999 significantly associated models · 238 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 2235672 | 2742491 | 2 | 1 | 2.0e-09 | 4.1e-13 | 6.0e-06 | 61 | TNFRSF14 |
2 | 1 | 7686056 | 9637591 | 4 | 1 | 1.2e-12 | 8.0e-12 | 1.0e+00 | 100 | RP5-1115A15.1 |
3 | 1 | 24372971 | 25768937 | 1 | 1 | 1.7e-07 | 5.2e-12 | 1.3e-07 | 41 | CLIC4 |
4 | 1 | 151313774 | 152712747 | 4 | 8 | 7.4e-20 | 1.8e-19 | 0.0e+00 | -4170 | LINGO4 S100A11 TDRKH THEM4 |
5 | 1 | 153225886 | 155138557 | 3 | 2 | 9.3e-12 | 5.8e-14 | 9.7e-04 | 81 | C1orf43 IL6R |
6 | 1 | 160452218 | 161885352 | 4 | 1 | 2.5e-09 | 1.4e-09 | 1.6e-01 | 94 | PPOX |
7 | 1 | 166702558 | 168182443 | 1 | 1 | 2.4e-17 | 1.6e-18 | 1.0e+00 | 100 | CD247 |
8 | 1 | 172311679 | 173713130 | 2 | 1 | 2.5e-13 | 3.7e-13 | 1.0e+00 | 100 | TNFSF4 |
9 | 2 | 27971195 | 29344127 | 1 | 1 | 2.0e-13 | 2.2e-09 | 2.5e-01 | 96 | RP11-373D23.3 |
10 | 2 | 29976100 | 31563885 | 1 | 1 | 9.6e-08 | 5.1e-07 | 9.3e-01 | 100 | LCLAT1 |
11 | 2 | 60466491 | 62123953 | 9 | 1 | 6.4e-10 | 4.7e-08 | 2.8e-02 | 84 | AC010733.5 |
12 | 2 | 101994731 | 103767612 | 5 | 4 | 4.4e-61 | 1.7e-54 | 1.0e+00 | 100 | IL18RAP IL1RL1 IL1RL2 |
13 | 2 | 143154021 | 145209076 | 1 | 1 | 2.6e-08 | 9.9e-12 | 3.7e-05 | 63 | ARHGAP15 |
14 | 2 | 197134790 | 200117777 | 6 | 1 | 1.7e-15 | 1.4e-14 | 2.0e-03 | 84 | SF3B1 |
15 | 2 | 228433917 | 229037885 | 2 | 1 | 4.4e-12 | 4.2e-11 | 6.1e-02 | 92 | CCL20 |
16 | 2 | 241978472 | 243048760 | 7 | 2 | 1.2e-19 | 1.8e-20 | 3.0e-01 | 99 | AC114730.7 D2HGDH |
17 | 3 | 120799666 | 122356172 | 4 | 1 | 2.5e-12 | 2.2e-12 | 1.0e+00 | 100 | SLC15A2 |
18 | 3 | 140350567 | 141867638 | 1 | 1 | 3.0e-09 | 9.8e-10 | 1.0e+00 | 100 | ZBTB38 |
19 | 3 | 195746112 | 197161849 | 1 | 1 | 4.1e-08 | 3.3e-06 | 1.1e-04 | 31 | PIGX |
20 | 4 | 38079294 | 39824758 | 5 | 2 | 1.1e-67 | 5.6e-73 | 2.9e-05 | 95 | TLR1 TLR6 |
21 | 4 | 102736456 | 104627833 | 3 | 1 | 6.4e-11 | 9.5e-10 | 7.6e-01 | 100 | NFKB1 |
22 | 4 | 122377715 | 124935698 | 2 | 5 | 1.7e-35 | 9.6e-30 | 1.5e-01 | 98 | KIAA1109 SPATA5 |
23 | 5 | 34920257 | 36848558 | 5 | 10 | 1.1e-41 | 4.5e-45 | 1.0e+00 | 100 | CAPSL IL7R LMBRD2 SPEF2 UGT3A2 |
24 | 5 | 108927715 | 111770880 | 6 | 10 | 4.4e-42 | 8.7e-55 | NaN | NaN | CAMK4 SLC25A46 TSLP WDR36 |
25 | 5 | 130830617 | 132900729 | 13 | 3 | 2.5e-10 | 6.3e-11 | 5.9e-01 | 99 | IRF1 KIF3A SLC22A5 |
26 | 5 | 140298815 | 142230251 | 2 | 2 | 7.0e-09 | 1.1e-07 | 4.7e-01 | 98 | AC008781.7 NDFIP1 |
