710 significantly associated models · 166 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7715776 | 11137778 | 5 | 2 | 3.1e-09 | 4.1e-09 | 9.8e-02 | 92 | KIF1B RERE |
2 | 1 | 151055670 | 152712747 | 3 | 6 | 4.6e-12 | 1.8e-13 | 1.0e+00 | 100 | LINGO4 S100A11 TDRKH |
3 | 1 | 166702558 | 168182443 | 1 | 1 | 3.0e-12 | 2.0e-12 | 1.0e+00 | 100 | CD247 |
4 | 1 | 172311679 | 173713130 | 2 | 1 | 3.6e-08 | 4.4e-08 | 3.6e-09 | -16 | TNFSF4 |
5 | 1 | 202888496 | 203393566 | 1 | 1 | 5.9e-09 | 1.1e-08 | 1.0e+00 | 100 | MYBPH |
6 | 2 | 99922967 | 100994580 | 1 | 1 | 1.9e-07 | 4.8e-08 | 3.9e-02 | 86 | AFF3 |
7 | 2 | 101994731 | 104027106 | 6 | 8 | 9.8e-63 | 9.1e-51 | NaN | NaN | IL18R1 IL1R1 IL1RL1 SLC9A2 |
8 | 2 | 241941773 | 243048760 | 8 | 3 | 1.4e-24 | 4.6e-25 | 2.9e-01 | 99 | D2HGDH ING5 |
9 | 3 | 127097277 | 128533990 | 2 | 1 | 9.6e-09 | 6.9e-08 | 3.8e-01 | 97 | EEFSEC |
10 | 4 | 38097478 | 39643536 | 4 | 1 | 4.1e-14 | 3.6e-15 | 4.0e-03 | 87 | TLR1 |
11 | 4 | 122377715 | 123976639 | 1 | 1 | 3.6e-17 | 4.3e-14 | 7.6e-03 | 88 | KIAA1109 |
12 | 5 | 35608310 | 36124514 | 1 | 1 | 6.1e-08 | 3.9e-08 | 1.0e+00 | 100 | IL7R |
13 | 5 | 109381583 | 111527482 | 5 | 7 | 4.0e-21 | 8.1e-40 | NaN | NaN | SLC25A46 TMEM232 TSLP |
14 | 5 | 130588008 | 132900729 | 16 | 7 | 3.8e-23 | 2.7e-25 | NaN | NaN | AC034220.3 KIF3A P4HA2-AS1 SLC22A5 |
15 | 5 | 140789933 | 142230251 | 1 | 1 | 1.1e-09 | 2.9e-09 | 1.6e-02 | 84 | NDFIP1 |
16 | 5 | 156131251 | 157697754 | 1 | 1 | 1.2e-09 | 1.3e-09 | 9.4e-04 | 70 | ADAM19 |
17 | 6 | 25266147 | 26682323 | 1 | 1 | 1.6e-07 | 8.0e-10 | 1.0e-06 | 37 | TRIM38 |
18 | 6 | 34528785 | 35987507 | 3 | 1 | 2.1e-08 | 1.1e-09 | 7.4e-03 | 81 | ZNF76 |
19 | 6 | 63986735 | 64534000 | 1 | 1 | 3.5e-08 | 1.7e-08 | 8.5e-02 | 91 | PTP4A1 |
20 | 6 | 89941356 | 91704536 | 1 | 2 | 7.0e-18 | 3.7e-27 | 3.7e-07 | 78 | BACH2 |
21 | 6 | 134905567 | 136516257 | 2 | 2 | 2.0e-13 | 2.5e-09 | 7.1e-01 | 100 | AHI1 |
22 | 7 | 27623776 | 28468319 | 1 | 1 | 5.8e-08 | 1.2e-13 | 3.4e-07 | 53 | JAZF1 |
23 | 9 | 4934896 | 7345375 | 5 | 3 | 5.5e-28 | 1.5e-56 | 1.4e-22 | 62 | GLDC KIAA1432 RANBP6 |
24 | 10 | 74879374 | 76266883 | 1 | 1 | 1.4e-07 | 4.0e-05 | 2.9e-01 | 93 | RP11-574K11.5 |
25 | 10 | 93657148 | 95110026 | 1 | 1 | 1.3e-07 | 1.7e-08 | 9.8e-03 | 79 | KIF11 |
26 | 11 | 60839578 | 62346131 | 6 | 1 | 3.8e-11 | 3.3e-11 | 3.9e-02 | 90 | FADS1 |
27 | 11 | 64845438 | 66333072 | 4 | 1 | 3.6e-09 | 2.5e-10 | 1.7e-05 | 54 | EFEMP2 |
28 | 11 | 75678647 | 77069746 | 1 | 1 | 2.6e-25 | 2.4e-44 | 7.9e-22 | 53 | LRRC32 |
29 | 11 | 110776537 | 112287801 | 1 | 1 | 7.6e-09 | 1.1e-09 | 1.0e+00 | 100 | SIK2 |
30 | 12 | 5809999 | 6956462 | 1 | 1 | 2.0e-07 | 1.6e-07 | 1.1e-01 | 91 | RP1-102E24.8 |
