519 significantly associated models · 140 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 66585659 | 68090386 | 1 | 1 | 1.5e-07 | 1.6e-07 | 1.0e+00 | 100 | WDR78 |
2 | 1 | 154282146 | 156572984 | 4 | 2 | 2.8e-14 | 3.6e-14 | 1.0e+00 | 100 | ADAM15 RIT1 |
3 | 1 | 160851894 | 162347618 | 1 | 1 | 9.8e-08 | 2.8e-05 | 3.5e-01 | 95 | FCGR2B |
4 | 1 | 204982713 | 206329620 | 3 | 1 | 1.5e-08 | 2.0e-07 | 2.0e-02 | 80 | NUCKS1 |
5 | 2 | 8850817 | 10394558 | 5 | 1 | 1.1e-16 | 1.4e-18 | 3.2e-04 | 83 | IAH1 |
6 | 2 | 37230728 | 37791321 | 1 | 1 | 2.3e-07 | 4.6e-07 | 1.3e-02 | 76 | PRKD3 |
7 | 2 | 160095086 | 161610478 | 1 | 1 | 2.2e-07 | 1.8e-06 | 8.6e-02 | 87 | PLA2R1 |
8 | 3 | 52242902 | 53860103 | 2 | 1 | 1.4e-09 | 4.1e-08 | 6.4e-01 | 99 | RFT1 |
9 | 3 | 122306920 | 123860565 | 2 | 1 | 1.6e-18 | 3.3e-24 | 2.5e-11 | 57 | RP11-797D24.4 |
10 | 3 | 141326602 | 142864702 | 1 | 1 | 1.0e-07 | 3.2e-07 | 3.1e-01 | 96 | XRN1 |
11 | 3 | 155695485 | 157118526 | 2 | 1 | 3.5e-46 | 7.1e-46 | 1.0e+00 | 100 | TIPARP |
12 | 3 | 182655858 | 184099956 | 1 | 1 | 1.3e-09 | 1.6e-08 | 9.2e-01 | 100 | KLHL24 |
13 | 4 | 17104059 | 18507692 | 2 | 1 | 9.3e-17 | 5.4e-18 | 2.0e-04 | 82 | DCAF16 |
14 | 4 | 145203531 | 146706624 | 1 | 1 | 6.2e-14 | 4.5e-16 | 1.0e-04 | 77 | ANAPC10 |
15 | 5 | 67264583 | 67845698 | 1 | 1 | 1.2e-07 | 9.1e-08 | 1.0e+00 | 100 | PIK3R1 |
16 | 6 | 34747603 | 36158878 | 2 | 2 | 9.6e-10 | 1.1e-12 | 5.2e-05 | 68 | C6orf126 TEAD3 |
17 | 6 | 87358929 | 88769878 | 1 | 1 | 4.6e-08 | 3.7e-07 | 2.1e-01 | 94 | C6orf163 |
18 | 6 | 108612536 | 110710018 | 5 | 2 | 1.7e-15 | 1.2e-15 | 1.0e+00 | 100 | RP11-425D10.10 SESN1 |
19 | 6 | 129638583 | 131163098 | 2 | 1 | 1.1e-07 | 3.2e-08 | 5.2e-02 | 88 | RP11-73O6.3 |
20 | 6 | 141924760 | 143456607 | 1 | 1 | 3.9e-10 | 1.3e-11 | 1.0e+00 | 100 | GPR126 |
21 | 7 | 2032803 | 3581391 | 2 | 1 | 1.5e-13 | 1.1e-13 | 1.3e-01 | 96 | GNA12 |
22 | 7 | 22946782 | 24382726 | 3 | 2 | 2.5e-11 | 9.1e-20 | 2.2e-07 | 68 | CCDC126 TRA2A |
23 | 7 | 45255940 | 46658015 | 1 | 1 | 7.1e-09 | 4.5e-10 | 2.0e-03 | 75 | IGFBP3 |
24 | 7 | 72674074 | 73803303 | 2 | 1 | 8.6e-10 | 2.7e-09 | 3.1e-02 | 87 | BCL7B |
25 | 7 | 106110799 | 107893695 | 2 | 1 | 2.1e-07 | 1.7e-06 | 3.6e-01 | 96 | COG5 |
26 | 7 | 126593467 | 128425768 | 1 | 1 | 1.4e-10 | 3.6e-10 | 2.1e-01 | 96 | SND1 |
27 | 8 | 40811597 | 42450441 | 1 | 1 | 7.7e-09 | 1.5e-09 | 1.0e+00 | 100 | ANK1 |
28 | 9 | 97520168 | 98975128 | 1 | 1 | 2.5e-13 | 8.3e-17 | 1.0e+00 | 100 | PTCH1 |
29 | 9 | 122817066 | 124681858 | 7 | 1 | 1.9e-09 | 3.4e-09 | 1.0e+00 | 100 | RAB14 |
30 | 9 | 124913308 | 126563910 | 2 | 1 | 2.5e-12 | 2.0e-12 | 2.0e-01 | 97 | RABGAP1 |
31 | 9 | 138525778 | 139943112 | 1 | 1 | 2.3e-08 | 1.9e-12 | 1.8e-05 | 63 | GPSM1 |
32 | 10 | 70251287 | 71665054 | 2 | 1 | 9.8e-16 | 6.1e-18 | 1.4e-03 | 86 | HKDC1 |
33 | 10 | 93657148 | 95151622 | 3 | 1 | 9.5e-12 | 8.3e-13 | 1.4e-02 | 88 | EIF2S2P3 |
34 | 10 | 101602004 | 103018321 | 1 | 1 | 2.3e-07 | 9.8e-06 | 3.2e-01 | 95 | HIF1AN |
35 | 10 | 103807817 | 106042502 | 9 | 2 | 5.3e-14 | 2.8e-15 | 1.5e-01 | 97 | C10orf26 CNNM2 |
