1018 significantly associated models · 257 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 41130424 | 42542658 | 1 | 1 | 2.9e-07 | 3.7e-06 | 7.2e-01 | 99 | FOXO6 |
2 | 1 | 43042125 | 45109101 | 7 | 1 | 2.9e-11 | 2.5e-11 | 9.5e-02 | 94 | MED8 |
3 | 1 | 65189751 | 66803080 | 2 | 1 | 2.7e-10 | 7.8e-10 | 1.0e-01 | 93 | LEPROT |
4 | 1 | 71163715 | 73435171 | 1 | 1 | 2.6e-14 | 3.1e-13 | 2.9e-02 | 91 | NEGR1 |
5 | 1 | 149880483 | 151715279 | 2 | 2 | 1.1e-07 | 1.5e-05 | 6.8e-01 | 99 | C1orf56 ENSA |
6 | 2 | 15703 | 963334 | 1 | 1 | 1.9e-09 | 7.8e-20 | 8.9e-16 | 22 | SH3YL1 |
7 | 2 | 24348096 | 25837917 | 2 | 1 | 9.6e-10 | 1.5e-08 | 1.7e-02 | 82 | ADCY3 |
8 | 2 | 47224927 | 48727280 | 1 | 1 | 9.5e-09 | 2.8e-09 | 1.2e-01 | 93 | MSH6 |
9 | 2 | 60470926 | 62394127 | 4 | 2 | 2.8e-13 | 3.5e-12 | 4.8e-02 | 92 | LOC339803 PUS10 |
10 | 2 | 152811852 | 154267276 | 1 | 1 | 2.2e-13 | 1.5e-12 | 1.0e+00 | 100 | PRPF40A |
11 | 2 | 199443880 | 201021954 | 1 | 1 | 1.5e-23 | 1.4e-23 | 1.0e+00 | 100 | SATB2 |
12 | 2 | 202540420 | 204433184 | 2 | 1 | 3.5e-08 | 4.6e-07 | 8.3e-01 | 100 | RP11-686O6.2 |
13 | 3 | 48335857 | 53623102 | 51 | 3 | 4.1e-13 | 6.8e-11 | 9.3e-02 | 93 | DAG1 HEMK1 TMEM110 |
14 | 3 | 127271320 | 128821807 | 1 | 1 | 1.8e-08 | 1.2e-08 | 2.3e-01 | 96 | EEFSEC |
15 | 3 | 155695485 | 157118526 | 1 | 1 | 1.1e-07 | 1.2e-07 | 1.0e+00 | 100 | TIPARP |
16 | 4 | 94527983 | 95955095 | 1 | 1 | 6.0e-11 | 1.5e-10 | 1.0e+00 | 100 | HPGDS |
17 | 5 | 133164490 | 134784086 | 3 | 2 | 4.7e-20 | 3.9e-22 | 3.9e-03 | 91 | SAR1B |
18 | 6 | 41005502 | 42598371 | 4 | 9 | 3.0e-10 | 1.6e-10 | 1.0e+00 | 100 | BYSL MED20 PRICKLE4 |
19 | 6 | 54344853 | 55832161 | 2 | 1 | 5.4e-09 | 8.8e-11 | 2.4e-03 | 78 | FAM83B |
20 | 6 | 56123698 | 57687035 | 3 | 1 | 9.4e-11 | 1.8e-10 | 4.2e-01 | 98 | BEND6 |
21 | 6 | 75612601 | 77124675 | 1 | 1 | 1.6e-07 | 4.7e-08 | 1.0e+00 | 100 | SENP6 |
22 | 6 | 83573836 | 85117025 | 1 | 1 | 1.3e-09 | 9.8e-10 | 1.4e-01 | 94 | SNAP91 |
23 | 6 | 100257579 | 102026932 | 2 | 1 | 7.5e-12 | 4.1e-12 | 1.0e+00 | 100 | ASCC3 |
24 | 6 | 104478130 | 106323464 | 4 | 11 | 7.9e-77 | 1.1e-112 | NaN | NaN | BVES HACE1 LIN28B POPDC3 |
25 | 6 | 108183628 | 109704062 | 1 | 1 | 1.4e-07 | 2.2e-10 | 3.4e-04 | 68 | FOXO3 |
26 | 6 | 125970401 | 127355237 | 1 | 1 | 3.5e-16 | 1.3e-16 | 1.0e+00 | 100 | CENPW |
27 | 6 | 146826657 | 148410391 | 2 | 1 | 2.6e-08 | 2.2e-08 | 2.8e-01 | 96 | STXBP5 |
28 | 6 | 151030107 | 152470136 | 2 | 1 | 2.1e-09 | 1.3e-08 | 7.0e-02 | 90 | RMND1 |
29 | 7 | 32098935 | 33489728 | 1 | 1 | 3.0e-07 | 2.9e-06 | 2.0e-01 | 92 | RP11-225B17.2 |
