx | Cells Transformed fibroblasts | ENO3 | 0.07 | 0.06 | lasso | 5 | 0.06 | 2.2e-05 | -7.76 | -6.6 | 3.1e-11 | -0.18 | 0.73 | 0.01 | FALSE |
39 | GTEx | Cells Transformed fibroblasts | DPH1 | 0.28 | 0.12 | enet | 6 | 0.23 | 4.0e-17 | -9.97 | -7.6 | 3.5e-14 | -0.01 | 1.00 | 0.00 | TRUE |
40 | GTEx | Cells Transformed fibroblasts | PLD2 | 0.37 | 0.24 | lasso | 5 | 0.30 | 5.5e-23 | 3.26 | 5.2 | 2.3e-07 | 0.23 | 1.00 | 0.00 | FALSE |
41 | GTEx | Cells Transformed fibroblasts | GP1BA | 0.22 | 0.10 | enet | 9 | 0.18 | 3.1e-13 | 4.50 | 10.5 | 6.2e-26 | 0.66 | 0.23 | 0.77 | FALSE |
42 | GTEx | Cells Transformed fibroblasts | ANKFY1 | 0.10 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -6.40 | 6.9 | 5.3e-12 | 0.05 | 0.43 | 0.37 | TRUE |
43 | GTEx | Cells Transformed fibroblasts | RTN4RL1 | 0.13 | 0.04 | lasso | 4 | 0.04 | 2.9e-04 | -2.70 | -5.7 | 1.3e-08 | -0.09 | 0.32 | 0.03 | TRUE |
44 | GTEx | Cells Transformed fibroblasts | RP5-1050D4.3 | 0.18 | 0.07 | lasso | 5 | 0.09 | 6.1e-07 | 17.93 | 14.1 | 2.5e-45 | 0.75 | 0.52 | 0.39 | FALSE |
45 | GTEx | Cells Transformed fibroblasts | RP11-667K14.4 | 0.12 | 0.12 | lasso | 5 | 0.11 | 2.1e-08 | -9.97 | -9.9 | 2.7e-23 | -0.06 | 0.99 | 0.00 | FALSE |
46 | GTEx | Colon Sigmoid | SPAG7 | 0.35 | 0.15 | lasso | 7 | 0.15 | 6.1e-06 | 16.25 | 16.9 | 5.2e-64 | 0.79 | 0.08 | 0.70 | FALSE |
47 | GTEx | Colon Transverse | SPAG7 | 0.36 | 0.21 | lasso | 6 | 0.21 | 3.4e-10 | 16.88 | 17.5 | 1.3e-68 | 0.84 | 0.06 | 0.94 | FALSE |
48 | GTEx | Colon Transverse | RP1-59D14.5 | 0.22 | 0.14 | lasso | 3 | 0.11 | 4.5e-06 | -5.73 | -6.0 | 2.2e-09 | 0.02 | 0.49 | 0.03 | FALSE |
49 | GTEx | Esophagus Gastroesophageal Junction | RABEP1 | 0.19 | -0.01 | lasso | 13 | 0.00 | 4.2e-01 | 4.65 | -7.8 | 7.4e-15 | -0.20 | 0.16 | 0.06 | FALSE |
50 | GTEx | Esophagus Gastroesophageal Junction | CRK | 0.24 | 0.08 | lasso | 4 | 0.06 | 4.2e-03 | 5.02 | 5.1 | 2.8e-07 | 0.11 | 0.05 | 0.56 | FALSE |
51 | GTEx | Esophagus Gastroesophageal Junction | GP1BA | 0.35 | 0.16 | lasso | 11 | 0.18 | 5.9e-07 | 2.56 | 8.5 | 2.1e-17 | 0.49 | 0.21 | 0.67 | FALSE |
52 | GTEx | Esophagus Mucosa | SPAG7 | 0.55 | 0.45 | enet | 18 | 0.46 | 6.1e-34 | 16.88 | 17.2 | 5.7e-66 | 0.84 | 1.00 | 0.00 | FALSE |
53 | GTEx | Esophagus Mucosa | SGSM2 | 0.28 | 0.32 | lasso | 5 | 0.32 | 6.9e-22 | -9.91 | 9.2 | 3.2e-20 | 0.06 | 1.00 | 0.00 | TRUE |
54 | GTEx | Esophagus Mucosa | GP1BA | 0.13 | 0.01 | lasso | 8 | 0.03 | 4.0e-03 | 11.05 | 16.9 | 2.1e-64 | 0.86 | 0.00 | 0.99 | FALSE |