36 | 10 | 115555541 | 116053000 | 1 | 1 | 1.1e-09 | 7.8e-15 | 2.4e-07 | 56 | ADRB1 |
37 | 10 | 123438113 | 124889817 | 1 | 1 | 1.0e-09 | 2.9e-09 | 1.0e+00 | 100 | PLEKHA1 |
38 | 11 | 1242690 | 2640824 | 4 | 3 | 2.6e-10 | 1.4e-12 | 1.2e-01 | 95 | C11orf21 IGF2 TNNT3 |
39 | 11 | 32208950 | 32707915 | 1 | 1 | 2.5e-07 | 1.6e-08 | 2.1e-02 | 83 | WIT1 |
40 | 11 | 64501991 | 66011280 | 2 | 1 | 4.4e-08 | 1.7e-07 | 1.7e-02 | 79 | LTBP3 |
41 | 11 | 68781070 | 70179848 | 1 | 1 | 2.9e-07 | 2.9e-07 | 1.0e+00 | 100 | ORAOV1 |
42 | 11 | 101284459 | 102802722 | 2 | 1 | 2.1e-08 | 4.1e-09 | 1.0e+00 | 100 | RP11-864G5.3 |
43 | 11 | 111051115 | 112491227 | 5 | 1 | 4.7e-08 | 4.4e-08 | 1.5e-02 | 80 | HSPB2 |
44 | 12 | 25789333 | 27681980 | 1 | 1 | 5.1e-10 | 5.5e-12 | 2.9e-03 | 81 | ITPR2 |
45 | 12 | 65930145 | 67328072 | 1 | 1 | 3.8e-08 | 1.0e-36 | 3.9e-30 | 19 | RBMS1P1 |
46 | 12 | 111102574 | 113517494 | 9 | 2 | 1.7e-10 | 4.8e-21 | 4.5e-06 | 76 | ADAM1A HECTD4 |
47 | 15 | 49216723 | 50623952 | 1 | 1 | 1.5e-07 | 1.0e-07 | 2.4e-01 | 95 | DTWD1 |
48 | 15 | 90712555 | 92135418 | 2 | 1 | 6.0e-10 | 3.2e-08 | 8.5e-01 | 100 | FES |
49 | 16 | 1605051 | 3015262 | 1 | 1 | 2.0e-07 | 7.4e-05 | 2.1e-01 | 90 | RNPS1 |
50 | 16 | 66947363 | 67446037 | 1 | 1 | 2.0e-07 | 1.3e-06 | 5.5e-01 | 98 | FBXL8 |
51 | 16 | 67651879 | 69084178 | 1 | 1 | 2.8e-07 | 5.7e-06 | 1.4e-01 | 90 | PRMT7 |
52 | 16 | 86743421 | 88216892 | 1 | 1 | 2.3e-07 | 1.2e-06 | 9.1e-01 | 100 | ZCCHC14 |
53 | 17 | 1517914 | 2918626 | 1 | 1 | 1.9e-07 | 1.7e-07 | 9.6e-02 | 90 | SRR |
54 | 17 | 6397773 | 8057572 | 14 | 1 | 2.9e-31 | 2.8e-27 | 3.6e-01 | 99 | C17orf81 |
55 | 17 | 25295032 | 26338912 | 2 | 1 | 1.4e-10 | 2.1e-11 | 6.1e-03 | 83 | RP11-173M1.8 |
56 | 19 | 54004939 | 55427510 | 2 | 2 | 2.1e-09 | 1.9e-07 | 1.0e-01 | 90 | CTD-3093M3.1 RPS9 |
57 | 20 | 30591354 | 32140287 | 2 | 1 | 1.2e-15 | 3.1e-15 | 3.6e-03 | 86 | COMMD7 |
58 | 20 | 56567724 | 57961572 | 1 | 1 | 1.4e-07 | 4.2e-07 | 4.1e-01 | 97 | STX16-NPEPL1 |
59 | 20 | 62337406 | 62836520 | 1 | 1 | 4.8e-09 | 6.6e-07 | 1.3e-01 | 91 | UCKL1AS |
60 | 22 | 28792887 | 30261219 | 1 | 1 | 4.2e-09 | 8.7e-09 | 1.0e+00 | 100 | KREMEN1 |
61 | 22 | 46185873 | 46688208 | 1 | 1 | 2.7e-07 | 1.6e-07 | 2.8e-03 | 67 | LOC100271722 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Artery Coronary | 7 | 0.59 | 2.4 |
GTEx | Colon Sigmoid | 6 | 0.41 | 2.4 |
GTEx | Adrenal Gland | 7 | 0.48 | 2.3 |
GTEx | Artery Tibial | 11 | 0.29 | 2.3 |
GTEx | Esophagus Gastroesophageal Junction | 5 | 0.35 | 2.3 |
GTEx | Liver | 4 | 0.56 | 2.3 |
GTEx | Muscle Skeletal | 10 | 0.35 | 2.3 |
GTEx | Pituitary | 3 | 0.27 | 2.3 |
GTEx | Prostate | 6 | 0.72 | 2.3 |
GTEx | Skin Not Sun Exposed Suprapubic | 7 | 0.28 | 2.3 |
GTEx | Skin Sun Exposed Lower leg | 16 | 0.44 | 2.3 |
GTEx | Small Intestine Terminal Ileum | 3 | 0.65 | 2.3 |
GTEx | Spleen | 10 | 0.71 | 2.3 |
GTEx | Stomach | 7 | 0.48 | 2.3 |
GTEx | Testis | 13 | 0.41 | 2.3 |
GTEx | Whole Blood | 5 | 0.25 | 2.3 |