27 | 5 | 176539212 | 177047009 | 1 | 1 | 3.7e-08 | 1.9e-07 | 3.5e-01 | 97 | RGS14 |
28 | 6 | 25266147 | 26689223 | 3 | 1 | 6.9e-13 | 1.2e-12 | 5.3e-02 | 93 | U91328.19 |
29 | 6 | 33745071 | 35200350 | 1 | 1 | 1.8e-07 | 7.8e-09 | 5.1e-08 | 11 | PACSIN1 |
30 | 6 | 89941356 | 91704536 | 1 | 1 | 8.3e-12 | 1.3e-12 | 5.2e-03 | 84 | BACH2 |
31 | 6 | 134905567 | 136516257 | 2 | 1 | 5.3e-10 | 2.5e-10 | 3.3e-02 | 89 | AHI1 |
32 | 7 | 27623776 | 28468319 | 1 | 2 | 4.7e-10 | 2.2e-17 | 8.7e-06 | 72 | JAZF1 |
33 | 7 | 76254810 | 77744459 | 1 | 1 | 1.7e-07 | 1.1e-09 | 1.1e-03 | 71 | GSAP |
34 | 7 | 140009905 | 141413051 | 1 | 1 | 5.4e-08 | 1.3e-06 | 9.6e-01 | 100 | MRPS33 |
35 | 9 | 5091675 | 7345304 | 3 | 2 | 8.4e-17 | 2.7e-18 | 7.1e-09 | 56 | GLDC RANBP6 |
36 | 9 | 122881960 | 124487495 | 6 | 1 | 5.2e-14 | 9.1e-14 | 1.0e+00 | 100 | TRAF1 |
37 | 9 | 126321003 | 127872298 | 2 | 1 | 7.4e-10 | 1.1e-09 | 1.0e+00 | 100 | NEK6 |
38 | 10 | 5238196 | 6801162 | 2 | 2 | 5.9e-11 | 5.1e-23 | 1.2e-15 | 34 | IL2RA |
39 | 10 | 103527782 | 105647095 | 10 | 1 | 1.7e-13 | 1.0e-11 | 4.0e-01 | 98 | WBP1L |
40 | 11 | 36068766 | 36732916 | 1 | 1 | 2.5e-10 | 5.7e-07 | 8.8e-03 | 73 | PRR5L |
41 | 11 | 64669105 | 66456387 | 12 | 2 | 7.5e-13 | 3.3e-17 | 3.2e-04 | 82 | EFEMP2 OVOL1 |
42 | 11 | 75453877 | 77069746 | 3 | 1 | 6.2e-36 | 4.8e-57 | 2.0e-25 | 57 | LRRC32 |
43 | 11 | 110721187 | 112335631 | 3 | 1 | 3.8e-13 | 2.3e-14 | 1.0e+00 | 100 | SIK2 |
44 | 12 | 50110317 | 50601155 | 1 | 1 | 6.2e-09 | 7.7e-08 | 1.8e-01 | 94 | AQP5 |
45 | 12 | 55677395 | 58222672 | 10 | 3 | 2.6e-19 | 1.3e-21 | 1.8e-01 | 98 | GPR182 STAT6 SUOX |
46 | 12 | 111645043 | 113036817 | 1 | 1 | 1.0e-07 | 1.3e-15 | 1.5e-10 | 36 | ADAM1A |
47 | 12 | 120502726 | 122873570 | 2 | 1 | 3.1e-10 | 3.1e-10 | 1.0e+00 | 100 | SPPL3 |
48 | 12 | 122942185 | 124424636 | 2 | 2 | 2.5e-08 | 2.3e-07 | 4.8e-01 | 98 | MLXIP MPHOSPH9 |
49 | 13 | 40440805 | 41928314 | 2 | 1 | 3.3e-17 | 4.8e-13 | 6.6e-03 | 86 | FOXO1 |
50 | 13 | 72661114 | 74288499 | 1 | 1 | 4.1e-09 | 4.0e-11 | 2.3e-05 | 59 | PIBF1 |
51 | 13 | 99603738 | 100287551 | 1 | 1 | 1.6e-08 | 5.1e-08 | 7.9e-03 | 76 | UBAC2 |
52 | 14 | 34820295 | 36440325 | 3 | 1 | 1.3e-11 | 1.2e-10 | 7.4e-02 | 92 | FAM177A1 |
53 | 14 | 102544860 | 104074810 | 1 | 1 | 1.6e-09 | 2.8e-11 | 1.3e-07 | 37 | TRAF3 |
54 | 15 | 40778506 | 42749023 | 9 | 1 | 3.0e-11 | 1.6e-12 | 1.1e-03 | 79 | NDUFAF1 |
55 | 15 | 66662107 | 68183665 | 1 | 1 | 1.3e-16 | 2.6e-21 | 3.7e-06 | 76 | SMAD3 |
