1987 significantly associated models · 322 unique genes
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# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 62552269 | 64021096 | 1 | 1 | 6.6e-14 | 3.5e-24 | 1.3e-12 | 51 | ATG4C |
2 | 1 | 65294331 | 67944069 | 4 | 4 | 8.1e-23 | 9.6e-57 | 3.9e-22 | 63 | LEPR PDE4B SGIP1 |
3 | 1 | 119761038 | 120687115 | 2 | 1 | 5.9e-09 | 7.8e-12 | 2.7e-04 | 72 | RP5-1042I8.7 |
4 | 1 | 149854324 | 151846517 | 16 | 8 | 6.9e-20 | 2.4e-20 | 1.0e+00 | 100 | ANXA9 ARNT CTSS HORMAD1 RP11-316M1.12 RP11-54A4.2 |
5 | 1 | 154282146 | 156450740 | 19 | 2 | 3.9e-18 | 3.7e-18 | 1.0e+00 | 100 | MTX1P1 ZBTB7B |
6 | 1 | 204358667 | 205921859 | 5 | 1 | 1.2e-27 | 2.0e-38 | 7.2e-14 | 67 | RBBP5 |
7 | 1 | 211765485 | 213229337 | 1 | 1 | 1.4e-08 | 9.0e-09 | 1.0e+00 | 100 | PPP2R5A |
8 | 2 | 24348096 | 26088769 | 5 | 2 | 6.0e-15 | 3.3e-15 | 2.6e-01 | 98 | DNAJC27 POMC |
9 | 2 | 26883355 | 28402863 | 7 | 1 | 4.2e-11 | 4.1e-14 | 5.3e-05 | 71 | FNDC4 |
10 | 2 | 37453629 | 39300259 | 6 | 8 | 1.6e-30 | 1.8e-43 | NaN | NaN | ATL2 CYP1B1 FAM82A1 RMDN2 |
11 | 2 | 62211083 | 63968655 | 1 | 1 | 8.8e-09 | 1.5e-06 | 4.3e-01 | 97 | EHBP1 |
12 | 2 | 171683107 | 173114238 | 1 | 2 | 1.5e-13 | 3.4e-16 | 2.3e-01 | 98 | CYBRD1 |
13 | 3 | 51860817 | 53573517 | 6 | 1 | 2.5e-08 | 1.1e-07 | 4.6e-01 | 98 | RP5-966M1.6 |
14 | 3 | 84317575 | 86808226 | 1 | 1 | 1.2e-21 | 6.8e-25 | 1.0e-04 | 86 | CADM2 |
15 | 3 | 97736804 | 99315838 | 3 | 1 | 9.0e-10 | 4.0e-10 | 1.2e-02 | 84 | ST3GAL6-AS1 |
16 | 3 | 155544380 | 157226796 | 6 | 12 | 5.4e-18 | 5.0e-29 | NaN | NaN | LEKR1 LINC00886 LOC100287227 METTL15P1 RP11-305K5.1 SSR3 |
17 | 5 | 12225 | 1214264 | 2 | 1 | 8.3e-11 | 1.8e-05 | 5.7e-01 | 98 | CTD-2228K2.7 |
18 | 5 | 33241655 | 34706321 | 2 | 3 | 9.7e-35 | 0.0e+00 | 0.0e+00 | 11 | AMACR RXFP3 |
19 | 5 | 59474215 | 61145102 | 2 | 2 | 3.6e-10 | 5.4e-11 | 3.0e-05 | 60 | ERCC8 NDUFAF2 |
20 | 5 | 138753725 | 140337279 | 2 | 1 | 2.7e-08 | 1.5e-06 | 2.2e-01 | 94 | LINC01024 |
21 | 5 | 176040488 | 177260129 | 2 | 1 | 7.9e-11 | 4.2e-10 | 7.2e-01 | 100 | PRELID1 |
22 | 6 | 202452 | 1408677 | 3 | 12 | 3.3e-193 | 0.0e+00 | NaN | NaN | EXOC2 RP11-532F6.3 |
23 | 6 | 35397127 | 36804187 | 1 | 1 | 1.4e-07 | 1.5e-08 | 2.7e-04 | 59 | MAPK13 |
24 | 6 | 41073638 | 42587818 | 2 | 1 | 6.6e-12 | 5.6e-12 | 1.0e+00 | 100 | MED20 |
25 | 6 | 51665597 | 53131343 | 1 | 1 | 2.5e-08 | 1.2e-08 | 1.8e-02 | 83 | TRAM2 |
26 | 6 | 81504236 | 83161854 | 1 | 1 | 3.0e-07 | 1.4e-06 | 7.1e-05 | 32 | FAM46A |
27 | 6 | 145125929 | 146983441 | 5 | 1 | 2.4e-10 | 9.5e-12 | 9.8e-03 | 86 | EPM2A |