NTR | Blood | 13 | 0.54 | 2.3 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.27 | 2.3 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.29 | 2.3 |
GTEx | Adipose Subcutaneous | 15 | 0.43 | 2.2 |
GTEx | Adipose Visceral Omentum | 7 | 0.34 | 2.2 |
GTEx | Artery Aorta | 14 | 0.47 | 2.2 |
GTEx | Brain Caudate basal ganglia | 4 | 0.43 | 2.2 |
GTEx | Brain Cerebellar Hemisphere | 4 | 0.27 | 2.2 |
GTEx | Brain Cerebellum | 3 | 0.15 | 2.2 |
GTEx | Brain Frontal Cortex BA9 | 4 | 0.43 | 2.2 |
GTEx | Brain Hippocampus | 4 | 0.76 | 2.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 2 | 0.23 | 2.2 |
GTEx | Brain Putamen basal ganglia | 3 | 0.48 | 2.2 |
GTEx | Breast Mammary Tissue | 7 | 0.35 | 2.2 |
GTEx | Breast Mammary Tissue (Male) | 5 | 0.42 | 2.2 |
GTEx | Cells EBV-transformed lymphocytes | 3 | 0.21 | 2.2 |
GTEx | Colon Transverse | 8 | 0.39 | 2.2 |
GTEx | Esophagus Mucosa | 9 | 0.27 | 2.2 |
GTEx | Esophagus Muscularis | 12 | 0.37 | 2.2 |
GTEx | Heart Atrial Appendage | 4 | 0.25 | 2.2 |
GTEx | Heart Left Ventricle | 4 | 0.26 | 2.2 |
GTEx | Lung | 6 | 0.21 | 2.2 |
GTEx | Nerve Tibial | 14 | 0.32 | 2.2 |
GTEx | Pancreas | 5 | 0.31 | 2.2 |
GTEx | Thyroid | 12 | 0.30 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 17 | 0.39 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 4 | 0.24 | 2.2 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 10 | 0.23 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.27 | 2.2 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 6 | 0.29 | 2.2 |
The Cancer Genome Atlas | Esophageal Carcinoma | 2 | 0.29 | 2.2 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 7 | 0.26 | 2.2 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 18 | 0.42 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 5 | 0.30 | 2.2 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 5 | 0.30 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 4 | 0.31 | 2.2 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.20 | 2.2 |
GTEx | Brain Cortex | 3 | 0.29 | 2.1 |
GTEx | Cells Transformed fibroblasts | 15 | 0.36 | 2.1 |
GTEx | Ovary | 3 | 0.33 | 2.1 |
GTEx | Uterus | 1 | 0.18 | 2.1 |
GTEx | Vagina | 4 | 0.63 | 2.1 |
METSIM | Adipose | 16 | 0.35 | 2.1 |
YFS | Blood | 15 | 0.32 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 15 | 0.28 | 2.1 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 5 | 0.49 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.20 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 8 | 0.27 | 2.1 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 6 | 0.24 | 2.1 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 6 | 0.45 | 2.1 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 12 | 0.26 | 2.1 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.37 | 2.1 |
The Cancer Genome Atlas | Thyroid Carcinoma | 15 | 0.29 | 2.1 |
GTEx | Brain Hypothalamus | 1 | 0.17 | 2.0 |
GTEx | Breast Mammary Tissue (Female) | 3 | 0.18 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 12 | 0.29 | 2.0 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 2 | 0.13 | 2.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.19 | 2.0 |