220 significantly associated models · 44 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 109126153 | 110517617 | 2 | 1 | 7.5e-08 | 1.5e-07 | 4.4e-01 | 98 | SORT1 |
2 | 2 | 26624843 | 28038799 | 1 | 1 | 2.5e-07 | 3.7e-06 | 8.5e-05 | 28 | CGREF1 |
3 | 3 | 48702606 | 50932324 | 14 | 1 | 8.5e-12 | 2.6e-11 | 2.6e-01 | 97 | MST1R |
4 | 4 | 102868793 | 104627833 | 6 | 1 | 1.5e-10 | 9.8e-10 | 1.0e+00 | 100 | CISD2 |
5 | 5 | 113846922 | 115239004 | 1 | 1 | 2.8e-07 | 5.4e-06 | 2.8e-03 | 57 | CTC-428G20.3 |
6 | 7 | 73425238 | 74494207 | 2 | 1 | 2.7e-08 | 1.2e-06 | 1.2e-01 | 90 | PMS2P5 |
7 | 10 | 21123825 | 22724472 | 1 | 1 | 5.8e-08 | 1.6e-07 | 2.7e-01 | 96 | MLLT10 |
8 | 10 | 133048749 | 134466163 | 1 | 1 | 1.4e-07 | 8.5e-07 | 8.4e-02 | 88 | PPP2R2D |
9 | 11 | 100168289 | 101559718 | 1 | 1 | 1.7e-07 | 1.1e-06 | 2.4e-02 | 78 | TMEM133 |
10 | 12 | 111154626 | 113517494 | 3 | 1 | 1.1e-09 | 1.7e-14 | 1.2e-06 | 60 | SH2B3 |
11 | 14 | 74424938 | 76089054 | 4 | 1 | 3.7e-11 | 6.1e-11 | 3.3e-01 | 98 | RPS6KL1 |
12 | 15 | 80743350 | 81292020 | 1 | 1 | 1.1e-10 | 1.6e-09 | 5.0e-01 | 99 | FAM108C1 |
13 | 15 | 91181489 | 91686147 | 1 | 1 | 1.5e-07 | 5.0e-05 | 6.0e-01 | 98 | FES |
14 | 17 | 47119135 | 47685050 | 1 | 1 | 3.3e-08 | 3.0e-11 | 1.3e-06 | 47 | ZNF652 |
15 | 17 | 65431947 | 66828158 | 1 | 1 | 2.2e-07 | 5.1e-07 | 6.1e-01 | 99 | SH3GL1P3 |
16 | 20 | 57525478 | 58079512 | 1 | 1 | 2.2e-08 | 4.6e-09 | 5.6e-03 | 78 | ZNF831 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cerebellum | 5 | 0.252 | 2.1 |
GTEx | Artery Aorta | 6 | 0.202 | 2.0 |
GTEx | Skin Not Sun Exposed Suprapubic | 7 | 0.285 | 2.0 |
GTEx | Small Intestine Terminal Ileum | 2 | 0.434 | 2.0 |
GTEx | Adipose Subcutaneous | 3 | 0.086 | 1.9 |
GTEx | Adipose Visceral Omentum | 2 | 0.098 | 1.9 |
GTEx | Artery Tibial | 7 | 0.186 | 1.9 |
GTEx | Brain Cerebellar Hemisphere | 3 | 0.201 | 1.9 |
GTEx | Brain Cortex | 3 | 0.290 | 1.9 |
GTEx | Brain Frontal Cortex BA9 | 2 | 0.216 | 1.9 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.9 |
GTEx | Breast Mammary Tissue | 3 | 0.152 | 1.9 |
GTEx | Cells Transformed fibroblasts | 8 | 0.191 | 1.9 |
GTEx | Colon Sigmoid | 3 | 0.205 | 1.9 |
GTEx | Esophagus Gastroesophageal Junction | 3 | 0.208 | 1.9 |
GTEx | Esophagus Mucosa | 6 | 0.181 | 1.9 |
GTEx | Heart Atrial Appendage | 2 | 0.127 | 1.9 |
GTEx | Lung | 5 | 0.174 | 1.9 |
GTEx | Muscle Skeletal | 4 | 0.138 | 1.9 |
GTEx | Pancreas | 2 | 0.123 | 1.9 |
GTEx | Prostate | 1 | 0.120 | 1.9 |
GTEx | Skin Sun Exposed Lower leg | 8 | 0.220 | 1.9 |
GTEx | Testis | 3 | 0.095 | 1.9 |
GTEx | Whole Blood | 2 | 0.100 | 1.9 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.9 |
GTEx | Adrenal Gland | 3 | 0.206 | 1.8 |
GTEx | Artery Coronary | 2 | 0.169 | 1.8 |
GTEx | Brain Caudate basal ganglia | 2 | 0.217 | 1.8 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 1.8 |
GTEx | Breast Mammary Tissue (Female) | 2 | 0.122 | 1.8 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.070 | 1.8 |
GTEx | Colon Transverse | 3 | 0.145 | 1.8 |
GTEx | Esophagus Muscularis | 4 | 0.124 | 1.8 |
GTEx | Heart Left Ventricle | 1 | 0.065 | 1.8 |
GTEx | Liver | 1 | 0.139 | 1.8 |
GTEx | Nerve Tibial | 6 | 0.139 | 1.8 |
GTEx | Ovary | 1 | 0.110 | 1.8 |
GTEx | Pituitary | 1 | 0.090 | 1.8 |
GTEx | Spleen | 3 | 0.213 | 1.8 |
GTEx | Stomach | 2 | 0.138 | 1.8 |
GTEx | Thyroid | 5 | 0.125 | 1.8 |
GTEx | Vagina | 1 | 0.157 | 1.8 |
METSIM | Adipose | 4 | 0.087 | 1.8 |
NTR | Blood | 3 | 0.125 | 1.8 |
ROSMAP | Brain Pre-frontal Cortex | 10 | 0.228 | 1.8 |
CommonMind | Brain Pre-frontal Cortex | 8 | 0.149 | 1.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 6 | 0.136 | 1.8 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 4 | 0.147 | 1.8 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 7 | 0.238 | 1.8 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.181 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 1.8 |
The Cancer Genome Atlas | Thyroid Carcinoma | 4 | 0.078 | 1.8 |
GTEx | Brain Nucleus accumbens basal ganglia | 1 | 0.116 | 1.7 |
GTEx | Brain Putamen basal ganglia | 1 | 0.160 | 1.7 |
GTEx | Uterus | 1 | 0.176 | 1.7 |
YFS | Blood | 3 | 0.065 | 1.7 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 2 | 0.121 | 1.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 1 | 0.091 | 1.7 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 2 | 0.097 | 1.7 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 5 | 0.122 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 2 | 0.098 | 1.7 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 5 | 0.116 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.181 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 2 | 0.080 | 1.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 1 | 0.063 | 1.7 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 1 | 0.075 | 1.7 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 5 | 0.108 | 1.7 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 1 | 0.094 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.7 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.5 |