28 | 7 | 16622785 | 18084843 | 2 | 1 | 1.9e-10 | 1.1e-29 | 9.4e-28 | 7 | AHR |
29 | 7 | 27623776 | 28468319 | 1 | 1 | 5.0e-18 | 1.0e-19 | 7.8e-04 | 86 | JAZF1 |
30 | 7 | 104060000 | 105736971 | 1 | 1 | 2.7e-07 | 1.3e-07 | 5.6e-07 | 10 | SRPK2 |
31 | 8 | 41318439 | 42727452 | 1 | 1 | 7.5e-08 | 2.1e-07 | 1.4e-01 | 92 | AP3M2 |
32 | 8 | 115726164 | 117519662 | 1 | 2 | 3.3e-40 | 1.6e-98 | 1.5e-54 | 46 | TRPS1 |
33 | 8 | 144294773 | 145744618 | 2 | 1 | 2.2e-09 | 7.5e-08 | 3.1e-01 | 96 | PARP10 |
34 | 9 | 11988659 | 13977570 | 4 | 7 | 9.2e-63 | 3.0e-81 | NaN | NaN | C9orf150 LURAP1L MPDZ TYRP1 |
35 | 9 | 15714465 | 18201083 | 2 | 6 | 1.1e-54 | 1.7e-232 | 4.9e-125 | 47 | BNC2 CNTLN |
36 | 9 | 26851195 | 28272794 | 1 | 1 | 3.5e-10 | 9.9e-10 | 9.1e-02 | 92 | C9orf72 |
37 | 10 | 5039564 | 6576881 | 2 | 1 | 8.4e-14 | 9.5e-13 | 5.3e-01 | 99 | GDI2 |
38 | 10 | 63856856 | 65606229 | 3 | 1 | 1.2e-13 | 1.7e-13 | 2.1e-02 | 90 | NRBF2 |
39 | 10 | 101213253 | 102632622 | 1 | 1 | 2.1e-07 | 5.2e-11 | 4.1e-11 | -1 | ERLIN1 |
40 | 11 | 15288270 | 17459851 | 1 | 1 | 3.7e-11 | 9.6e-14 | 2.4e-04 | 76 | SOX6 |
41 | 11 | 47193566 | 47695840 | 1 | 1 | 4.6e-08 | 3.1e-07 | 1.2e-01 | 91 | PSMC3 |
42 | 11 | 67976812 | 69623641 | 4 | 7 | 5.6e-55 | 4.0e-49 | NaN | NaN | IGHMBP2 RP11-554A11.9 TPCN2 |
43 | 11 | 77027574 | 78828001 | 4 | 1 | 1.6e-10 | 3.1e-11 | 2.9e-02 | 89 | USP35 |
44 | 11 | 87146898 | 90616949 | 5 | 12 | 1.2e-38 | 0.0e+00 | 0.0e+00 | 17 | CTSC NAALAD2 NOX4 RAB38 |
45 | 12 | 40388337 | 42165804 | 1 | 1 | 1.1e-09 | 7.6e-10 | 1.0e+00 | 100 | CNTN1 |
46 | 12 | 55933641 | 57318731 | 2 | 2 | 1.4e-08 | 1.0e-06 | 8.0e-01 | 100 | OBFC2B SILV |
47 | 12 | 87841866 | 89262140 | 1 | 3 | 1.1e-35 | 1.2e-38 | 1.3e-03 | 94 | TMTC3 |
48 | 12 | 124700826 | 126101198 | 1 | 1 | 1.9e-09 | 1.3e-14 | 7.0e-07 | 59 | UBC |
49 | 13 | 94398894 | 95827872 | 1 | 1 | 4.8e-18 | 3.7e-18 | 6.7e-02 | 96 | DCT |
50 | 13 | 113081675 | 114502416 | 1 | 1 | 9.8e-08 | 8.7e-72 | 1.3e-65 | 9 | F10 |
51 | 14 | 77106456 | 78542305 | 1 | 1 | 1.7e-07 | 4.6e-05 | 4.2e-01 | 96 | TMED8 |
52 | 14 | 91738696 | 93201999 | 1 | 1 | 1.7e-08 | 6.9e-55 | 4.7e-48 | 13 | TRIP11 |
53 | 15 | 27302102 | 28535266 | 2 | 4 | 6.4e-283 | 8.1e-305 | 3.0e-80 | 74 | HERC2 OCA2 |
54 | 16 | 4144898 | 4715012 | 1 | 1 | 2.3e-07 | 3.3e-07 | 1.0e+00 | 100 | CORO7 |
55 | 16 | 13315655 | 14742400 | 1 | 1 | 2.2e-12 | 1.4e-15 | 2.0e-14 | 8 | ERCC4 |
56 | 16 | 71070698 | 72838680 | 3 | 1 | 4.5e-10 | 3.6e-12 | 1.3e-03 | 78 | IST1 |
