177 significantly associated models · 58 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 752566 | 1916587 | 1 | 1 | 1.3e-07 | 3.3e-06 | 5.6e-01 | 98 | SCNN1D |
2 | 1 | 11181327 | 12600396 | 1 | 2 | 3.9e-10 | 2.4e-11 | 8.8e-02 | 94 | CLCN6 |
3 | 2 | 8934921 | 10394558 | 1 | 1 | 1.7e-08 | 1.5e-07 | 3.7e-01 | 97 | ADAM17 |
4 | 2 | 10886098 | 12295638 | 1 | 1 | 4.8e-08 | 7.0e-08 | 1.0e+00 | 100 | E2F6 |
5 | 3 | 122306920 | 123860565 | 2 | 1 | 1.4e-12 | 1.8e-11 | 2.7e-01 | 97 | ADCY5 |
6 | 3 | 140350567 | 141867638 | 1 | 1 | 6.0e-08 | 1.1e-07 | 1.0e+00 | 100 | ZBTB38 |
7 | 3 | 155070465 | 156966235 | 3 | 1 | 1.3e-21 | 3.5e-22 | 3.9e-02 | 95 | KCNAB1 |
8 | 4 | 17104059 | 18507692 | 1 | 1 | 3.9e-08 | 4.2e-08 | 2.9e-02 | 84 | DCAF16 |
9 | 4 | 105598022 | 107092169 | 1 | 1 | 1.6e-12 | 2.8e-16 | 4.1e-08 | 55 | PPA2 |
10 | 4 | 145203531 | 146706624 | 1 | 1 | 1.1e-09 | 2.5e-10 | 1.4e-02 | 85 | ANAPC10 |
11 | 6 | 34528785 | 36158878 | 5 | 3 | 4.3e-13 | 1.1e-12 | 5.5e-02 | 93 | C6orf126 TEAD3 ZNF76 |
12 | 8 | 22687572 | 24125172 | 1 | 1 | 1.0e-07 | 4.5e-07 | 6.7e-02 | 87 | SLC25A37 |
13 | 8 | 140969818 | 142706843 | 1 | 1 | 3.8e-09 | 8.9e-06 | 5.5e-01 | 98 | PTK2 |
14 | 10 | 70696908 | 71273696 | 2 | 1 | 2.2e-08 | 1.3e-10 | 7.4e-04 | 72 | SUPV3L1 |
15 | 10 | 95379543 | 96818402 | 1 | 3 | 2.2e-15 | 3.9e-14 | 1.0e+00 | 100 | NOC3L |
16 | 10 | 103905779 | 105647095 | 4 | 1 | 5.7e-08 | 9.1e-08 | 1.0e+00 | 100 | NT5C2 |
17 | 11 | 101228512 | 102802722 | 3 | 1 | 3.0e-11 | 8.7e-12 | 1.0e+00 | 100 | RP11-864G5.3 |
18 | 12 | 30084002 | 31526510 | 1 | 1 | 4.2e-10 | 2.4e-08 | 7.3e-01 | 100 | IPO8 |
19 | 15 | 74488424 | 76108550 | 2 | 1 | 8.0e-08 | 8.7e-07 | 6.7e-01 | 99 | MPI |
20 | 15 | 85227407 | 86990983 | 2 | 1 | 3.3e-09 | 1.3e-12 | 7.8e-05 | 69 | RP11-158M2.3 |
21 | 15 | 90718541 | 92135418 | 2 | 2 | 2.3e-15 | 7.7e-13 | 9.6e-02 | 95 | FES |
22 | 17 | 16718225 | 18194248 | 1 | 1 | 8.7e-08 | 2.6e-11 | 1.0e-06 | 46 | PEMT |
23 | 17 | 79298590 | 80694826 | 1 | 1 | 1.1e-08 | 6.9e-08 | 2.5e-01 | 95 | DCXR |
24 | 20 | 30984239 | 31508152 | 1 | 1 | 2.3e-07 | 1.1e-05 | 1.7e-04 | 27 | C20orf203 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Artery Tibial | 10 | 0.266 | 2.0 |
GTEx | Pituitary | 0 | 0.000 | 2.0 |
GTEx | Stomach | 2 | 0.138 | 2.0 |
GTEx | Uterus | 1 | 0.176 | 2.0 |
GTEx | Vagina | 0 | 0.000 | 2.0 |
GTEx | Adipose Subcutaneous | 6 | 0.172 | 1.9 |
GTEx | Adipose Visceral Omentum | 3 | 0.147 | 1.9 |
GTEx | Artery Aorta | 4 | 0.134 | 1.9 |
GTEx | Artery Coronary | 1 | 0.085 | 1.9 |
GTEx | Brain Cerebellar Hemisphere | 1 | 0.067 | 1.9 |
GTEx | Brain Cerebellum | 3 | 0.151 | 1.9 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.070 | 1.9 |
GTEx | Cells Transformed fibroblasts | 5 | 0.119 | 1.9 |
GTEx | Colon Sigmoid | 1 | 0.068 | 1.9 |
GTEx | Esophagus Gastroesophageal Junction | 1 | 0.069 | 1.9 |
GTEx | Esophagus Mucosa | 5 | 0.151 | 1.9 |
