547 significantly associated models · 76 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 205517299 | 205921859 | 1 | 1 | 1.9e-08 | 1.5e-06 | 7.8e-01 | 100 | SLC41A1 |
2 | 3 | 48381826 | 51043528 | 14 | 2 | 1.4e-12 | 1.5e-10 | 1.2e-01 | 94 | GPX1 RBM6 |
3 | 5 | 147516165 | 148067337 | 1 | 1 | 1.1e-07 | 5.4e-09 | 1.5e-02 | 83 | FBXO38 |
4 | 7 | 11553163 | 12967449 | 1 | 1 | 1.5e-09 | 3.3e-09 | 1.2e-01 | 93 | TMEM106B |
5 | 8 | 8092025 | 11860845 | 9 | 1 | 6.8e-10 | 8.5e-10 | 1.4e-01 | 94 | AF131215.2 |
6 | 8 | 140969818 | 142706843 | 1 | 1 | 4.4e-10 | 7.8e-09 | 7.1e-01 | 100 | PTK2 |
7 | 9 | 119768572 | 121177842 | 1 | 1 | 8.1e-09 | 1.2e-08 | 1.0e+00 | 100 | TLR4 |
8 | 11 | 46578400 | 48559571 | 8 | 1 | 2.8e-12 | 1.1e-11 | 2.0e-01 | 96 | MADD |
9 | 11 | 112542418 | 113969669 | 4 | 3 | 1.8e-09 | 4.0e-13 | 7.3e-04 | 78 | ANKK1 DRD2 RP11-159N11.4 |
10 | 12 | 121453962 | 122915054 | 1 | 1 | 1.3e-07 | 5.4e-09 | 1.2e-02 | 81 | TMEM120B |
11 | 14 | 74531485 | 76089054 | 3 | 1 | 1.5e-08 | 1.6e-09 | 3.5e-02 | 88 | DLST |
12 | 16 | 86667409 | 89428967 | 3 | 2 | 1.0e-08 | 1.4e-08 | 1.0e+00 | 100 | FBXO31 MVD |
13 | 17 | 42607368 | 45796313 | 20 | 1 | 2.6e-17 | 4.2e-15 | 5.7e-01 | 100 | WNT3 |
14 | 18 | 49172179 | 51753106 | 1 | 1 | 1.5e-07 | 8.7e-12 | 3.1e-06 | 53 | DCC |
15 | 18 | 52209411 | 54028036 | 1 | 1 | 1.0e-13 | 1.4e-13 | 8.0e-02 | 94 | TCF4 |
16 | 22 | 40472399 | 42614362 | 7 | 1 | 3.0e-11 | 2.5e-12 | 2.0e-02 | 89 | SLC25A17 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 8 | 1.411 | 2.4 |
GTEx | Ovary | 7 | 0.771 | 2.2 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.868 | 2.2 |
GTEx | Artery Coronary | 10 | 0.845 | 2.1 |
GTEx | Brain Cortex | 10 | 0.966 | 2.1 |
GTEx | Brain Hippocampus | 4 | 0.763 | 2.1 |
GTEx | Brain Hypothalamus | 5 | 0.847 | 2.1 |
GTEx | Brain Putamen basal ganglia | 4 | 0.641 | 2.1 |
GTEx | Cells EBV-transformed lymphocytes | 12 | 0.843 | 2.1 |
GTEx | Adipose Visceral Omentum | 11 | 0.540 | 2.0 |
GTEx | Artery Aorta | 12 | 0.403 | 2.0 |
GTEx | Brain Caudate basal ganglia | 7 | 0.761 | 2.0 |
GTEx | Brain Frontal Cortex BA9 | 6 | 0.649 | 2.0 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.809 | 2.0 |
GTEx | Breast Mammary Tissue (Male) | 7 | 0.587 | 2.0 |
GTEx | Breast Mammary Tissue (Female) | 9 | 0.547 | 2.0 |
GTEx | Colon Sigmoid | 10 | 0.684 | 2.0 |
GTEx | Esophagus Gastroesophageal Junction | 10 | 0.692 | 2.0 |
GTEx | Esophagus Muscularis | 17 | 0.526 | 2.0 |
GTEx | Heart Left Ventricle | 9 | 0.588 | 2.0 |
GTEx | Liver | 4 | 0.558 | 2.0 |
GTEx | Pituitary | 6 | 0.538 | 2.0 |
GTEx | Prostate | 7 | 0.838 | 2.0 |
GTEx | Skin Not Sun Exposed Suprapubic | 12 | 0.488 | 2.0 |
GTEx | Spleen | 9 | 0.638 | 2.0 |
GTEx | Stomach | 9 | 0.619 | 2.0 |
GTEx | Vagina | 6 | 0.945 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.438 | 2.0 |
GTEx | Adrenal Gland | 8 | 0.549 | 1.9 |
GTEx | Brain Cerebellar Hemisphere | 10 | 0.672 | 1.9 |
GTEx | Brain Cerebellum | 12 | 0.605 | 1.9 |
GTEx | Breast Mammary Tissue | 9 | 0.456 | 1.9 |
GTEx | Colon Transverse | 10 | 0.484 | 1.9 |
GTEx | Esophagus Mucosa | 16 | 0.482 | 1.9 |
GTEx | Heart Atrial Appendage | 8 | 0.507 | 1.9 |
GTEx | Lung | 13 | 0.452 | 1.9 |
GTEx | Pancreas | 9 | 0.551 | 1.9 |
GTEx | Skin Sun Exposed Lower leg | 15 | 0.412 | 1.9 |
GTEx | Testis | 11 | 0.349 | 1.9 |
GTEx | Adipose Subcutaneous | 12 | 0.344 | 1.8 |
GTEx | Artery Tibial | 8 | 0.213 | 1.8 |
GTEx | Cells Transformed fibroblasts | 11 | 0.262 | 1.8 |
GTEx | Muscle Skeletal | 10 | 0.346 | 1.8 |
GTEx | Nerve Tibial | 12 | 0.278 | 1.8 |
GTEx | Thyroid | 16 | 0.400 | 1.8 |
GTEx | Whole Blood | 6 | 0.301 | 1.8 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.273 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 4 | 0.194 | 1.8 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.391 | 1.8 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 7 | 0.257 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 3 | 0.146 | 1.8 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 5 | 0.314 | 1.8 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.181 | 1.8 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.226 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 5 | 0.297 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.394 | 1.8 |
METSIM | Adipose | 4 | 0.087 | 1.7 |
NTR | Blood | 8 | 0.333 | 1.7 |
ROSMAP | Brain Pre-frontal Cortex | 5 | 0.114 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 6 | 0.112 | 1.7 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 2 | 0.121 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.181 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 8 | 0.272 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 6 | 0.239 | 1.7 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.289 | 1.7 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.281 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 4 | 0.313 | 1.7 |
YFS | Blood | 7 | 0.152 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 5 | 0.113 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 6 | 0.146 | 1.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 4 | 0.093 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 8 | 0.173 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 6 | 0.116 | 1.6 |