77 significantly associated models · 28 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 43073464 | 44618031 | 4 | 1 | 6.7e-09 | 8.9e-08 | 1.4e-01 | 92 | HYI |
2 | 1 | 150415631 | 151793174 | 2 | 1 | 5.6e-08 | 1.1e-06 | 7.4e-01 | 100 | BNIPL |
3 | 1 | 173103273 | 175663031 | 9 | 1 | 1.6e-10 | 1.2e-10 | 3.3e-02 | 89 | ZBTB37 |
4 | 1 | 235988566 | 237463399 | 4 | 1 | 1.2e-09 | 3.5e-10 | 8.9e-02 | 93 | RP11-385F5.4 |
5 | 3 | 70757099 | 71880670 | 1 | 1 | 3.0e-07 | 2.4e-09 | 2.5e-05 | 50 | FOXP1 |
6 | 4 | 41746460 | 42336312 | 1 | 1 | 2.4e-07 | 1.2e-08 | 1.2e-02 | 81 | SLC30A9 |
7 | 7 | 116660803 | 118207833 | 1 | 2 | 4.5e-08 | 1.3e-07 | 7.6e-01 | 100 | CTTNBP2 |
8 | 11 | 56666189 | 58284951 | 3 | 2 | 2.3e-08 | 1.1e-07 | 1.0e+00 | 100 | CTNND1 ZDHHC5 |
9 | 17 | 1588930 | 3000009 | 2 | 1 | 1.1e-09 | 8.1e-09 | 7.6e-02 | 91 | RP1-59D14.1 |
10 | 18 | 34614002 | 35378540 | 1 | 1 | 9.0e-08 | 6.8e-07 | 1.1e-01 | 90 | CELF4 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Vagina | 0 | 0.000 | 1.9 |
GTEx | Adipose Visceral Omentum | 2 | 0.098 | 1.7 |
GTEx | Adrenal Gland | 1 | 0.069 | 1.7 |
GTEx | Artery Tibial | 1 | 0.027 | 1.7 |
GTEx | Brain Caudate basal ganglia | 2 | 0.217 | 1.7 |
GTEx | Brain Cerebellar Hemisphere | 1 | 0.067 | 1.7 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue | 2 | 0.101 | 1.7 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.7 |
GTEx | Esophagus Mucosa | 1 | 0.030 | 1.7 |
GTEx | Esophagus Muscularis | 1 | 0.031 | 1.7 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.7 |
GTEx | Heart Left Ventricle | 2 | 0.131 | 1.7 |
GTEx | Lung | 5 | 0.174 | 1.7 |
GTEx | Muscle Skeletal | 0 | 0.000 | 1.7 |
GTEx | Pancreas | 1 | 0.061 | 1.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 3 | 0.122 | 1.7 |
GTEx | Stomach | 2 | 0.138 | 1.7 |
GTEx | Thyroid | 2 | 0.050 | 1.7 |
ROSMAP | Brain Pre-frontal Cortex | 2 | 0.046 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 4 | 0.074 | 1.7 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 3 | 0.181 | 1.7 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 4 | 0.093 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 1 | 0.034 | 1.7 |
GTEx | Adipose Subcutaneous | 2 | 0.057 | 1.6 |
GTEx | Artery Aorta | 0 | 0.000 | 1.6 |
GTEx | Artery Coronary | 0 | 0.000 | 1.6 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.6 |
GTEx | Brain Cortex | 0 | 0.000 | 1.6 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.6 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 1 | 0.116 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Female) | 1 | 0.061 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 2 | 0.141 | 1.6 |
GTEx | Cells Transformed fibroblasts | 4 | 0.095 | 1.6 |
GTEx | Colon Transverse | 2 | 0.097 | 1.6 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.6 |
GTEx | Nerve Tibial | 1 | 0.023 | 1.6 |
GTEx | Ovary | 0 | 0.000 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 4 | 0.110 | 1.6 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.6 |
GTEx | Spleen | 0 | 0.000 | 1.6 |
GTEx | Testis | 2 | 0.063 | 1.6 |
GTEx | Whole Blood | 0 | 0.000 | 1.6 |
NTR | Blood | 2 | 0.083 | 1.6 |
YFS | Blood | 2 | 0.043 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 2 | 0.045 | 1.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 1 | 0.037 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 1 | 0.049 | 1.6 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.6 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 1 | 0.022 | 1.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 1 | 0.094 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 2 | 0.039 | 1.6 |
GTEx | Liver | 0 | 0.000 | 1.5 |
GTEx | Pituitary | 0 | 0.000 | 1.5 |
GTEx | Prostate | 0 | 0.000 | 1.5 |
GTEx | Uterus | 0 | 0.000 | 1.5 |
METSIM | Adipose | 2 | 0.043 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.5 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.4 |