55 | GTEx | Esophagus Mucosa | AC012146.7 | 0.17 | 0.11 | enet | 25 | 0.13 | 3.3e-09 | 3.85 | -6.5 | 1.0e-10 | -0.21 | 0.98 | 0.00 | FALSE |
56 | GTEx | Esophagus Mucosa | RP1-59D14.5 | 0.14 | 0.15 | lasso | 2 | 0.14 | 1.3e-09 | -9.91 | 9.9 | 4.9e-23 | 0.06 | 0.99 | 0.00 | FALSE |
57 | GTEx | Esophagus Muscularis | SPAG7 | 0.22 | 0.08 | enet | 24 | 0.13 | 1.7e-08 | 20.38 | 16.6 | 3.9e-62 | 0.68 | 0.00 | 1.00 | FALSE |
58 | GTEx | Esophagus Muscularis | PLD2 | 0.23 | 0.11 | enet | 9 | 0.17 | 2.0e-10 | 3.26 | 5.7 | 1.2e-08 | 0.20 | 0.99 | 0.00 | FALSE |
59 | GTEx | Esophagus Muscularis | RP11-667K14.4 | 0.12 | 0.03 | lasso | 6 | 0.03 | 8.1e-03 | -6.05 | 8.0 | 9.2e-16 | 0.05 | 0.18 | 0.16 | FALSE |
60 | GTEx | Heart Atrial Appendage | RABEP1 | 0.13 | 0.10 | enet | 11 | 0.12 | 7.2e-06 | 5.07 | -5.1 | 2.8e-07 | -0.08 | 0.82 | 0.01 | FALSE |
61 | GTEx | Heart Left Ventricle | SPAG7 | 0.19 | 0.14 | lasso | 2 | 0.12 | 7.0e-07 | 16.88 | 16.8 | 1.2e-63 | 0.84 | 0.64 | 0.14 | FALSE |
62 | GTEx | Liver | SRR | 0.31 | 0.00 | lasso | 7 | 0.00 | 3.0e-01 | -1.93 | 6.7 | 2.4e-11 | -0.04 | 0.06 | 0.15 | FALSE |
63 | GTEx | Lung | MNT | 0.14 | 0.05 | lasso | 5 | 0.04 | 3.8e-04 | -7.14 | -6.4 | 1.4e-10 | -0.03 | 0.77 | 0.01 | TRUE |
64 | GTEx | Lung | SPAG7 | 0.35 | 0.17 | enet | 35 | 0.19 | 2.3e-14 | 16.25 | 17.1 | 9.9e-66 | 0.78 | 0.11 | 0.89 | FALSE |
65 | GTEx | Lung | RP1-59D14.1 | 0.08 | 0.03 | lasso | 2 | 0.01 | 8.6e-02 | -7.14 | -6.9 | 6.2e-12 | -0.03 | 0.12 | 0.04 | FALSE |
66 | GTEx | Muscle Skeletal | PAFAH1B1 | 0.17 | 0.05 | lasso | 7 | 0.04 | 6.5e-05 | 5.06 | 5.9 | 4.1e-09 | 0.00 | 0.92 | 0.00 | FALSE |
67 | GTEx | Muscle Skeletal | SPAG7 | 0.22 | 0.13 | lasso | 6 | 0.11 | 3.8e-11 | 16.88 | 17.3 | 5.7e-67 | 0.84 | 0.98 | 0.02 | FALSE |
68 | GTEx | Muscle Skeletal | RNF167 | 0.08 | 0.01 | lasso | 5 | 0.00 | 1.8e-01 | -6.27 | -6.5 | 6.3e-11 | -0.15 | 0.20 | 0.03 | FALSE |
69 | GTEx | Muscle Skeletal | METTL16 | 0.19 | 0.06 | enet | 22 | 0.07 | 1.0e-07 | 4.17 | 7.1 | 1.6e-12 | 0.04 | 0.91 | 0.00 | TRUE |
70 | GTEx | Nerve Tibial | SPAG7 | 0.21 | 0.14 | lasso | 2 | 0.13 | 1.1e-09 | 16.25 | 16.4 | 1.8e-60 | 0.82 | 0.86 | 0.14 | FALSE |
71 | GTEx | Nerve Tibial | CRK | 0.23 | 0.12 | lasso | 6 | 0.17 | 2.5e-12 | 5.02 | 5.5 | 3.0e-08 | 0.13 | 0.10 | 0.90 | FALSE |
72 | GTEx | Nerve Tibial | INCA1 | 0.10 | 0.03 | lasso | 4 | 0.03 | 1.6e-03 | -8.35 | -8.0 | 9.4e-16 | -0.16 | 0.41 | 0.02 | FALSE |
73 | GTEx | Ovary | DPH1 | 0.67 | 0.38 | lasso | 6 | 0.39 | 1.0e-10 | -6.57 | -5.5 | 4.6e-08 | 0.02 | 0.75 | 0.01 | FALSE |