31 | 12 | 47407397 | 48825686 | 1 | 1 | 6.5e-08 | 6.5e-06 | 1.5e-02 | 71 | RP1-197B17.3 |
32 | 12 | 55601472 | 58677299 | 12 | 4 | 6.1e-17 | 1.6e-23 | 1.4e-02 | 94 | GPR182 KIF5A RPS26 STAT6 |
33 | 12 | 120502726 | 122037099 | 1 | 1 | 1.3e-08 | 6.7e-08 | 5.1e-02 | 87 | SPPL3 |
34 | 13 | 99047988 | 100728229 | 3 | 3 | 2.7e-13 | 6.1e-17 | 3.9e-02 | 94 | UBAC2 |
35 | 14 | 92733536 | 93401178 | 1 | 1 | 1.9e-09 | 1.0e-05 | 8.4e-03 | 64 | RIN3 |
36 | 15 | 66662107 | 68789191 | 4 | 4 | 5.2e-32 | 8.5e-37 | 6.5e-04 | 93 | IQCH SMAD3 |
37 | 16 | 10325245 | 12010444 | 5 | 2 | 4.9e-19 | 2.3e-26 | 8.8e-07 | 79 | CLEC16A RP11-396B14.2 |
38 | 16 | 26518263 | 28065536 | 5 | 2 | 3.3e-13 | 2.0e-12 | 9.0e-04 | 78 | CTD-3203P2.1 IL4R |
39 | 17 | 36710513 | 39068227 | 24 | 9 | 7.6e-52 | 1.4e-50 | 1.0e+00 | 100 | CASC3 GSDMA KRT222 MED24 ORMDL3 |
40 | 17 | 39993748 | 41538783 | 4 | 1 | 6.4e-08 | 1.1e-07 | 4.4e-05 | 41 | RP11-400F19.8 |
41 | 17 | 42624404 | 43570226 | 1 | 1 | 3.4e-09 | 3.6e-09 | 8.8e-03 | 80 | CTD-2020K17.3 |
42 | 17 | 46581184 | 48139500 | 2 | 1 | 2.4e-14 | 5.9e-16 | 3.0e-03 | 86 | ZNF652 |
43 | 18 | 51553172 | 52058680 | 1 | 1 | 1.4e-07 | 3.1e-06 | 4.1e-01 | 97 | POLI |
44 | 19 | 15771809 | 17268784 | 1 | 1 | 1.3e-07 | 7.8e-06 | 3.6e-03 | 58 | EPS15L1 |
45 | 19 | 45585167 | 46994833 | 3 | 1 | 7.6e-09 | 1.0e-09 | 4.0e-02 | 89 | DMWD |
46 | 19 | 52049899 | 52574723 | 1 | 1 | 3.0e-07 | 1.5e-05 | 3.1e-04 | 31 | FPR3 |
47 | 20 | 62024275 | 62614338 | 2 | 1 | 4.5e-08 | 2.9e-06 | 8.5e-01 | 100 | STMN3 |
48 | 22 | 41071659 | 42685537 | 7 | 1 | 3.1e-08 | 8.0e-08 | 4.9e-01 | 98 | PHF5A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Whole Blood | 13 | 0.652 | 2.3 |
GTEx | Breast Mammary Tissue (Male) | 6 | 0.503 | 2.2 |
GTEx | Pancreas | 8 | 0.490 | 2.2 |
GTEx | Spleen | 10 | 0.709 | 2.2 |
NTR | Blood | 15 | 0.624 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 17 | 0.678 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 9 | 0.542 | 2.2 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 9 | 0.534 | 2.2 |
GTEx | Artery Tibial | 20 | 0.532 | 2.1 |
GTEx | Brain Cortex | 9 | 0.870 | 2.1 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.809 | 2.1 |
GTEx | Brain Putamen basal ganglia | 3 | 0.481 | 2.1 |
GTEx | Breast Mammary Tissue | 10 | 0.507 | 2.1 |
GTEx | Cells Transformed fibroblasts | 22 | 0.524 | 2.1 |
GTEx | Colon Transverse | 11 | 0.533 | 2.1 |
GTEx | Heart Atrial Appendage | 7 | 0.443 | 2.1 |
GTEx | Skin Sun Exposed Lower leg | 18 | 0.495 | 2.1 |
GTEx | Thyroid | 19 | 0.475 | 2.1 |
YFS | Blood | 24 | 0.520 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 21 | 0.512 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 9 | 0.439 | 2.1 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.452 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 14 | 0.477 | 2.1 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 6 | 0.868 | 2.1 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 8 | 0.625 | 2.1 |