30 | 7 | 73425238 | 75842792 | 12 | 4 | 4.8e-13 | 3.3e-10 | NaN | NaN | PMS2P3 POM121C STAG3L2 |
31 | 7 | 99008415 | 100411278 | 1 | 1 | 2.4e-07 | 8.8e-07 | 2.0e-01 | 93 | TAF6 |
32 | 9 | 110998007 | 112581047 | 5 | 1 | 1.2e-10 | 1.6e-09 | 7.8e-01 | 100 | C9orf5 |
33 | 9 | 126844856 | 128643415 | 2 | 3 | 2.1e-10 | 2.1e-11 | 7.9e-08 | 36 | OLFML2A PPP6C |
34 | 10 | 64195778 | 65606229 | 1 | 1 | 1.3e-07 | 4.6e-07 | 1.0e+00 | 100 | NRBF2 |
35 | 10 | 96682514 | 98113333 | 2 | 2 | 3.7e-09 | 3.6e-17 | 3.4e-07 | 63 | ALDH18A1 CC2D2B |
36 | 10 | 122989048 | 124407934 | 1 | 1 | 1.4e-07 | 1.9e-06 | 6.8e-03 | 68 | RP11-500G22.2 |
37 | 11 | 7714238 | 9679183 | 6 | 1 | 7.4e-13 | 1.8e-15 | 1.7e-04 | 78 | RP11-152H18.3 |
38 | 11 | 12611333 | 14105497 | 1 | 1 | 6.7e-08 | 5.2e-15 | 1.5e-08 | 48 | ARNTL |
39 | 11 | 16532857 | 18068163 | 1 | 1 | 7.8e-11 | 1.1e-10 | 1.8e-05 | 56 | NUCB2 |
40 | 11 | 27792891 | 28602221 | 2 | 1 | 2.0e-09 | 4.7e-08 | 6.9e-01 | 100 | KIF18A |
41 | 11 | 42881882 | 44596817 | 2 | 1 | 5.1e-09 | 2.0e-10 | 6.7e-04 | 71 | RP11-613D13.5 |
42 | 11 | 46543524 | 48485877 | 10 | 7 | 3.1e-12 | 1.7e-09 | 1.0e+00 | 100 | C1QTNF4 MADD MTCH2 NDUFS3 NR1H3 |
43 | 11 | 64948277 | 66333072 | 3 | 1 | 9.1e-09 | 6.6e-08 | 1.0e+00 | 100 | FIBP |
44 | 11 | 77027574 | 78979645 | 4 | 1 | 1.0e-09 | 6.7e-10 | 6.9e-03 | 81 | GAB2 |
45 | 11 | 100624096 | 102570548 | 2 | 1 | 4.8e-17 | 1.3e-18 | 1.0e+00 | 100 | TRPC6 |
46 | 11 | 122058476 | 123525464 | 2 | 2 | 2.6e-32 | 4.2e-33 | 1.0e+00 | 100 | C11orf63 |
47 | 12 | 48605088 | 50000387 | 1 | 1 | 1.4e-07 | 5.4e-07 | 2.3e-01 | 94 | CCDC65 |
48 | 12 | 120502726 | 122037099 | 1 | 1 | 1.8e-07 | 1.2e-07 | 7.8e-03 | 75 | SPPL3 |
49 | 13 | 39533590 | 41063028 | 1 | 2 | 1.6e-07 | 1.8e-09 | 4.8e-03 | 78 | COG6 |
50 | 14 | 60168943 | 61664530 | 1 | 1 | 7.1e-09 | 2.1e-15 | 3.4e-08 | 52 | C14orf39 |
51 | 14 | 100104329 | 101533384 | 2 | 2 | 4.0e-11 | 7.1e-16 | 2.3e-01 | 98 | WARS WDR25 |
52 | 15 | 40778506 | 42301497 | 5 | 1 | 9.1e-14 | 5.3e-12 | 1.2e-01 | 95 | CHP |
53 | 15 | 59941722 | 61470359 | 2 | 2 | 7.9e-11 | 2.3e-17 | 5.8e-05 | 78 | ANXA2 NARG2 |
54 | 15 | 63687200 | 65137171 | 1 | 1 | 3.0e-07 | 4.0e-07 | 1.0e+00 | 100 | SNX1 |
55 | 15 | 67138238 | 68789191 | 2 | 1 | 1.2e-09 | 1.9e-09 | 4.1e-02 | 88 | MAP2K5 |
56 | 15 | 88358250 | 89773505 | 1 | 1 | 3.9e-13 | 1.2e-13 | 4.6e-02 | 93 | DET1 |
57 | 16 | 13697975 | 14759768 | 1 | 1 | 2.0e-08 | 1.9e-19 | 1.2e-12 | 38 | RP11-65J21.3 |
58 | 16 | 19022448 | 20596558 | 4 | 1 | 3.0e-10 | 1.2e-09 | 1.0e+00 | 100 | GPRC5B |
59 | 16 | 28825605 | 31026427 | 21 | 1 | 5.1e-12 | 2.8e-09 | 1.7e-01 | 95 | ASPHD1 |
60 | 16 | 52828325 | 54235440 | 1 | 1 | 3.8e-09 | 1.7e-38 | 4.5e-31 | 20 | AKTIP |