74 | GTEx | Pancreas | SPAG7 | 0.31 | 0.16 | lasso | 4 | 0.16 | 3.1e-07 | 16.88 | 18.6 | 1.8e-77 | 0.91 | 0.02 | 0.98 | FALSE |
75 | GTEx | Pancreas | USP6 | 0.30 | 0.06 | enet | 39 | 0.14 | 1.3e-06 | -3.69 | -7.0 | 1.8e-12 | -0.35 | 0.68 | 0.05 | FALSE |
76 | GTEx | Pancreas | SERPINF1 | 0.31 | 0.08 | enet | 26 | 0.06 | 1.1e-03 | 3.52 | 5.1 | 3.0e-07 | 0.04 | 0.11 | 0.45 | FALSE |
77 | GTEx | Pancreas | ZNF232 | 0.26 | 0.15 | enet | 50 | 0.11 | 1.6e-05 | -3.69 | -9.7 | 2.9e-22 | -0.38 | 0.76 | 0.04 | TRUE |
78 | GTEx | Pituitary | DPH1 | 0.66 | 0.47 | lasso | 6 | 0.45 | 7.1e-13 | -6.57 | -6.0 | 2.2e-09 | -0.01 | 0.97 | 0.00 | FALSE |
79 | GTEx | Skin Not Sun Exposed Suprapubic | MNT | 0.16 | 0.06 | lasso | 7 | 0.04 | 2.6e-03 | -7.13 | -8.5 | 1.3e-17 | -0.04 | 0.18 | 0.08 | FALSE |
80 | GTEx | Skin Not Sun Exposed Suprapubic | SPAG7 | 0.47 | 0.36 | lasso | 8 | 0.36 | 1.5e-20 | 16.88 | 16.8 | 5.5e-63 | 0.84 | 1.00 | 0.00 | FALSE |
81 | GTEx | Skin Not Sun Exposed Suprapubic | RP1-59D14.1 | 0.16 | 0.07 | lasso | 5 | 0.03 | 1.2e-02 | -7.13 | -7.5 | 5.0e-14 | -0.04 | 0.11 | 0.11 | FALSE |
82 | GTEx | Skin Sun Exposed Lower leg | MNT | 0.10 | 0.09 | enet | 16 | 0.08 | 5.1e-07 | -7.13 | -8.9 | 7.1e-19 | -0.04 | 0.97 | 0.00 | FALSE |
83 | GTEx | Skin Sun Exposed Lower leg | SPAG7 | 0.49 | 0.36 | lasso | 7 | 0.38 | 8.0e-33 | 16.88 | 17.1 | 1.5e-65 | 0.84 | 1.00 | 0.00 | FALSE |
84 | GTEx | Skin Sun Exposed Lower leg | CAMTA2 | 0.12 | 0.01 | lasso | 5 | 0.02 | 3.7e-03 | 10.44 | 5.8 | 6.3e-09 | 0.19 | 0.82 | 0.01 | FALSE |
85 | GTEx | Skin Sun Exposed Lower leg | SGSM2 | 0.50 | 0.47 | enet | 11 | 0.51 | 3.3e-48 | -9.91 | 6.4 | 1.2e-10 | 0.04 | 1.00 | 0.00 | FALSE |
86 | GTEx | Skin Sun Exposed Lower leg | GP1BA | 0.10 | 0.04 | enet | 7 | 0.03 | 8.9e-04 | 20.38 | 16.3 | 9.5e-60 | 0.93 | 0.00 | 1.00 | FALSE |
87 | GTEx | Skin Sun Exposed Lower leg | AC012146.7 | 0.21 | 0.07 | enet | 17 | 0.18 | 1.3e-14 | 4.61 | -5.8 | 5.3e-09 | -0.18 | 1.00 | 0.00 | FALSE |
88 | GTEx | Skin Sun Exposed Lower leg | RP1-59D14.1 | 0.11 | 0.07 | lasso | 4 | 0.06 | 1.8e-05 | -7.13 | -7.5 | 6.9e-14 | -0.02 | 0.85 | 0.01 | FALSE |
89 | GTEx | Skin Sun Exposed Lower leg | RP1-59D14.5 | 0.32 | 0.28 | lasso | 5 | 0.30 | 1.8e-25 | -9.91 | 7.0 | 2.8e-12 | 0.05 | 1.00 | 0.00 | FALSE |
90 | GTEx | Spleen | SPAG7 | 0.73 | 0.22 | lasso | 14 | 0.15 | 1.4e-04 | 20.38 | 17.5 | 1.5e-68 | 0.88 | 0.00 | 1.00 | FALSE |
