735 significantly associated models · 98 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 23453834 | 24924438 | 1 | 1 | 2.5e-09 | 6.9e-10 | 1.0e+00 | 100 | UBXN2A |
2 | 3 | 48335857 | 51043528 | 25 | 7 | 3.3e-15 | 1.0e-10 | NaN | NaN | GPX1 MST1R RBM6 RNF123 UBA7 |
3 | 3 | 135806811 | 136715468 | 1 | 1 | 2.3e-08 | 1.9e-08 | 2.5e-01 | 96 | STAG1 |
4 | 7 | 1580921 | 2977732 | 1 | 1 | 6.4e-09 | 4.8e-11 | 3.9e-05 | 61 | FTSJ2 |
5 | 7 | 7429560 | 8007509 | 1 | 1 | 2.7e-07 | 1.5e-06 | 2.8e-02 | 79 | RPA3 |
6 | 7 | 11553163 | 12967449 | 1 | 1 | 4.5e-08 | 2.1e-08 | 1.0e+00 | 100 | TMEM106B |
7 | 8 | 8092025 | 12966739 | 21 | 1 | 6.8e-12 | 1.6e-11 | 3.6e-03 | 81 | ERI1 |
8 | 9 | 95502571 | 96898436 | 1 | 1 | 5.0e-08 | 9.1e-08 | 1.0e+00 | 100 | RP11-165J3.6 |
9 | 11 | 46010847 | 48559571 | 14 | 7 | 1.5e-14 | 9.2e-13 | NaN | NaN | ARFGAP2 ARHGAP1 DDB2 FNBP4 MADD NR1H3 |
10 | 11 | 112135760 | 113952419 | 4 | 2 | 1.6e-12 | 1.8e-12 | 1.0e+00 | 100 | DRD2 NCAM1 |
11 | 12 | 109744235 | 110284465 | 2 | 1 | 9.7e-08 | 2.3e-07 | 9.0e-03 | 75 | MVK |
12 | 13 | 31078511 | 32595740 | 1 | 1 | 8.7e-08 | 5.1e-06 | 4.3e-01 | 97 | B3GALTL |
13 | 17 | 1805677 | 3287175 | 1 | 1 | 8.7e-09 | 5.8e-12 | 1.3e-04 | 69 | PAFAH1B1 |
14 | 17 | 15214608 | 16908991 | 3 | 1 | 7.1e-09 | 4.3e-08 | 8.6e-01 | 100 | PIGL |
15 | 17 | 42774693 | 45796313 | 19 | 1 | 4.3e-11 | 3.3e-09 | 7.7e-01 | 100 | MAPT |
16 | 18 | 52209411 | 54028036 | 1 | 1 | 1.4e-07 | 1.5e-07 | 1.5e-01 | 92 | TCF4 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 9 | 1.59 | 2.2 |
GTEx | Small Intestine Terminal Ileum | 7 | 1.52 | 2.1 |
GTEx | Artery Coronary | 13 | 1.10 | 2.0 |
GTEx | Brain Caudate basal ganglia | 8 | 0.87 | 2.0 |
GTEx | Brain Cortex | 13 | 1.26 | 2.0 |
GTEx | Brain Hypothalamus | 4 | 0.68 | 2.0 |
GTEx | Colon Sigmoid | 15 | 1.03 | 2.0 |
GTEx | Esophagus Gastroesophageal Junction | 13 | 0.90 | 2.0 |
GTEx | Ovary | 8 | 0.88 | 2.0 |
GTEx | Prostate | 8 | 0.96 | 2.0 |
GTEx | Adipose Visceral Omentum | 14 | 0.69 | 1.9 |
GTEx | Brain Frontal Cortex BA9 | 9 | 0.97 | 1.9 |
GTEx | Brain Putamen basal ganglia | 5 | 0.80 | 1.9 |
GTEx | Heart Atrial Appendage | 13 | 0.82 | 1.9 |
GTEx | Heart Left Ventricle | 13 | 0.85 | 1.9 |
GTEx | Lung | 22 | 0.77 | 1.9 |
GTEx | Pancreas | 11 | 0.67 | 1.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 18 | 0.73 | 1.9 |
GTEx | Spleen | 13 | 0.92 | 1.9 |
GTEx | Stomach | 11 | 0.76 | 1.9 |
GTEx | Vagina | 7 | 1.10 | 1.9 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.44 | 1.9 |
GTEx | Adrenal Gland | 8 | 0.55 | 1.8 |
GTEx | Artery Aorta | 18 | 0.60 | 1.8 |
GTEx | Artery Tibial | 15 | 0.40 | 1.8 |
GTEx | Brain Cerebellar Hemisphere | 11 | 0.74 | 1.8 |
GTEx | Brain Cerebellum | 12 | 0.61 | 1.8 |
GTEx | Brain Hippocampus | 5 | 0.95 | 1.8 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.81 | 1.8 |
GTEx | Breast Mammary Tissue | 13 | 0.66 | 1.8 |
GTEx | Breast Mammary Tissue (Female) | 12 | 0.73 | 1.8 |
GTEx | Cells EBV-transformed lymphocytes | 12 | 0.84 | 1.8 |
GTEx | Colon Transverse | 14 | 0.68 | 1.8 |
GTEx | Esophagus Mucosa | 16 | 0.48 | 1.8 |
GTEx | Esophagus Muscularis | 20 | 0.62 | 1.8 |
GTEx | Liver | 5 | 0.70 | 1.8 |
GTEx | Pituitary | 7 | 0.63 | 1.8 |
GTEx | Skin Sun Exposed Lower leg | 20 | 0.55 | 1.8 |
GTEx | Testis | 17 | 0.54 | 1.8 |
GTEx | Thyroid | 19 | 0.48 | 1.8 |
ROSMAP | Brain Pre-frontal Cortex | 20 | 0.46 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 4 | 0.19 | 1.8 |
GTEx | Adipose Subcutaneous | 16 | 0.46 | 1.7 |
GTEx | Cells Transformed fibroblasts | 18 | 0.43 | 1.7 |
GTEx | Muscle Skeletal | 9 | 0.31 | 1.7 |
GTEx | Nerve Tibial | 18 | 0.42 | 1.7 |
GTEx | Whole Blood | 9 | 0.45 | 1.7 |
NTR | Blood | 9 | 0.37 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 10 | 0.19 | 1.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.46 | 1.7 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 12 | 0.44 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 7 | 0.34 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 10 | 0.34 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 6 | 0.24 | 1.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 4 | 0.25 | 1.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 5 | 0.30 | 1.7 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 6 | 0.45 | 1.7 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 6 | 0.36 | 1.7 |
GTEx | Breast Mammary Tissue (Male) | 6 | 0.50 | 1.6 |
METSIM | Adipose | 7 | 0.15 | 1.6 |
YFS | Blood | 5 | 0.11 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 6 | 0.36 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 9 | 0.20 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 3 | 0.29 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 13 | 0.32 | 1.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 12 | 0.28 | 1.6 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 4 | 0.36 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 10 | 0.22 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.29 | 1.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.19 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 8 | 0.16 | 1.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 3 | 0.23 | 1.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 1.4 |