57 | 16 | 87834943 | 90172696 | 55 | 35 | 0.0e+00 | 0.0e+00 | NaN | NaN | ACSF3 APRT C16orf7 CBFA2T3 CHMP1A CPNE7 CTU2 CYBA DBNDD1 GALNS MC1R MGC23284 PIEZO1 RP11-46C24.7 RP11-830F9.5 RPL13 SPG7 TRAPPC2L VPS9D1 ZFPM1 ZNF276 ZNF778 |
58 | 17 | 45483229 | 46899254 | 1 | 1 | 1.4e-09 | 4.3e-06 | 8.6e-01 | 100 | SNX11 |
59 | 17 | 78810687 | 80357420 | 7 | 5 | 4.3e-12 | 1.7e-21 | NaN | NaN | C17orf70 MRPL12 NPLOC4 TSPAN10 |
60 | 20 | 21245244 | 21734758 | 1 | 1 | 2.1e-08 | 2.4e-07 | 1.0e+00 | 100 | NKX2-2 |
61 | 20 | 24738226 | 25451180 | 2 | 1 | 3.2e-11 | 4.8e-18 | 2.8e-10 | 47 | ENTPD6 |
62 | 20 | 29833609 | 36642760 | 72 | 54 | 0.0e+00 | 0.0e+00 | NaN | NaN | C20orf132 C20orf160 C20orf203 C20orf24 CBFA2T2 CEP250 CHMP4B COMMD7 DLGAP4 DNMT3B EDEM2 ITCH KIF3B MANBAL MAP1LC3A MAPRE1 MMP24 NCOA6 NDRG3 PLUNC RBL1 RP4-614O4.12 RP5-1085F17.3 RPL36P4 RPN2 SOGA1 TM9SF4 TP53INP2 TSPY26P UQCC ZNF341 |
63 | 21 | 43194459 | 43693693 | 1 | 1 | 1.2e-07 | 2.8e-11 | 5.2e-05 | 63 | C21orf121 |
64 | 22 | 37337772 | 40479448 | 7 | 3 | 1.6e-12 | 5.2e-13 | 8.5e-01 | 100 | MAFF SH3BP1 SYNGR1 |
65 | 22 | 44835936 | 46334133 | 5 | 4 | 2.5e-36 | 1.8e-65 | 1.7e-21 | 69 | C22orf9 CTA-217C2.1 LOC100506714 NUP50 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cortex | 16 | 1.55 | 35.0 |
GTEx | Stomach | 19 | 1.31 | 33.4 |
GTEx | Brain Cerebellum | 30 | 1.51 | 30.6 |
GTEx | Brain Cerebellar Hemisphere | 25 | 1.68 | 30.4 |
GTEx | Adrenal Gland | 28 | 1.92 | 29.4 |
GTEx | Colon Sigmoid | 21 | 1.44 | 27.6 |
GTEx | Breast Mammary Tissue (Male) | 21 | 1.76 | 25.1 |
GTEx | Small Intestine Terminal Ileum | 7 | 1.52 | 24.7 |
GTEx | Pituitary | 18 | 1.61 | 22.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 39 | 1.59 | 21.7 |
GTEx | Heart Atrial Appendage | 23 | 1.46 | 20.6 |
GTEx | Pancreas | 29 | 1.78 | 19.3 |
GTEx | Colon Transverse | 25 | 1.21 | 19.1 |
GTEx | Heart Left Ventricle | 20 | 1.31 | 19.0 |
GTEx | Artery Coronary | 10 | 0.84 | 17.6 |
GTEx | Adipose Subcutaneous | 45 | 1.29 | 16.9 |
GTEx | Prostate | 12 | 1.44 | 16.4 |
GTEx | Esophagus Muscularis | 45 | 1.39 | 16.3 |
GTEx | Spleen | 17 | 1.20 | 15.9 |
GTEx | Thyroid | 52 | 1.30 | 15.4 |
GTEx | Artery Aorta | 40 | 1.34 | 15.1 |
GTEx | Lung | 38 | 1.32 | 14.8 |
METSIM | Adipose | 54 | 1.17 | 14.3 |
GTEx | Breast Mammary Tissue (Female) | 29 | 1.76 | 13.5 |
GTEx | Nerve Tibial | 57 | 1.32 | 13.1 |
GTEx | Ovary | 11 | 1.21 | 13.1 |
GTEx | Artery Tibial | 43 | 1.14 | 13.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 39 | 1.43 | 13.0 |
GTEx | Cells Transformed fibroblasts | 61 | 1.45 | 12.9 |
GTEx | Brain Hypothalamus | 10 | 1.69 | 12.8 |