91 | GTEx | Spleen | ZNF232 | 0.61 | 0.00 | enet | 63 | 0.14 | 1.8e-04 | -3.91 | -5.3 | 8.7e-08 | -0.14 | 0.14 | 0.08 | FALSE |
92 | GTEx | Stomach | CRK | 0.18 | 0.06 | lasso | 5 | 0.08 | 1.8e-04 | -4.63 | 5.4 | 5.5e-08 | 0.14 | 0.02 | 0.97 | FALSE |
93 | GTEx | Testis | PLD2 | 0.38 | 0.02 | lasso | 7 | 0.04 | 9.9e-03 | -3.49 | 5.5 | 3.7e-08 | 0.23 | 0.07 | 0.05 | TRUE |
94 | GTEx | Thyroid | SPAG7 | 0.22 | 0.19 | enet | 7 | 0.19 | 2.1e-14 | 16.25 | 17.5 | 3.2e-68 | 0.84 | 0.98 | 0.02 | FALSE |
95 | GTEx | Thyroid | SLC25A11 | 0.08 | 0.05 | lasso | 5 | 0.02 | 6.4e-03 | 10.44 | 10.1 | 6.0e-24 | 0.39 | 0.12 | 0.04 | FALSE |
96 | GTEx | Thyroid | KIF1C | 0.15 | 0.07 | enet | 15 | 0.08 | 1.7e-06 | -6.82 | 6.7 | 2.1e-11 | 0.09 | 0.93 | 0.00 | FALSE |
97 | GTEx | Thyroid | CRK | 0.12 | 0.05 | enet | 10 | 0.10 | 5.9e-08 | 4.64 | 5.4 | 6.0e-08 | 0.13 | 0.01 | 0.99 | FALSE |
98 | GTEx | Thyroid | ZNF232 | 0.25 | 0.11 | enet | 35 | 0.18 | 7.8e-14 | 0.87 | -5.2 | 2.3e-07 | -0.29 | 1.00 | 0.00 | FALSE |
99 | GTEx | Thyroid | AC109333.10 | 0.09 | 0.06 | lasso | 4 | 0.03 | 2.5e-03 | -7.35 | 7.6 | 3.3e-14 | 0.14 | 0.28 | 0.03 | FALSE |
100 | GTEx | Thyroid | RP11-333E1.1 | 0.11 | 0.05 | lasso | 6 | 0.04 | 3.1e-04 | 6.81 | 6.1 | 8.4e-10 | 0.05 | 0.23 | 0.03 | TRUE |
101 | GTEx | Whole Blood | SPAG7 | 0.28 | 0.16 | lasso | 4 | 0.16 | 1.4e-14 | 16.88 | 17.3 | 7.4e-67 | 0.84 | 1.00 | 0.00 | FALSE |
102 | GTEx | Whole Blood | P2RX1 | 0.48 | 0.37 | lasso | 8 | 0.36 | 1.6e-34 | 5.51 | -6.4 | 2.0e-10 | 0.01 | 1.00 | 0.00 | FALSE |
103 | GTEx | Whole Blood | PLD2 | 0.14 | 0.09 | lasso | 2 | 0.13 | 6.7e-12 | 8.18 | 6.7 | 2.2e-11 | 0.24 | 1.00 | 0.00 | FALSE |
104 | METSIM | Adipose | AC006435.1 | 0.11 | 0.05 | lasso | 11 | 0.07 | 9.4e-11 | 4.14 | -5.3 | 1.3e-07 | -0.03 | 0.98 | 0.00 | FALSE |
105 | METSIM | Adipose | ARRB2 | 0.10 | 0.00 | blup | 431 | 0.04 | 4.1e-07 | 4.03 | 7.1 | 1.5e-12 | 0.27 | 0.92 | 0.04 | FALSE |
106 | METSIM | Adipose | P2RX1 | 0.19 | 0.10 | lasso | 9 | 0.10 | 4.2e-14 | 5.51 | -6.0 | 2.3e-09 | 0.01 | 0.99 | 0.01 | FALSE |
107 | METSIM | Adipose | RNF167 | 0.07 | 0.01 | blup | 440 | 0.01 | 5.0e-03 | -7.98 | 9.0 | 3.0e-19 | 0.13 | 0.31 | 0.03 | TRUE |
108 | METSIM | Adipose | SLC52A1 | 0.07 | 0.02 | lasso | 7 | 0.05 | 1.8e-07 | 8.18 | -9.9 | 5.1e-23 | -0.37 | 0.97 | 0.01 | FALSE |
109 | METSIM | Adipose | SPAG7 | 0.10 | 0.08 | lasso | 6 | 0.07 | 1.3e-10 | 17.93 | 18.0 | 1.5e-72 | 0.85 | 0.18 | 0.82 | FALSE |
