935 significantly associated models · 142 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 117211384 | 118766534 | 1 | 1 | 1.7e-07 | 5.4e-09 | 2.8e-04 | 61 | MAN1A2 |
2 | 1 | 153241677 | 154640423 | 1 | 1 | 5.6e-08 | 5.4e-07 | 1.4e-04 | 42 | CREB3L4 |
3 | 1 | 226371939 | 227873074 | 2 | 1 | 6.6e-09 | 3.8e-08 | 4.2e-01 | 98 | ADCK3 |
4 | 2 | 86483021 | 87126250 | 1 | 1 | 3.0e-07 | 1.4e-07 | 9.2e-02 | 90 | VPS24 |
5 | 2 | 147993969 | 149475737 | 2 | 1 | 4.1e-11 | 7.7e-10 | 1.3e-01 | 94 | ORC4L |
6 | 3 | 16154636 | 17814553 | 1 | 1 | 1.2e-07 | 3.2e-06 | 2.0e-01 | 92 | PLCL2 |
7 | 3 | 49598064 | 51398958 | 10 | 1 | 6.5e-11 | 1.9e-11 | 1.0e+00 | 100 | U73166.2 |
8 | 3 | 51539688 | 54077726 | 20 | 1 | 5.5e-15 | 4.8e-12 | 1.4e-01 | 96 | NEK4 |
9 | 3 | 84317575 | 86808226 | 1 | 1 | 2.9e-18 | 2.1e-19 | 1.0e+00 | 100 | CADM2 |
10 | 3 | 135273949 | 137261517 | 5 | 1 | 5.2e-12 | 1.9e-11 | 4.7e-01 | 99 | RP11-85F14.5 |
11 | 4 | 89947254 | 91439574 | 1 | 1 | 1.4e-09 | 2.6e-10 | 1.0e+00 | 100 | SNCA |
12 | 4 | 118707160 | 119423789 | 1 | 1 | 5.4e-09 | 1.7e-07 | 4.7e-02 | 86 | NDST3 |
13 | 5 | 64272107 | 65711805 | 1 | 1 | 2.1e-07 | 7.5e-07 | 2.5e-01 | 94 | SGTB |
14 | 5 | 86867897 | 88429077 | 4 | 1 | 6.8e-10 | 3.6e-10 | 1.0e-04 | 62 | TMEM161B |
15 | 5 | 101762909 | 103244640 | 1 | 1 | 2.7e-08 | 1.4e-08 | 1.9e-01 | 95 | PPIP5K2 |
16 | 8 | 9593924 | 10988275 | 1 | 1 | 9.6e-08 | 5.2e-09 | 1.5e-03 | 70 | RP11-981G7.1 |
17 | 9 | 85627408 | 87026235 | 1 | 1 | 4.6e-08 | 6.3e-07 | 4.7e-02 | 84 | RP11-522I20.3 |
18 | 9 | 95502571 | 96898436 | 1 | 1 | 8.2e-10 | 4.2e-09 | 3.8e-01 | 98 | RP11-165J3.6 |
19 | 9 | 97520168 | 98975128 | 1 | 1 | 1.8e-08 | 5.7e-08 | 4.5e-01 | 98 | PTCH1 |
20 | 9 | 127218258 | 128643415 | 2 | 1 | 1.2e-07 | 2.2e-07 | 1.0e+00 | 100 | PRPS1P2 |
21 | 10 | 103550604 | 105910221 | 11 | 2 | 9.9e-14 | 2.9e-13 | 6.6e-01 | 100 | AS3MT CALHM2 |
22 | 11 | 46578400 | 48559571 | 8 | 1 | 9.6e-14 | 3.3e-11 | 9.5e-01 | 100 | MADD |
23 | 11 | 112486568 | 113969669 | 3 | 2 | 6.6e-09 | 1.2e-09 | 3.7e-02 | 88 | ANKK1 DRD2 |
24 | 12 | 49065727 | 50619618 | 1 | 1 | 2.8e-07 | 1.8e-06 | 7.2e-01 | 99 | SPATS2 |
25 | 12 | 108763672 | 110704487 | 3 | 1 | 2.8e-10 | 2.4e-10 | 1.6e-01 | 95 | MMAB |
26 | 14 | 74424938 | 76239834 | 7 | 1 | 9.7e-14 | 1.2e-13 | 4.8e-03 | 86 | RPS6KL1 |
27 | 16 | 29412503 | 31860399 | 15 | 2 | 4.2e-11 | 1.6e-08 | 2.0e-01 | 95 | INO80E KAT8 |
28 | 17 | 19142226 | 20911204 | 3 | 1 | 7.2e-09 | 6.7e-08 | 1.5e-01 | 93 | RP11-78O7.2 |
29 | 17 | 42607368 | 45796313 | 20 | 1 | 1.9e-14 | 8.6e-14 | 4.3e-01 | 99 | MAPT |
30 | 17 | 78843139 | 79380547 | 1 | 1 | 7.1e-09 | 2.2e-09 | 5.1e-02 | 89 | AATK |
31 | 18 | 30921425 | 31568499 | 1 | 1 | 8.8e-08 | 3.3e-08 | 1.0e-01 | 91 | ASXL3 |
32 | 18 | 57349900 | 58729694 | 1 | 1 | 8.0e-08 | 4.9e-13 | 4.8e-07 | 52 | MC4R |
33 | 20 | 2496120 | 3897014 | 1 | 1 | 1.4e-07 | 5.0e-07 | 1.3e-02 | 76 | ITPA |
34 | 20 | 17776692 | 19441650 | 4 | 1 | 5.1e-09 | 1.1e-08 | 1.0e+00 | 100 | DTD1 |
35 | 20 | 32594714 | 34109427 | 1 | 1 | 4.5e-09 | 2.8e-06 | 4.7e-01 | 98 | NCOA6 |
36 | 22 | 40472399 | 42379813 | 3 | 1 | 5.4e-11 | 2.7e-10 | 4.5e-01 | 99 | SLC25A17 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Hippocampus | 8 | 1.53 | 2.7 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.08 | 2.6 |
GTEx | Brain Frontal Cortex BA9 | 10 | 1.08 | 2.5 |
GTEx | Liver | 10 | 1.40 | 2.5 |
GTEx | Ovary | 11 | 1.21 | 2.5 |
GTEx | Brain Cortex | 10 | 0.97 | 2.4 |
GTEx | Brain Putamen basal ganglia | 5 | 0.80 | 2.4 |
GTEx | Cells EBV-transformed lymphocytes | 16 | 1.13 | 2.4 |