GTEx | Esophagus Muscularis | 4 | 0.124 | 1.9 |
GTEx | Lung | 6 | 0.209 | 1.9 |
GTEx | Ovary | 1 | 0.110 | 1.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 4 | 0.163 | 1.9 |
GTEx | Skin Sun Exposed Lower leg | 6 | 0.165 | 1.9 |
NTR | Blood | 3 | 0.125 | 1.9 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 2 | 0.182 | 1.9 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 4 | 0.147 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.226 | 1.9 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.9 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.9 |
GTEx | Adrenal Gland | 2 | 0.137 | 1.8 |
GTEx | Brain Caudate basal ganglia | 1 | 0.109 | 1.8 |
GTEx | Brain Cortex | 1 | 0.097 | 1.8 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.8 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.8 |
GTEx | Brain Hypothalamus | 1 | 0.169 | 1.8 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.8 |
GTEx | Breast Mammary Tissue | 2 | 0.101 | 1.8 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.8 |
GTEx | Breast Mammary Tissue (Female) | 3 | 0.182 | 1.8 |
GTEx | Colon Transverse | 2 | 0.097 | 1.8 |
GTEx | Heart Atrial Appendage | 3 | 0.190 | 1.8 |
GTEx | Heart Left Ventricle | 2 | 0.131 | 1.8 |
GTEx | Liver | 0 | 0.000 | 1.8 |
GTEx | Muscle Skeletal | 0 | 0.000 | 1.8 |
GTEx | Nerve Tibial | 9 | 0.208 | 1.8 |
GTEx | Pancreas | 1 | 0.061 | 1.8 |
GTEx | Prostate | 1 | 0.120 | 1.8 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.8 |
GTEx | Spleen | 3 | 0.213 | 1.8 |
GTEx | Testis | 2 | 0.063 | 1.8 |
GTEx | Thyroid | 3 | 0.075 | 1.8 |
GTEx | Whole Blood | 1 | 0.050 | 1.8 |
METSIM | Adipose | 6 | 0.130 | 1.8 |
ROSMAP | Brain Pre-frontal Cortex | 2 | 0.046 | 1.8 |
YFS | Blood | 4 | 0.087 | 1.8 |
CommonMind | Brain Pre-frontal Cortex | 9 | 0.167 | 1.8 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 3 | 0.181 | 1.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 6 | 0.136 | 1.8 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 1 | 0.024 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 1 | 0.049 | 1.8 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.8 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 5 | 0.170 | 1.8 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 2 | 0.120 | 1.8 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 3 | 0.065 | 1.8 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 1.8 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 2 | 0.156 | 1.8 |
The Cancer Genome Atlas | Thyroid Carcinoma | 6 | 0.116 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.145 | 1.7 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.023 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 2 | 0.080 | 1.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 1 | 0.063 | 1.7 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.7 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.6 |