110 | NTR | Blood | CAMTA2 | 0.06 | 0.01 | bslmm | 440 | 0.03 | 3.8e-11 | -7.35 | 6.3 | 2.6e-10 | 0.11 | 1.00 | 0.00 | FALSE |
111 | NTR | Blood | RNF167 | 0.03 | 0.01 | bslmm | 438 | 0.01 | 1.3e-03 | -6.27 | 6.2 | 6.0e-10 | 0.10 | 0.82 | 0.00 | FALSE |
112 | ROSMAP | Brain Pre-frontal Cortex | PAFAH1B1 | 0.10 | 0.03 | enet | 19 | 0.06 | 1.1e-08 | 5.02 | 5.4 | 6.5e-08 | -0.02 | 0.98 | 0.01 | TRUE |
113 | ROSMAP | Brain Pre-frontal Cortex | MNT | 0.09 | 0.04 | lasso | 5 | 0.06 | 9.5e-09 | 5.86 | -11.0 | 3.0e-28 | -0.04 | 1.00 | 0.00 | FALSE |
114 | ROSMAP | Brain Pre-frontal Cortex | ZZEF1 | 0.07 | 0.06 | lasso | 5 | 0.06 | 8.1e-08 | -6.38 | -6.3 | 3.7e-10 | -0.06 | 0.82 | 0.18 | FALSE |
115 | ROSMAP | Brain Pre-frontal Cortex | SPAG7 | 0.35 | 0.29 | lasso | 4 | 0.39 | 2.3e-53 | 17.93 | 17.6 | 1.7e-69 | 0.77 | 1.00 | 0.00 | FALSE |
116 | ROSMAP | Brain Pre-frontal Cortex | ENO3 | 0.13 | 0.12 | enet | 22 | 0.14 | 4.8e-18 | -7.76 | -8.1 | 5.0e-16 | -0.14 | 1.00 | 0.00 | FALSE |
117 | ROSMAP | Brain Pre-frontal Cortex | SLC25A11 | 0.23 | 0.23 | enet | 9 | 0.25 | 1.7e-31 | -7.35 | -6.2 | 6.2e-10 | -0.07 | 1.00 | 0.00 | FALSE |
118 | ROSMAP | Brain Pre-frontal Cortex | ANKFY1 | 0.05 | 0.03 | enet | 11 | 0.02 | 1.2e-03 | -5.27 | -5.5 | 2.8e-08 | -0.06 | 0.36 | 0.06 | FALSE |
119 | YFS | Blood | ENO3 | 0.03 | 0.00 | blup | 425 | 0.01 | 4.5e-04 | 2.40 | -5.7 | 9.8e-09 | -0.24 | 0.08 | 0.12 | FALSE |
120 | YFS | Blood | MINK1 | 0.18 | 0.11 | enet | 24 | 0.16 | 4.3e-50 | 4.50 | 8.1 | 6.7e-16 | 0.49 | 1.00 | 0.00 | FALSE |
121 | YFS | Blood | P2RX1 | 0.56 | 0.54 | enet | 30 | 0.58 | 5.0e-240 | 5.51 | -6.5 | 9.6e-11 | 0.03 | 1.00 | 0.00 | FALSE |
122 | YFS | Blood | RABEP1 | 0.46 | 0.60 | bslmm | 543 | 0.63 | 5.5e-272 | 5.29 | 5.3 | 9.8e-08 | 0.00 | 1.00 | 0.00 | FALSE |
123 | YFS | Blood | RNF167 | 0.25 | 0.34 | enet | 17 | 0.34 | 2.5e-118 | -7.98 | -7.6 | 4.0e-14 | -0.10 | 1.00 | 0.00 | FALSE |
124 | YFS | Blood | SGSM2 | 0.05 | 0.03 | lasso | 8 | 0.03 | 3.9e-11 | 6.80 | -8.3 | 1.1e-16 | 0.00 | 1.00 | 0.00 | FALSE |
125 | YFS | Blood | SLC25A11 | 0.06 | 0.02 | bslmm | 422 | 0.04 | 3.5e-14 | 20.30 | -15.9 | 8.4e-57 | -0.90 | 0.00 | 1.00 | FALSE |
126 | YFS | Blood | SPAG7 | 0.24 | 0.18 | enet | 44 | 0.20 | 1.2e-64 | 17.93 | 17.3 | 4.3e-67 | 0.84 | 1.00 | 0.00 | FALSE |
127 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CHRNE | 0.07 | 0.09 | blup | 41 | 0.08 | 4.4e-07 | 1.03 | -6.7 | 2.1e-11 | -0.35 | 0.96 | 0.02 | FALSE |
128 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SPAG7 | 0.10 | 0.00 | enet | 6 | 0.05 | 8.9e-05 | -5.30 | 14.6 | 4.7e-48 | 0.48 | 0.02 | 0.23 | FALSE |
