269 significantly associated models · 43 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 199443880 | 201021954 | 1 | 1 | 8.9e-08 | 2.0e-09 | 3.8e-03 | 77 | SATB2 |
2 | 3 | 84317575 | 86808226 | 1 | 2 | 3.7e-11 | 1.1e-11 | 7.9e-02 | 93 | CADM2 |
3 | 8 | 8092025 | 11748645 | 13 | 1 | 2.2e-11 | 5.1e-10 | 1.3e-01 | 94 | AF131215.2 |
4 | 11 | 46578400 | 48559571 | 12 | 1 | 2.9e-17 | 4.6e-16 | 5.9e-01 | 100 | NUP160 |
5 | 14 | 74658029 | 76064624 | 1 | 1 | 1.4e-07 | 3.7e-08 | 1.0e-01 | 91 | DLST |
6 | 16 | 27691641 | 29595483 | 13 | 1 | 3.7e-09 | 1.1e-08 | 8.3e-02 | 91 | SH2B1 |
7 | 18 | 57349900 | 58729694 | 1 | 1 | 2.2e-08 | 9.4e-12 | 8.0e-06 | 57 | MC4R |
8 | 20 | 17870542 | 19441650 | 1 | 1 | 6.4e-08 | 5.6e-08 | 1.0e+00 | 100 | DTD1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Liver | 1 | 0.139 | 2.0 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.9 |
GTEx | Brain Cortex | 3 | 0.290 | 1.8 |
GTEx | Ovary | 5 | 0.551 | 1.8 |
GTEx | Adipose Visceral Omentum | 3 | 0.147 | 1.7 |
GTEx | Artery Coronary | 2 | 0.169 | 1.7 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 1.7 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.7 |
GTEx | Brain Hypothalamus | 1 | 0.169 | 1.7 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue | 8 | 0.405 | 1.7 |
GTEx | Breast Mammary Tissue (Female) | 6 | 0.365 | 1.7 |
GTEx | Colon Sigmoid | 5 | 0.342 | 1.7 |
GTEx | Colon Transverse | 6 | 0.291 | 1.7 |
GTEx | Esophagus Muscularis | 8 | 0.248 | 1.7 |
GTEx | Heart Atrial Appendage | 1 | 0.063 | 1.7 |
GTEx | Muscle Skeletal | 6 | 0.208 | 1.7 |
GTEx | Pituitary | 3 | 0.269 | 1.7 |
GTEx | Prostate | 2 | 0.240 | 1.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 6 | 0.244 | 1.7 |
GTEx | Spleen | 4 | 0.283 | 1.7 |
GTEx | Stomach | 4 | 0.275 | 1.7 |
GTEx | Uterus | 2 | 0.353 | 1.7 |
GTEx | Vagina | 3 | 0.472 | 1.7 |
GTEx | Whole Blood | 4 | 0.201 | 1.7 |
ROSMAP | Brain Pre-frontal Cortex | 8 | 0.182 | 1.7 |
GTEx | Adipose Subcutaneous | 4 | 0.115 | 1.6 |
GTEx | Adrenal Gland | 4 | 0.275 | 1.6 |
GTEx | Artery Aorta | 7 | 0.235 | 1.6 |
GTEx | Artery Tibial | 7 | 0.186 | 1.6 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.6 |
GTEx | Brain Cerebellar Hemisphere | 3 | 0.201 | 1.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.070 | 1.6 |
GTEx | Cells Transformed fibroblasts | 9 | 0.214 | 1.6 |
GTEx | Esophagus Gastroesophageal Junction | 2 | 0.138 | 1.6 |
GTEx | Esophagus Mucosa | 9 | 0.271 | 1.6 |
GTEx | Heart Left Ventricle | 6 | 0.392 | 1.6 |
GTEx | Lung | 5 | 0.174 | 1.6 |
GTEx | Nerve Tibial | 6 | 0.139 | 1.6 |
GTEx | Pancreas | 3 | 0.184 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 8 | 0.220 | 1.6 |
GTEx | Testis | 5 | 0.158 | 1.6 |
GTEx | Thyroid | 5 | 0.125 | 1.6 |
NTR | Blood | 2 | 0.083 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 4 | 0.242 | 1.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.195 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 2 | 0.151 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.6 |
GTEx | Brain Cerebellum | 3 | 0.151 | 1.5 |
METSIM | Adipose | 3 | 0.065 | 1.5 |
YFS | Blood | 4 | 0.087 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 6 | 0.112 | 1.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 7 | 0.159 | 1.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 7 | 0.339 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.5 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 6 | 0.220 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 4 | 0.098 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 5 | 0.116 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.452 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 4 | 0.136 | 1.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 3 | 0.120 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 2 | 0.126 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 2 | 0.120 | 1.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 5 | 0.108 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 2 | 0.119 | 1.5 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 5 | 0.097 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 2 | 0.182 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.197 | 1.4 |