207 significantly associated models · 49 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 209867116 | 210585575 | 1 | 1 | 2.5e-07 | 2.0e-07 | 1.0e+00 | 100 | SYT14 |
2 | 3 | 35439546 | 36079910 | 1 | 1 | 1.8e-10 | 7.0e-13 | 3.6e-04 | 75 | ARPP21 |
3 | 3 | 135273949 | 137261517 | 5 | 1 | 1.2e-09 | 9.6e-10 | 1.0e+00 | 100 | PCCB |
4 | 5 | 106500969 | 108412472 | 1 | 1 | 1.8e-08 | 6.7e-08 | 7.8e-02 | 89 | FBXL17 |
5 | 5 | 138933151 | 140378983 | 1 | 1 | 2.3e-07 | 7.7e-08 | 1.2e-01 | 92 | PFDN1 |
6 | 8 | 8092025 | 11891593 | 18 | 1 | 5.4e-13 | 3.8e-13 | 1.9e-02 | 90 | XKR6 |
7 | 9 | 127218258 | 128824378 | 3 | 1 | 8.3e-10 | 3.7e-09 | 1.0e-01 | 92 | PRPS1P2 |
8 | 11 | 12611333 | 14105497 | 1 | 1 | 5.7e-18 | 1.8e-21 | 4.8e-05 | 82 | ARNTL |
9 | 11 | 56716782 | 58178587 | 4 | 1 | 1.8e-10 | 7.8e-11 | 2.7e-02 | 88 | ZDHHC5 |
10 | 11 | 112486568 | 113952419 | 3 | 2 | 1.5e-10 | 4.0e-11 | 3.7e-01 | 98 | DRD2 TTC12 |
11 | 13 | 110849169 | 112251122 | 1 | 1 | 2.0e-07 | 7.1e-07 | 2.4e-01 | 94 | ANKRD10-IT1 |
12 | 16 | 89375239 | 90172696 | 4 | 1 | 1.2e-09 | 4.1e-07 | 9.5e-01 | 100 | DBNDD1 |
13 | 17 | 1584324 | 3000009 | 3 | 1 | 2.1e-08 | 2.2e-07 | 9.5e-01 | 100 | MNT |
14 | 19 | 13505333 | 14978284 | 2 | 1 | 1.3e-07 | 1.3e-07 | 1.0e+00 | 100 | PRKACA |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Vagina | 2 | 0.315 | 2.0 |
GTEx | Brain Cortex | 1 | 0.097 | 1.9 |
GTEx | Esophagus Gastroesophageal Junction | 2 | 0.138 | 1.9 |
GTEx | Ovary | 0 | 0.000 | 1.9 |
GTEx | Small Intestine Terminal Ileum | 2 | 0.434 | 1.9 |
GTEx | Uterus | 2 | 0.353 | 1.9 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.438 | 1.9 |
GTEx | Adrenal Gland | 2 | 0.137 | 1.8 |
GTEx | Artery Aorta | 4 | 0.134 | 1.8 |
GTEx | Artery Coronary | 2 | 0.169 | 1.8 |
GTEx | Brain Caudate basal ganglia | 1 | 0.109 | 1.8 |
GTEx | Brain Cerebellar Hemisphere | 2 | 0.134 | 1.8 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 1.8 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.8 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.8 |
GTEx | Brain Putamen basal ganglia | 1 | 0.160 | 1.8 |
GTEx | Breast Mammary Tissue | 4 | 0.203 | 1.8 |
GTEx | Cells EBV-transformed lymphocytes | 2 | 0.141 | 1.8 |
GTEx | Colon Sigmoid | 4 | 0.274 | 1.8 |
GTEx | Colon Transverse | 5 | 0.242 | 1.8 |
GTEx | Esophagus Muscularis | 4 | 0.124 | 1.8 |
GTEx | Heart Atrial Appendage | 3 | 0.190 | 1.8 |
GTEx | Heart Left Ventricle | 4 | 0.261 | 1.8 |
GTEx | Pancreas | 5 | 0.306 | 1.8 |
GTEx | Prostate | 1 | 0.120 | 1.8 |
GTEx | Skin Not Sun Exposed Suprapubic | 5 | 0.203 | 1.8 |
GTEx | Spleen | 3 | 0.213 | 1.8 |
GTEx | Stomach | 3 | 0.206 | 1.8 |
ROSMAP | Brain Pre-frontal Cortex | 11 | 0.251 | 1.8 |
GTEx | Adipose Subcutaneous | 2 | 0.057 | 1.7 |
GTEx | Adipose Visceral Omentum | 3 | 0.147 | 1.7 |
GTEx | Artery Tibial | 4 | 0.106 | 1.7 |
GTEx | Brain Cerebellum | 3 | 0.151 | 1.7 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue (Male) | 2 | 0.168 | 1.7 |
GTEx | Breast Mammary Tissue (Female) | 2 | 0.122 | 1.7 |
GTEx | Cells Transformed fibroblasts | 3 | 0.071 | 1.7 |
GTEx | Esophagus Mucosa | 7 | 0.211 | 1.7 |
GTEx | Lung | 6 | 0.209 | 1.7 |
GTEx | Muscle Skeletal | 4 | 0.138 | 1.7 |
GTEx | Nerve Tibial | 4 | 0.093 | 1.7 |
GTEx | Pituitary | 1 | 0.090 | 1.7 |
GTEx | Skin Sun Exposed Lower leg | 6 | 0.165 | 1.7 |
GTEx | Testis | 4 | 0.127 | 1.7 |
GTEx | Thyroid | 3 | 0.075 | 1.7 |
GTEx | Whole Blood | 1 | 0.050 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.181 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 5 | 0.200 | 1.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 1 | 0.060 | 1.7 |
GTEx | Liver | 0 | 0.000 | 1.6 |
METSIM | Adipose | 1 | 0.022 | 1.6 |
NTR | Blood | 2 | 0.083 | 1.6 |
CommonMind | Brain Pre-frontal Cortex | 3 | 0.056 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 2 | 0.121 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 3 | 0.068 | 1.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 4 | 0.194 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 5 | 0.184 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 5 | 0.122 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.195 | 1.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 4 | 0.093 | 1.6 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 6 | 0.204 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 2 | 0.151 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 6 | 0.130 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.187 | 1.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 4 | 0.238 | 1.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 2 | 0.156 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 4 | 0.078 | 1.6 |
YFS | Blood | 2 | 0.043 | 1.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.5 |