GTEx | Skin Sun Exposed Lower leg | 55 | 1.51 | 12.8 |
CommonMind | Brain Pre-frontal Cortex | 72 | 1.34 | 12.7 |
GTEx | Uterus | 8 | 1.41 | 11.2 |
GTEx | Whole Blood | 33 | 1.66 | 11.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 46 | 1.07 | 11.1 |
GTEx | Testis | 45 | 1.43 | 11.0 |
GTEx | Muscle Skeletal | 44 | 1.52 | 10.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 47 | 1.15 | 10.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 17 | 0.83 | 10.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 19 | 1.14 | 10.2 |
GTEx | Esophagus Mucosa | 44 | 1.32 | 10.1 |
The Cancer Genome Atlas | Thyroid Carcinoma | 51 | 0.99 | 9.9 |
GTEx | Brain Frontal Cortex BA9 | 17 | 1.84 | 9.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 24 | 1.42 | 9.8 |
GTEx | Breast Mammary Tissue | 31 | 1.57 | 9.7 |
GTEx | Esophagus Gastroesophageal Junction | 17 | 1.18 | 9.3 |
GTEx | Adipose Visceral Omentum | 22 | 1.08 | 9.0 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 51 | 1.10 | 8.5 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 23 | 1.39 | 8.4 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 29 | 0.99 | 8.0 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 9 | 1.76 | 7.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 23 | 1.11 | 7.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 50 | 1.13 | 6.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 12 | 1.39 | 6.8 |
GTEx | Vagina | 7 | 1.10 | 6.8 |
YFS | Blood | 41 | 0.89 | 6.2 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 9 | 0.68 | 6.1 |
GTEx | Cells EBV-transformed lymphocytes | 23 | 1.62 | 5.8 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 34 | 1.35 | 5.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 13 | 1.18 | 5.4 |
GTEx | Brain Hippocampus | 8 | 1.52 | 5.1 |
GTEx | Brain Putamen basal ganglia | 9 | 1.44 | 5.1 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 7 | 1.31 | 5.1 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 15 | 1.17 | 5.0 |
NTR | Blood | 23 | 0.96 | 4.6 |
GTEx | Liver | 12 | 1.67 | 4.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 18 | 1.13 | 4.2 |
GTEx | Brain Caudate basal ganglia | 13 | 1.41 | 4.1 |
The Cancer Genome Atlas | Esophageal Carcinoma | 9 | 1.31 | 4.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 11 | 1.03 | 4.0 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 13 | 1.27 | 3.9 |
ROSMAP | Brain Pre-frontal Cortex | 36 | 0.82 | 3.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 8 | 0.73 | 3.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.72 | 2.5 |