GTEx | Colon Transverse | 21 | 1.02 | 2.4 |
GTEx | Heart Atrial Appendage | 13 | 0.82 | 2.4 |
GTEx | Pituitary | 15 | 1.35 | 2.4 |
GTEx | Spleen | 11 | 0.78 | 2.4 |
GTEx | Uterus | 8 | 1.41 | 2.4 |
GTEx | Adipose Visceral Omentum | 14 | 0.69 | 2.3 |
GTEx | Artery Coronary | 15 | 1.27 | 2.3 |
GTEx | Brain Caudate basal ganglia | 7 | 0.76 | 2.3 |
GTEx | Brain Nucleus accumbens basal ganglia | 12 | 1.39 | 2.3 |
GTEx | Breast Mammary Tissue | 15 | 0.76 | 2.3 |
GTEx | Breast Mammary Tissue (Female) | 16 | 0.98 | 2.3 |
GTEx | Esophagus Gastroesophageal Junction | 16 | 1.11 | 2.3 |
GTEx | Esophagus Muscularis | 24 | 0.74 | 2.3 |
GTEx | Heart Left Ventricle | 12 | 0.78 | 2.3 |
GTEx | Stomach | 10 | 0.69 | 2.3 |
GTEx | Vagina | 7 | 1.10 | 2.3 |
The Cancer Genome Atlas | Esophageal Carcinoma | 5 | 0.73 | 2.3 |
GTEx | Adrenal Gland | 10 | 0.69 | 2.2 |
GTEx | Artery Aorta | 23 | 0.77 | 2.2 |
GTEx | Brain Cerebellar Hemisphere | 12 | 0.81 | 2.2 |
GTEx | Brain Cerebellum | 15 | 0.76 | 2.2 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.2 |
GTEx | Breast Mammary Tissue (Male) | 9 | 0.76 | 2.2 |
GTEx | Colon Sigmoid | 15 | 1.03 | 2.2 |
GTEx | Esophagus Mucosa | 24 | 0.72 | 2.2 |
GTEx | Lung | 23 | 0.80 | 2.2 |
GTEx | Muscle Skeletal | 18 | 0.62 | 2.2 |
GTEx | Pancreas | 12 | 0.74 | 2.2 |
GTEx | Prostate | 7 | 0.84 | 2.2 |
GTEx | Skin Not Sun Exposed Suprapubic | 18 | 0.73 | 2.2 |
GTEx | Testis | 19 | 0.60 | 2.2 |
GTEx | Thyroid | 27 | 0.68 | 2.2 |
GTEx | Whole Blood | 10 | 0.50 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 26 | 0.59 | 2.2 |
GTEx | Artery Tibial | 19 | 0.51 | 2.1 |
GTEx | Cells Transformed fibroblasts | 22 | 0.52 | 2.1 |
GTEx | Nerve Tibial | 22 | 0.51 | 2.1 |
GTEx | Skin Sun Exposed Lower leg | 22 | 0.61 | 2.1 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 9 | 0.55 | 2.1 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 7 | 0.69 | 2.1 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 12 | 0.48 | 2.1 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 4 | 0.58 | 2.1 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 7 | 0.66 | 2.1 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 7 | 0.55 | 2.1 |
GTEx | Adipose Subcutaneous | 18 | 0.52 | 2.0 |
METSIM | Adipose | 21 | 0.46 | 2.0 |
NTR | Blood | 7 | 0.29 | 2.0 |
CommonMind | Brain Pre-frontal Cortex | 14 | 0.26 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 6 | 0.29 | 2.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 14 | 0.51 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 9 | 0.44 | 2.0 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 4 | 0.36 | 2.0 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 14 | 0.48 | 2.0 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 11 | 0.69 | 2.0 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 5 | 0.30 | 2.0 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.61 | 2.0 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 7 | 0.42 | 2.0 |
YFS | Blood | 11 | 0.24 | 1.9 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 14 | 0.32 | 1.9 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 5 | 0.46 | 1.9 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 17 | 0.42 | 1.9 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 11 | 0.26 | 1.9 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 16 | 0.35 | 1.9 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 1.9 |
The Cancer Genome Atlas | Thyroid Carcinoma | 20 | 0.39 | 1.9 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 1.9 |