640 significantly associated models · 86 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 23453834 | 25141538 | 4 | 2 | 3.2e-10 | 2.2e-10 | 3.0e-02 | 88 | C2orf84 UBXN2A |
2 | 3 | 48381826 | 51009435 | 21 | 1 | 5.1e-14 | 6.6e-13 | 1.9e-01 | 97 | GPX1 |
3 | 3 | 135273949 | 137261517 | 4 | 1 | 7.5e-11 | 4.7e-10 | 6.2e-01 | 99 | STAG1 |
4 | 3 | 149722394 | 151134540 | 1 | 1 | 4.1e-12 | 1.1e-05 | 3.7e-01 | 96 | RP11-103G8.2 |
5 | 7 | 116660803 | 118207833 | 1 | 1 | 7.6e-08 | 5.5e-10 | 4.0e-04 | 68 | CTTNBP2 |
6 | 8 | 8092025 | 11891593 | 12 | 1 | 6.0e-13 | 4.3e-11 | 2.3e-01 | 97 | FAM86B3P |
7 | 9 | 119768572 | 121177842 | 1 | 1 | 2.3e-07 | 3.3e-07 | 1.0e+00 | 100 | TLR4 |
8 | 11 | 46010847 | 48285906 | 8 | 1 | 1.4e-11 | 5.7e-10 | 2.5e-02 | 87 | ZNF408 |
9 | 11 | 63316786 | 64820283 | 2 | 1 | 1.5e-08 | 7.9e-08 | 2.5e-03 | 68 | PPP1R14B |
10 | 12 | 111154626 | 112582540 | 1 | 1 | 1.5e-07 | 9.7e-07 | 2.4e-01 | 94 | SH2B3 |
11 | 14 | 74424938 | 76226003 | 5 | 2 | 2.5e-10 | 3.1e-11 | 8.3e-02 | 93 | AREL1 DLST |
12 | 17 | 42774693 | 45796313 | 19 | 1 | 5.2e-12 | 2.4e-11 | 1.0e+00 | 100 | KANSL1-AS1 |
13 | 18 | 34614002 | 35378540 | 1 | 1 | 4.5e-09 | 2.3e-12 | 4.3e-05 | 66 | CELF4 |
14 | 18 | 49172179 | 51753106 | 1 | 1 | 1.5e-07 | 6.1e-12 | 2.3e-06 | 53 | DCC |
15 | 19 | 32209988 | 33668090 | 2 | 1 | 3.9e-10 | 1.0e-09 | 1.0e+00 | 100 | DPY19L3 |
16 | 20 | 2429222 | 3827309 | 1 | 1 | 1.7e-07 | 5.2e-05 | 2.2e-01 | 91 | FASTKD5 |
17 | 20 | 44501458 | 44999958 | 1 | 1 | 1.1e-07 | 5.1e-07 | 1.0e-01 | 89 | CD40 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 8 | 1.411 | 2.3 |
GTEx | Prostate | 8 | 0.958 | 2.2 |
GTEx | Artery Coronary | 11 | 0.930 | 2.1 |
GTEx | Brain Frontal Cortex BA9 | 8 | 0.866 | 2.1 |
GTEx | Ovary | 7 | 0.771 | 2.1 |
GTEx | Skin Not Sun Exposed Suprapubic | 14 | 0.569 | 2.1 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.085 | 2.1 |
GTEx | Vagina | 7 | 1.102 | 2.1 |
GTEx | Adipose Visceral Omentum | 11 | 0.540 | 2.0 |
GTEx | Brain Caudate basal ganglia | 7 | 0.761 | 2.0 |
GTEx | Brain Cortex | 8 | 0.773 | 2.0 |
GTEx | Brain Hippocampus | 4 | 0.763 | 2.0 |
GTEx | Brain Hypothalamus | 6 | 1.017 | 2.0 |
GTEx | Brain Putamen basal ganglia | 6 | 0.962 | 2.0 |
GTEx | Breast Mammary Tissue | 9 | 0.456 | 2.0 |
GTEx | Cells EBV-transformed lymphocytes | 9 | 0.632 | 2.0 |
GTEx | Colon Sigmoid | 12 | 0.821 | 2.0 |
GTEx | Esophagus Gastroesophageal Junction | 9 | 0.623 | 2.0 |
GTEx | Esophagus Muscularis | 21 | 0.650 | 2.0 |
GTEx | Heart Left Ventricle | 9 | 0.588 | 2.0 |
GTEx | Skin Sun Exposed Lower leg | 16 | 0.440 | 2.0 |
GTEx | Spleen | 10 | 0.709 | 2.0 |
GTEx | Stomach | 11 | 0.757 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.876 | 2.0 |
GTEx | Adipose Subcutaneous | 12 | 0.344 | 1.9 |
GTEx | Adrenal Gland | 8 | 0.549 | 1.9 |
GTEx | Artery Aorta | 13 | 0.437 | 1.9 |
GTEx | Artery Tibial | 14 | 0.372 | 1.9 |
GTEx | Brain Cerebellar Hemisphere | 11 | 0.739 | 1.9 |
GTEx | Brain Cerebellum | 12 | 0.605 | 1.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.809 | 1.9 |
GTEx | Breast Mammary Tissue (Female) | 9 | 0.547 | 1.9 |
GTEx | Cells Transformed fibroblasts | 17 | 0.405 | 1.9 |
GTEx | Colon Transverse | 14 | 0.678 | 1.9 |
GTEx | Esophagus Mucosa | 18 | 0.542 | 1.9 |
GTEx | Heart Atrial Appendage | 11 | 0.697 | 1.9 |
GTEx | Lung | 17 | 0.592 | 1.9 |
GTEx | Muscle Skeletal | 10 | 0.346 | 1.9 |
GTEx | Nerve Tibial | 12 | 0.278 | 1.9 |
GTEx | Pancreas | 9 | 0.551 | 1.9 |
GTEx | Pituitary | 7 | 0.628 | 1.9 |
GTEx | Testis | 16 | 0.507 | 1.9 |
GTEx | Thyroid | 15 | 0.375 | 1.9 |
ROSMAP | Brain Pre-frontal Cortex | 15 | 0.342 | 1.9 |
GTEx | Breast Mammary Tissue (Male) | 7 | 0.587 | 1.8 |
GTEx | Liver | 4 | 0.558 | 1.8 |
GTEx | Whole Blood | 6 | 0.301 | 1.8 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 4 | 0.365 | 1.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.145 | 1.8 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 9 | 0.331 | 1.8 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 6 | 0.293 | 1.8 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 8 | 0.319 | 1.8 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 5 | 0.377 | 1.8 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.434 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.281 | 1.8 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 5 | 0.297 | 1.8 |
NTR | Blood | 7 | 0.291 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 12 | 0.223 | 1.7 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 3 | 0.181 | 1.7 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 6 | 0.136 | 1.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.391 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 9 | 0.209 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.271 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 13 | 0.442 | 1.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 6 | 0.377 | 1.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 6 | 0.361 | 1.7 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 10 | 0.216 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.7 |
The Cancer Genome Atlas | Thyroid Carcinoma | 10 | 0.194 | 1.7 |
METSIM | Adipose | 4 | 0.087 | 1.6 |
YFS | Blood | 4 | 0.087 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 7 | 0.171 | 1.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.394 | 1.6 |