23 significantly associated models · 19 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 109605305 | 110183021 | 1 | 1 | 1.9e-07 | 3.8e-07 | 6.1e-01 | 99 | SORT1 |
2 | 1 | 112761639 | 113496790 | 2 | 1 | 7.2e-10 | 1.4e-09 | 5.1e-04 | 67 | RHOC |
3 | 2 | 27467598 | 27949052 | 1 | 1 | 1.2e-07 | 2.2e-07 | 1.0e+00 | 100 | FNDC4 |
4 | 2 | 48517552 | 49073574 | 1 | 1 | 2.1e-07 | 1.1e-06 | 8.8e-01 | 100 | STON1 |
5 | 3 | 10617048 | 12293966 | 1 | 1 | 2.1e-07 | 5.3e-08 | 5.8e-02 | 88 | ATG7 |
6 | 4 | 103091730 | 104503936 | 1 | 1 | 2.0e-07 | 1.5e-06 | 7.8e-01 | 100 | CISD2 |
7 | 6 | 160071844 | 161571560 | 1 | 1 | 6.7e-08 | 8.8e-08 | 3.9e-02 | 85 | SLC22A3 |
8 | 7 | 26969253 | 27468350 | 1 | 1 | 5.1e-09 | 3.7e-08 | 1.4e-01 | 93 | HOXA10 |
9 | 7 | 129917130 | 131315092 | 1 | 1 | 2.4e-07 | 5.2e-08 | 5.8e-03 | 74 | RP11-138A9.1 |
10 | 11 | 1242690 | 2640824 | 1 | 1 | 2.7e-08 | 6.6e-09 | 2.7e-02 | 86 | TNNT3 |
11 | 11 | 99859184 | 101559718 | 2 | 1 | 7.1e-08 | 1.9e-07 | 6.3e-01 | 99 | TMEM133 |
12 | 12 | 111154626 | 112582540 | 1 | 1 | 1.5e-07 | 2.0e-11 | 1.4e-05 | 58 | SH2B3 |
13 | 16 | 3969463 | 5441125 | 2 | 2 | 4.8e-09 | 6.3e-08 | 3.2e-01 | 97 | MGRN1 NUDT16L1 |
14 | 16 | 89281093 | 90172696 | 1 | 1 | 2.9e-07 | 8.0e-06 | 1.3e-02 | 69 | MC1R |
15 | 19 | 48918157 | 49452462 | 2 | 1 | 1.5e-09 | 4.3e-07 | 4.9e-01 | 98 | NTN5 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.7 |
GTEx | Adipose Visceral Omentum | 1 | 0.049 | 1.6 |
GTEx | Artery Aorta | 0 | 0.000 | 1.6 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.6 |
GTEx | Cells Transformed fibroblasts | 0 | 0.000 | 1.6 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.6 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.6 |
GTEx | Lung | 0 | 0.000 | 1.6 |
GTEx | Ovary | 0 | 0.000 | 1.6 |
GTEx | Pancreas | 0 | 0.000 | 1.6 |
GTEx | Prostate | 0 | 0.000 | 1.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 1 | 0.041 | 1.6 |
GTEx | Spleen | 0 | 0.000 | 1.6 |
GTEx | Stomach | 0 | 0.000 | 1.6 |
GTEx | Thyroid | 0 | 0.000 | 1.6 |
GTEx | Uterus | 0 | 0.000 | 1.6 |
GTEx | Whole Blood | 1 | 0.050 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 2 | 0.098 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 1 | 0.063 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.6 |
GTEx | Adipose Subcutaneous | 0 | 0.000 | 1.5 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.5 |
GTEx | Artery Coronary | 0 | 0.000 | 1.5 |
GTEx | Artery Tibial | 2 | 0.053 | 1.5 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.5 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.5 |
GTEx | Brain Cortex | 0 | 0.000 | 1.5 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.5 |
GTEx | Colon Transverse | 0 | 0.000 | 1.5 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.5 |
GTEx | Esophagus Mucosa | 0 | 0.000 | 1.5 |
GTEx | Esophagus Muscularis | 1 | 0.031 | 1.5 |
GTEx | Heart Left Ventricle | 1 | 0.065 | 1.5 |
GTEx | Liver | 0 | 0.000 | 1.5 |
GTEx | Muscle Skeletal | 2 | 0.069 | 1.5 |
GTEx | Nerve Tibial | 0 | 0.000 | 1.5 |
GTEx | Pituitary | 0 | 0.000 | 1.5 |
GTEx | Skin Sun Exposed Lower leg | 0 | 0.000 | 1.5 |
GTEx | Testis | 0 | 0.000 | 1.5 |
GTEx | Vagina | 0 | 0.000 | 1.5 |
METSIM | Adipose | 2 | 0.043 | 1.5 |
NTR | Blood | 0 | 0.000 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 2 | 0.037 | 1.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 1 | 0.023 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 1 | 0.090 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 3 | 0.058 | 1.5 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.4 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.4 |
YFS | Blood | 2 | 0.043 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.4 |