59 significantly associated models · 38 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 26428864 | 27820430 | 1 | 1 | 3.0e-07 | 1.4e-06 | 6.9e-03 | 69 | PIGV |
2 | 1 | 112312154 | 113907148 | 4 | 2 | 8.0e-11 | 9.4e-10 | 4.6e-05 | 56 | CTTNBP2NL RHOC |
3 | 3 | 26720690 | 28211713 | 1 | 1 | 1.7e-07 | 2.1e-08 | 4.1e-02 | 87 | SLC4A7 |
4 | 5 | 130830617 | 132304222 | 2 | 1 | 3.1e-08 | 1.6e-07 | 1.0e+00 | 100 | PDLIM4 |
5 | 7 | 26969253 | 27533292 | 2 | 1 | 1.2e-10 | 6.1e-14 | 1.1e-04 | 74 | HOXA10 |
6 | 8 | 8092025 | 9669775 | 2 | 1 | 6.7e-09 | 1.2e-08 | 8.6e-03 | 79 | ERI1 |
7 | 8 | 10056664 | 11891593 | 6 | 1 | 9.5e-09 | 1.6e-08 | 5.7e-04 | 63 | NEIL2 |
8 | 11 | 1213806 | 2640824 | 3 | 3 | 3.5e-15 | 3.6e-16 | 5.7e-02 | 94 | LSP1 TNNI2 TNNT3 |
9 | 11 | 46570859 | 47977454 | 2 | 1 | 6.1e-09 | 1.4e-06 | 5.6e-01 | 98 | ACP2 |
10 | 11 | 99859184 | 101559718 | 2 | 1 | 1.6e-07 | 8.5e-08 | 1.0e+00 | 100 | ARHGAP42 |
11 | 15 | 74042497 | 75930199 | 4 | 1 | 2.7e-08 | 7.7e-08 | 1.0e+00 | 100 | ULK3 |
12 | 15 | 90730363 | 92135418 | 1 | 1 | 8.3e-08 | 1.8e-07 | 3.3e-01 | 96 | FES |
13 | 16 | 3969463 | 5433992 | 1 | 1 | 9.8e-08 | 1.6e-05 | 8.8e-02 | 84 | MGRN1 |
14 | 16 | 29711343 | 31102321 | 5 | 2 | 1.0e-09 | 5.2e-07 | 4.5e-01 | 98 | ALDOA ZNF48 |
15 | 20 | 7847156 | 9112333 | 1 | 1 | 2.2e-07 | 2.9e-10 | 3.2e-04 | 68 | PLCB1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.7 |
GTEx | Adipose Visceral Omentum | 1 | 0.049 | 1.6 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.6 |
GTEx | Artery Aorta | 2 | 0.067 | 1.6 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.6 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.070 | 1.6 |
GTEx | Cells Transformed fibroblasts | 4 | 0.095 | 1.6 |
GTEx | Colon Transverse | 0 | 0.000 | 1.6 |
GTEx | Esophagus Mucosa | 0 | 0.000 | 1.6 |
GTEx | Esophagus Muscularis | 2 | 0.062 | 1.6 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.6 |
GTEx | Prostate | 0 | 0.000 | 1.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 1 | 0.041 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 1 | 0.027 | 1.6 |
GTEx | Whole Blood | 0 | 0.000 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 2 | 0.046 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 1 | 0.037 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.6 |
GTEx | Adipose Subcutaneous | 0 | 0.000 | 1.5 |
GTEx | Artery Tibial | 3 | 0.080 | 1.5 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.5 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.5 |
GTEx | Brain Cortex | 0 | 0.000 | 1.5 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 1.5 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.5 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.5 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.5 |
GTEx | Heart Left Ventricle | 1 | 0.065 | 1.5 |
GTEx | Liver | 0 | 0.000 | 1.5 |
GTEx | Lung | 1 | 0.035 | 1.5 |
GTEx | Muscle Skeletal | 3 | 0.104 | 1.5 |
GTEx | Nerve Tibial | 2 | 0.046 | 1.5 |
GTEx | Ovary | 0 | 0.000 | 1.5 |
GTEx | Pancreas | 1 | 0.061 | 1.5 |
GTEx | Pituitary | 0 | 0.000 | 1.5 |
GTEx | Spleen | 0 | 0.000 | 1.5 |
GTEx | Stomach | 0 | 0.000 | 1.5 |
GTEx | Testis | 1 | 0.032 | 1.5 |
GTEx | Thyroid | 4 | 0.100 | 1.5 |
GTEx | Uterus | 0 | 0.000 | 1.5 |
GTEx | Vagina | 1 | 0.157 | 1.5 |
METSIM | Adipose | 3 | 0.065 | 1.5 |
NTR | Blood | 1 | 0.042 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 2 | 0.037 | 1.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 4 | 0.091 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.5 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 2 | 0.049 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 2 | 0.046 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 1 | 0.034 | 1.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 2 | 0.080 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 2 | 0.039 | 1.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.5 |
GTEx | Artery Coronary | 0 | 0.000 | 1.4 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.4 |
YFS | Blood | 2 | 0.043 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.4 |