The Cancer Genome Atlas | Thyroid Carcinoma | 28 | 0.543 | 2.1 |
GTEx | Adipose Visceral Omentum | 8 | 0.393 | 2.0 |
GTEx | Artery Aorta | 14 | 0.470 | 2.0 |
GTEx | Brain Cerebellar Hemisphere | 5 | 0.336 | 2.0 |
GTEx | Brain Cerebellum | 6 | 0.303 | 2.0 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.541 | 2.0 |
GTEx | Brain Hypothalamus | 2 | 0.339 | 2.0 |
GTEx | Colon Sigmoid | 5 | 0.342 | 2.0 |
GTEx | Esophagus Mucosa | 15 | 0.452 | 2.0 |
GTEx | Esophagus Muscularis | 13 | 0.402 | 2.0 |
GTEx | Lung | 10 | 0.348 | 2.0 |
GTEx | Muscle Skeletal | 14 | 0.484 | 2.0 |
GTEx | Nerve Tibial | 15 | 0.347 | 2.0 |
GTEx | Ovary | 5 | 0.551 | 2.0 |
GTEx | Pituitary | 6 | 0.538 | 2.0 |
GTEx | Skin Not Sun Exposed Suprapubic | 17 | 0.691 | 2.0 |
GTEx | Testis | 16 | 0.507 | 2.0 |
METSIM | Adipose | 19 | 0.412 | 2.0 |
ROSMAP | Brain Pre-frontal Cortex | 20 | 0.455 | 2.0 |
CommonMind | Brain Pre-frontal Cortex | 22 | 0.409 | 2.0 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 6 | 0.363 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 11 | 0.533 | 2.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 9 | 0.331 | 2.0 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.374 | 2.0 |
GTEx | Adipose Subcutaneous | 9 | 0.258 | 1.9 |
GTEx | Breast Mammary Tissue (Female) | 6 | 0.365 | 1.9 |
GTEx | Cells EBV-transformed lymphocytes | 6 | 0.422 | 1.9 |
GTEx | Esophagus Gastroesophageal Junction | 5 | 0.346 | 1.9 |
GTEx | Liver | 3 | 0.418 | 1.9 |
GTEx | Prostate | 4 | 0.479 | 1.9 |
GTEx | Stomach | 5 | 0.344 | 1.9 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 21 | 0.477 | 1.9 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.438 | 1.9 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 7 | 0.685 | 1.9 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 17 | 0.395 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.226 | 1.9 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 15 | 0.324 | 1.9 |
GTEx | Adrenal Gland | 5 | 0.343 | 1.8 |
GTEx | Brain Caudate basal ganglia | 3 | 0.326 | 1.8 |
GTEx | Heart Left Ventricle | 5 | 0.327 | 1.8 |
GTEx | Uterus | 1 | 0.176 | 1.8 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.456 | 1.8 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 6 | 0.377 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.187 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.394 | 1.8 |
GTEx | Artery Coronary | 1 | 0.085 | 1.7 |
GTEx | Brain Hippocampus | 2 | 0.382 | 1.7 |
GTEx | Small Intestine Terminal Ileum | 1 | 0.217 | 1.7 |
GTEx | Vagina | 0 | 0.000 | 1.7 |