61 | 16 | 68901284 | 70725815 | 8 | 7 | 1.7e-16 | 3.8e-23 | NaN | NaN | CLEC18A NFAT5 PDXDC2P WWP2 |
62 | 17 | 42413481 | 43570226 | 1 | 1 | 1.5e-07 | 8.8e-08 | 1.5e-01 | 93 | DCAKD |
63 | 17 | 52350677 | 54097059 | 3 | 1 | 1.6e-10 | 1.8e-10 | 3.1e-01 | 97 | HLF |
64 | 17 | 78966915 | 79461486 | 1 | 1 | 6.3e-08 | 8.4e-08 | 1.7e-02 | 80 | C17orf89 |
65 | 18 | 2912920 | 4304557 | 1 | 1 | 8.1e-11 | 1.1e-11 | 7.0e-03 | 84 | DLGAP1-AS2 |
66 | 18 | 43698447 | 46153595 | 5 | 7 | 4.9e-17 | 2.6e-24 | NaN | NaN | HDHD2 PIAS2 SMAD2 |
67 | 19 | 588305 | 2560423 | 5 | 2 | 1.0e-11 | 4.8e-11 | 3.5e-01 | 98 | KLF16 REXO1 |
68 | 19 | 9250370 | 11140703 | 4 | 1 | 2.0e-23 | 4.0e-20 | 1.9e-01 | 98 | OLFM2 |
69 | 19 | 12309739 | 13720731 | 1 | 1 | 2.0e-07 | 3.8e-06 | 9.3e-01 | 100 | GCDH |
70 | 19 | 14764742 | 16186772 | 1 | 1 | 2.7e-07 | 2.5e-07 | 1.0e+00 | 100 | AKAP8 |
71 | 19 | 17963878 | 18503019 | 1 | 1 | 3.2e-08 | 8.6e-08 | 5.4e-01 | 99 | MAST3 |
72 | 19 | 35448803 | 36956110 | 8 | 1 | 4.9e-13 | 1.0e-11 | 5.4e-02 | 92 | UPK1A |
73 | 21 | 39849553 | 41498432 | 5 | 1 | 2.7e-15 | 1.1e-13 | 1.9e-02 | 90 | PSMG1 |
74 | 22 | 21798199 | 23032448 | 4 | 1 | 1.6e-08 | 5.6e-08 | 1.9e-01 | 94 | LL22NC03-86G7.1 |
75 | 22 | 31195775 | 32708691 | 1 | 1 | 2.4e-07 | 1.4e-07 | 9.7e-04 | 61 | SFI1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Cells EBV-transformed lymphocytes | 11 | 0.77 | 2.8 |
GTEx | Lung | 29 | 1.01 | 2.7 |
GTEx | Ovary | 5 | 0.55 | 2.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 12 | 1.17 | 2.7 |
GTEx | Adipose Subcutaneous | 25 | 0.72 | 2.6 |
GTEx | Adipose Visceral Omentum | 19 | 0.93 | 2.6 |
GTEx | Brain Cerebellum | 14 | 0.71 | 2.6 |
GTEx | Brain Frontal Cortex BA9 | 7 | 0.76 | 2.6 |
GTEx | Esophagus Gastroesophageal Junction | 9 | 0.62 | 2.6 |
GTEx | Esophagus Muscularis | 23 | 0.71 | 2.6 |
GTEx | Heart Atrial Appendage | 15 | 0.95 | 2.6 |
GTEx | Heart Left Ventricle | 15 | 0.98 | 2.6 |
GTEx | Muscle Skeletal | 27 | 0.93 | 2.6 |
GTEx | Stomach | 14 | 0.96 | 2.6 |
GTEx | Thyroid | 26 | 0.65 | 2.6 |
GTEx | Artery Aorta | 19 | 0.64 | 2.5 |
GTEx | Artery Coronary | 8 | 0.68 | 2.5 |
GTEx | Artery Tibial | 28 | 0.74 | 2.5 |
GTEx | Brain Caudate basal ganglia | 7 | 0.76 | 2.5 |
GTEx | Brain Cerebellar Hemisphere | 10 | 0.67 | 2.5 |
GTEx | Brain Cortex | 5 | 0.48 | 2.5 |
GTEx | Brain Hippocampus | 1 | 0.19 | 2.5 |
GTEx | Breast Mammary Tissue | 16 | 0.81 | 2.5 |
GTEx | Cells Transformed fibroblasts | 30 | 0.71 | 2.5 |
GTEx | Colon Sigmoid | 11 | 0.75 | 2.5 |
GTEx | Colon Transverse | 13 | 0.63 | 2.5 |
GTEx | Esophagus Mucosa | 22 | 0.66 | 2.5 |