129 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LOC284009 | 0.02 | 0.01 | blup | 59 | 0.01 | 1.4e-02 | 4.14 | -9.3 | 2.1e-20 | -0.04 | 0.02 | 0.11 | FALSE |
130 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SMG6 | 0.03 | 0.01 | blup | 144 | 0.01 | 4.8e-03 | -8.94 | -18.3 | 4.9e-75 | -0.05 | 0.07 | 0.70 | TRUE |
131 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SPAG7 | 0.12 | 0.08 | lasso | 5 | 0.09 | 1.0e-17 | 16.88 | 17.6 | 4.4e-69 | 0.82 | 1.00 | 0.00 | FALSE |
132 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ZNF232 | 0.02 | 0.01 | blup | 33 | 0.02 | 5.2e-05 | -2.83 | -5.4 | 7.0e-08 | -0.05 | 0.00 | 0.97 | FALSE |
133 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | SPAG7 | 0.17 | 0.09 | lasso | 3 | 0.09 | 3.1e-05 | 16.88 | 17.8 | 8.6e-71 | 0.89 | 0.00 | 0.98 | FALSE |
134 | The Cancer Genome Atlas | Colon Adenocarcinoma | ATP2A3 | 0.09 | 0.08 | blup | 67 | 0.07 | 1.1e-04 | -5.27 | 5.7 | 1.2e-08 | 0.02 | 0.22 | 0.04 | FALSE |
135 | The Cancer Genome Atlas | Colon Adenocarcinoma | C17orf107 | 0.05 | 0.03 | lasso | 3 | 0.04 | 3.9e-03 | 1.17 | 6.2 | 6.8e-10 | 0.13 | 0.13 | 0.05 | TRUE |
136 | The Cancer Genome Atlas | Colon Adenocarcinoma | SPAG7 | 0.24 | 0.16 | enet | 7 | 0.16 | 2.3e-09 | 17.93 | 16.9 | 2.0e-64 | 0.83 | 0.38 | 0.62 | FALSE |
137 | The Cancer Genome Atlas | Esophageal Carcinoma | ZNF232 | 0.10 | 0.06 | blup | 33 | 0.08 | 1.3e-03 | 3.80 | -5.2 | 1.6e-07 | -0.02 | 0.02 | 0.35 | FALSE |
138 | The Cancer Genome Atlas | Glioblastoma Multiforme | RABEP1 | 0.23 | 0.13 | blup | 79 | 0.15 | 3.4e-05 | 4.76 | -5.6 | 1.8e-08 | -0.02 | 0.25 | 0.33 | FALSE |
139 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SPAG7 | 0.13 | 0.03 | enet | 7 | 0.09 | 1.4e-10 | 1.48 | 11.7 | 9.7e-32 | 0.57 | 0.41 | 0.57 | FALSE |
140 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZNF232 | 0.07 | 0.05 | enet | 5 | 0.06 | 2.7e-07 | 3.80 | -5.2 | 1.9e-07 | -0.08 | 0.74 | 0.13 | FALSE |
141 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MIS12 | 0.05 | 0.01 | enet | 6 | 0.02 | 2.1e-03 | 4.69 | 7.1 | 9.2e-13 | 0.20 | 0.00 | 0.75 | TRUE |
142 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SPAG7 | 0.15 | 0.07 | enet | 19 | 0.11 | 2.0e-12 | 17.93 | 13.9 | 4.0e-44 | 0.68 | 0.47 | 0.53 | FALSE |
143 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CHRNE | 0.10 | 0.06 | blup | 41 | 0.07 | 1.1e-04 | 0.45 | 5.6 | 2.8e-08 | 0.05 | 0.29 | 0.02 | FALSE |