56 | 15 | 89921477 | 91886448 | 4 | 2 | 1.1e-22 | 1.1e-19 | 4.1e-03 | 90 | IQGAP1 ZNF774 |
57 | 16 | 10325245 | 12138068 | 6 | 7 | 2.6e-27 | 1.2e-34 | NaN | NaN | CLEC16A DEXI RMI2 RP11-396B14.2 RP11-876N24.5 |
58 | 17 | 36710513 | 39502398 | 19 | 9 | 1.3e-23 | 7.1e-22 | 1.0e+00 | 100 | CASC3 GSDMA MED24 MSL1 ORMDL3 SMARCE1 THRA |
59 | 17 | 39993748 | 41538783 | 7 | 1 | 9.7e-11 | 2.4e-08 | 4.1e-01 | 98 | NAGLU |
60 | 17 | 42628193 | 43570226 | 3 | 1 | 1.5e-08 | 1.3e-09 | 1.0e+00 | 100 | C17orf46 |
61 | 17 | 47119135 | 47685050 | 1 | 1 | 1.0e-08 | 1.1e-09 | 3.1e-02 | 88 | ZNF652 |
62 | 18 | 51100222 | 52540420 | 1 | 1 | 7.7e-08 | 7.7e-08 | 1.0e+00 | 100 | POLI |
63 | 20 | 51935779 | 52456445 | 1 | 1 | 8.4e-11 | 1.0e-15 | 6.3e-09 | 48 | ZNF217 |
64 | 20 | 61522825 | 62912463 | 7 | 1 | 7.2e-10 | 8.2e-10 | 1.0e-01 | 93 | STMN3 |
65 | 22 | 21075537 | 22685340 | 4 | 1 | 2.8e-09 | 2.7e-09 | 1.0e+00 | 100 | CCDC116 |
66 | 22 | 41606030 | 42109917 | 1 | 1 | 1.8e-07 | 7.4e-07 | 2.8e-01 | 95 | PHF5A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 5 | 0.98 | 2.6 |
YFS | Blood | 35 | 0.76 | 2.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 14 | 1.09 | 2.4 |
GTEx | Brain Cortex | 9 | 0.87 | 2.3 |
GTEx | Brain Nucleus accumbens basal ganglia | 8 | 0.92 | 2.3 |
GTEx | Breast Mammary Tissue | 16 | 0.81 | 2.3 |
GTEx | Breast Mammary Tissue (Female) | 13 | 0.79 | 2.3 |
GTEx | Esophagus Mucosa | 21 | 0.63 | 2.3 |
GTEx | Pancreas | 14 | 0.86 | 2.3 |
GTEx | Testis | 22 | 0.70 | 2.3 |
GTEx | Whole Blood | 17 | 0.85 | 2.3 |
NTR | Blood | 20 | 0.83 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 15 | 0.55 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 23 | 0.56 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 15 | 0.73 | 2.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 20 | 0.80 | 2.3 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 12 | 0.75 | 2.3 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 16 | 0.96 | 2.3 |
GTEx | Adipose Subcutaneous | 21 | 0.60 | 2.2 |
GTEx | Adipose Visceral Omentum | 13 | 0.64 | 2.2 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.54 | 2.2 |
GTEx | Brain Hypothalamus | 4 | 0.68 | 2.2 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 2.2 |
GTEx | Breast Mammary Tissue (Male) | 8 | 0.67 | 2.2 |
GTEx | Cells Transformed fibroblasts | 31 | 0.74 | 2.2 |
GTEx | Colon Sigmoid | 10 | 0.68 | 2.2 |
GTEx | Colon Transverse | 14 | 0.68 | 2.2 |