GTEx | Nerve Tibial | 28 | 0.65 | 2.5 |
GTEx | Prostate | 3 | 0.36 | 2.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 17 | 0.69 | 2.5 |
GTEx | Skin Sun Exposed Lower leg | 19 | 0.52 | 2.5 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.44 | 2.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 10 | 0.94 | 2.5 |
GTEx | Adrenal Gland | 4 | 0.27 | 2.4 |
GTEx | Brain Nucleus accumbens basal ganglia | 3 | 0.35 | 2.4 |
GTEx | Breast Mammary Tissue (Female) | 10 | 0.61 | 2.4 |
GTEx | Pancreas | 7 | 0.43 | 2.4 |
GTEx | Pituitary | 7 | 0.63 | 2.4 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.87 | 2.4 |
GTEx | Spleen | 6 | 0.43 | 2.4 |
GTEx | Testis | 22 | 0.70 | 2.4 |
GTEx | Uterus | 0 | 0.00 | 2.4 |
GTEx | Vagina | 1 | 0.16 | 2.4 |
GTEx | Whole Blood | 9 | 0.45 | 2.4 |
ROSMAP | Brain Pre-frontal Cortex | 43 | 0.98 | 2.4 |
CommonMind | Brain Pre-frontal Cortex | 35 | 0.65 | 2.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.46 | 2.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 15 | 0.73 | 2.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 8 | 0.48 | 2.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 10 | 0.75 | 2.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 4 | 0.58 | 2.4 |
GTEx | Brain Hypothalamus | 2 | 0.34 | 2.3 |
GTEx | Brain Putamen basal ganglia | 3 | 0.48 | 2.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 7 | 0.42 | 2.3 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 27 | 0.61 | 2.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 10 | 0.48 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 19 | 0.70 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 26 | 0.63 | 2.3 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 23 | 0.53 | 2.3 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 6 | 0.54 | 2.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 19 | 0.76 | 2.3 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 12 | 0.75 | 2.3 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 27 | 0.58 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 7 | 1.31 | 2.3 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 14 | 0.83 | 2.3 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 8 | 0.63 | 2.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 33 | 0.64 | 2.3 |
GTEx | Breast Mammary Tissue (Male) | 5 | 0.42 | 2.2 |
METSIM | Adipose | 23 | 0.50 | 2.2 |
NTR | Blood | 9 | 0.37 | 2.2 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 16 | 0.54 | 2.2 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 3 | 0.59 | 2.2 |
GTEx | Liver | 2 | 0.28 | 2.1 |
YFS | Blood | 23 | 0.50 | 2.1 |