144 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SMG6 | 0.08 | 0.05 | blup | 144 | 0.07 | 1.3e-04 | -12.85 | -18.3 | 5.8e-75 | -0.05 | 0.03 | 0.95 | FALSE |
145 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SPAG7 | 0.29 | 0.08 | blup | 46 | 0.15 | 3.7e-09 | 16.88 | 17.8 | 5.2e-71 | 0.81 | 0.00 | 1.00 | FALSE |
146 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SPAG7 | 0.07 | 0.09 | lasso | 3 | 0.08 | 9.7e-10 | -6.80 | 7.1 | 1.0e-12 | 0.18 | 1.00 | 0.00 | FALSE |
147 | The Cancer Genome Atlas | Lung Adenocarcinoma | ENO3 | 0.04 | 0.03 | lasso | 1 | 0.03 | 1.7e-04 | -7.35 | 7.3 | 2.0e-13 | 0.14 | 0.26 | 0.03 | FALSE |
148 | The Cancer Genome Atlas | Lung Adenocarcinoma | GP1BA | 0.18 | 0.01 | enet | 11 | 0.06 | 5.9e-08 | 3.06 | 7.0 | 2.3e-12 | 0.34 | 0.49 | 0.10 | FALSE |
149 | The Cancer Genome Atlas | Lung Adenocarcinoma | P2RX1 | 0.05 | 0.02 | blup | 55 | 0.02 | 1.1e-03 | 5.51 | -5.6 | 1.7e-08 | -0.02 | 0.21 | 0.11 | FALSE |
150 | The Cancer Genome Atlas | Lung Adenocarcinoma | SPAG7 | 0.17 | 0.10 | blup | 46 | 0.11 | 2.4e-12 | 16.88 | 17.5 | 2.9e-68 | 0.82 | 0.12 | 0.88 | FALSE |
151 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | GP1BA | 0.07 | 0.06 | lasso | 3 | 0.06 | 3.8e-07 | 2.56 | 5.5 | 3.5e-08 | 0.44 | 0.96 | 0.04 | FALSE |
152 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | P2RX1 | 0.03 | 0.03 | lasso | 3 | 0.02 | 8.4e-04 | 5.51 | -5.6 | 2.4e-08 | 0.02 | 0.16 | 0.06 | FALSE |
153 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SPAG7 | 0.12 | 0.06 | lasso | 6 | 0.07 | 4.1e-08 | 16.88 | 17.6 | 1.3e-69 | 0.78 | 0.03 | 0.97 | FALSE |
154 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CRK | 0.13 | 0.00 | blup | 49 | 0.05 | 3.7e-03 | 4.56 | 5.7 | 1.2e-08 | 0.08 | 0.01 | 0.74 | TRUE |
155 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | PFN1 | 0.16 | 0.00 | blup | 47 | 0.03 | 2.7e-02 | 3.06 | -11.2 | 3.5e-29 | -0.64 | 0.01 | 0.29 | FALSE |
156 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GP1BA | 0.02 | 0.02 | blup | 49 | 0.02 | 9.3e-03 | 4.46 | 5.4 | 6.2e-08 | 0.36 | 0.05 | 0.16 | FALSE |
157 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MNT | 0.03 | 0.01 | enet | 7 | 0.02 | 1.7e-03 | -7.13 | -6.6 | 4.0e-11 | -0.03 | 0.09 | 0.10 | TRUE |
158 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SPAG7 | 0.22 | 0.06 | lasso | 4 | 0.10 | 3.7e-10 | 16.88 | 16.7 | 6.4e-63 | 0.74 | 0.88 | 0.11 | FALSE |