GTEx | Esophagus Gastroesophageal Junction | 10 | 0.69 | 2.2 |
GTEx | Esophagus Muscularis | 23 | 0.71 | 2.2 |
GTEx | Heart Atrial Appendage | 7 | 0.44 | 2.2 |
GTEx | Liver | 4 | 0.56 | 2.2 |
GTEx | Skin Not Sun Exposed Suprapubic | 18 | 0.73 | 2.2 |
GTEx | Spleen | 11 | 0.78 | 2.2 |
GTEx | Thyroid | 32 | 0.80 | 2.2 |
GTEx | Uterus | 5 | 0.88 | 2.2 |
METSIM | Adipose | 26 | 0.56 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 24 | 0.55 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 10 | 0.60 | 2.2 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 27 | 0.61 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 7 | 0.64 | 2.2 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 7 | 0.68 | 2.2 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 25 | 0.58 | 2.2 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.27 | 2.2 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 15 | 0.51 | 2.2 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 12 | 0.71 | 2.2 |
The Cancer Genome Atlas | Thyroid Carcinoma | 38 | 0.74 | 2.2 |
GTEx | Artery Aorta | 15 | 0.50 | 2.1 |
GTEx | Artery Coronary | 5 | 0.42 | 2.1 |
GTEx | Artery Tibial | 20 | 0.53 | 2.1 |
GTEx | Brain Cerebellar Hemisphere | 9 | 0.60 | 2.1 |
GTEx | Brain Cerebellum | 11 | 0.55 | 2.1 |
GTEx | Lung | 21 | 0.73 | 2.1 |
GTEx | Muscle Skeletal | 16 | 0.55 | 2.1 |
GTEx | Nerve Tibial | 19 | 0.44 | 2.1 |
GTEx | Ovary | 7 | 0.77 | 2.1 |
GTEx | Pituitary | 9 | 0.81 | 2.1 |
GTEx | Prostate | 5 | 0.60 | 2.1 |
GTEx | Skin Sun Exposed Lower leg | 23 | 0.63 | 2.1 |
GTEx | Vagina | 2 | 0.31 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 27 | 0.50 | 2.1 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 11 | 0.53 | 2.1 |
The Cancer Genome Atlas | Esophageal Carcinoma | 5 | 0.73 | 2.1 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.60 | 2.1 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 26 | 0.56 | 2.1 |
GTEx | Adrenal Gland | 8 | 0.55 | 2.0 |
GTEx | Cells EBV-transformed lymphocytes | 7 | 0.49 | 2.0 |
GTEx | Small Intestine Terminal Ileum | 3 | 0.65 | 2.0 |
GTEx | Stomach | 7 | 0.48 | 2.0 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.72 | 2.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 4 | 0.37 | 2.0 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 5 | 0.93 | 2.0 |
GTEx | Brain Caudate basal ganglia | 3 | 0.33 | 1.9 |
GTEx | Brain Hippocampus | 2 | 0.38 | 1.9 |
GTEx | Heart Left Ventricle | 5 | 0.33 | 1.9 |