159 | The Cancer Genome Atlas | Rectum Adenocarcinoma | SLC25A11 | 0.57 | 0.02 | lasso | 4 | 0.12 | 9.8e-04 | 14.82 | 15.0 | 7.0e-51 | 0.47 | 0.01 | 0.21 | FALSE |
160 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | SRR | 0.16 | 0.03 | blup | 61 | 0.02 | 8.7e-02 | 1.77 | -9.5 | 2.6e-21 | -0.06 | 0.01 | 0.63 | FALSE |
161 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LOC284009 | 0.09 | 0.00 | blup | 59 | 0.00 | 2.3e-01 | 4.14 | -9.4 | 7.6e-21 | -0.04 | 0.02 | 0.21 | TRUE |
162 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SPAG7 | 0.22 | 0.06 | enet | 6 | 0.08 | 3.0e-06 | 20.30 | 19.6 | 3.8e-85 | 0.96 | 0.00 | 1.00 | TRUE |
163 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CHRNE | 0.09 | 0.04 | blup | 41 | 0.05 | 1.1e-02 | 0.63 | -5.1 | 2.9e-07 | -0.33 | 0.04 | 0.13 | FALSE |
164 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | PLD2 | 0.11 | 0.13 | lasso | 3 | 0.09 | 4.6e-04 | 7.48 | 8.1 | 5.4e-16 | 0.38 | 0.03 | 0.41 | FALSE |
165 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SGSM2 | 0.13 | 0.01 | blup | 81 | 0.01 | 1.1e-01 | -14.19 | 7.4 | 1.0e-13 | 0.03 | 0.01 | 0.67 | FALSE |
166 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SRR | 0.35 | 0.07 | enet | 11 | 0.14 | 1.1e-05 | -0.63 | 6.8 | 1.4e-11 | -0.01 | 0.25 | 0.04 | FALSE |
167 | The Cancer Genome Atlas | Thyroid Carcinoma | GP1BA | 0.05 | 0.02 | blup | 48 | 0.02 | 2.1e-03 | 3.79 | 7.4 | 1.4e-13 | 0.52 | 0.10 | 0.28 | FALSE |
168 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC284009 | 0.07 | 0.03 | lasso | 4 | 0.05 | 1.2e-05 | 4.17 | -5.6 | 2.5e-08 | -0.03 | 0.16 | 0.04 | FALSE |
169 | The Cancer Genome Atlas | Thyroid Carcinoma | P2RX1 | 0.05 | 0.00 | blup | 55 | 0.03 | 1.5e-03 | 5.51 | -6.7 | 2.5e-11 | 0.04 | 0.02 | 0.48 | TRUE |
170 | The Cancer Genome Atlas | Thyroid Carcinoma | PFN1 | 0.04 | 0.04 | lasso | 2 | 0.03 | 2.3e-04 | -7.76 | -7.6 | 3.3e-14 | -0.19 | 0.05 | 0.14 | FALSE |
171 | The Cancer Genome Atlas | Thyroid Carcinoma | PLD2 | 0.05 | 0.02 | enet | 8 | 0.02 | 1.9e-03 | 8.18 | 6.7 | 2.0e-11 | 0.27 | 0.10 | 0.05 | FALSE |
172 | The Cancer Genome Atlas | Thyroid Carcinoma | RABEP1 | 0.04 | 0.03 | enet | 5 | 0.03 | 1.5e-03 | -4.93 | -5.9 | 3.1e-09 | -0.05 | 0.26 | 0.47 | FALSE |
173 | The Cancer Genome Atlas | Thyroid Carcinoma | SPAG7 | 0.21 | 0.10 | blup | 47 | 0.13 | 1.7e-12 | 16.88 | 14.9 | 1.6e-50 | 0.73 | 0.00 | 1.00 | FALSE |
174 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | CHRNE | 0.21 | -0.01 | blup | 42 | 0.08 | 2.3e-03 | -8.22 | 14.0 | 2.2e-44 | 0.46 | 0.01 | 0.40 | FALSE |