185 significantly associated models · 35 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3 | 48012797 | 50267837 | 19 | 1 | 7.2e-12 | 3.4e-11 | 1.000 | 100 | USP4 |
2 | 3 | 166760899 | 168242895 | 1 | 1 | 1.4e-08 | 1.4e-05 | 0.262 | 93 | SERPINI1 |
3 | 4 | 3006043 | 3514695 | 1 | 1 | 3.1e-08 | 4.2e-08 | 0.035 | 85 | C4orf44 |
4 | 9 | 95502571 | 96898436 | 1 | 1 | 6.8e-09 | 1.4e-08 | 1.000 | 100 | RP11-165J3.6 |
5 | 11 | 46033104 | 47419663 | 1 | 1 | 2.3e-09 | 3.8e-07 | 0.072 | 88 | ZNF408 |
6 | 11 | 56742853 | 58178587 | 2 | 2 | 2.2e-07 | 4.8e-07 | 0.271 | 95 | MED19 ZDHHC5 |
7 | 12 | 108763672 | 110704487 | 5 | 1 | 4.0e-11 | 2.3e-10 | 0.029 | 88 | KCTD10 |
8 | 14 | 69272125 | 69954376 | 2 | 2 | 3.3e-08 | 6.6e-10 | 0.093 | 93 | DCAF5 EXD2 |
9 | 17 | 1594359 | 3287175 | 3 | 2 | 7.1e-09 | 2.4e-09 | 0.091 | 92 | PAFAH1B1 RP1-59D14.1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Cells EBV-transformed lymphocytes | 3 | 0.211 | 1.8 |
GTEx | Heart Left Ventricle | 2 | 0.131 | 1.8 |
GTEx | Liver | 1 | 0.139 | 1.8 |
GTEx | Ovary | 3 | 0.330 | 1.8 |
GTEx | Skin Not Sun Exposed Suprapubic | 6 | 0.244 | 1.8 |
GTEx | Small Intestine Terminal Ileum | 1 | 0.217 | 1.8 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.8 |
GTEx | Adipose Subcutaneous | 6 | 0.172 | 1.7 |
GTEx | Adipose Visceral Omentum | 4 | 0.196 | 1.7 |
GTEx | Artery Aorta | 4 | 0.134 | 1.7 |
GTEx | Artery Coronary | 3 | 0.254 | 1.7 |
GTEx | Brain Cortex | 2 | 0.193 | 1.7 |
GTEx | Brain Frontal Cortex BA9 | 4 | 0.433 | 1.7 |
GTEx | Breast Mammary Tissue | 4 | 0.203 | 1.7 |
GTEx | Cells Transformed fibroblasts | 6 | 0.143 | 1.7 |
GTEx | Colon Sigmoid | 4 | 0.274 | 1.7 |
GTEx | Colon Transverse | 6 | 0.291 | 1.7 |
GTEx | Esophagus Gastroesophageal Junction | 3 | 0.208 | 1.7 |
GTEx | Esophagus Muscularis | 2 | 0.062 | 1.7 |
GTEx | Heart Atrial Appendage | 2 | 0.127 | 1.7 |
GTEx | Lung | 7 | 0.244 | 1.7 |
GTEx | Muscle Skeletal | 3 | 0.104 | 1.7 |
GTEx | Nerve Tibial | 6 | 0.139 | 1.7 |
GTEx | Pancreas | 1 | 0.061 | 1.7 |
GTEx | Skin Sun Exposed Lower leg | 9 | 0.247 | 1.7 |
GTEx | Thyroid | 11 | 0.275 | 1.7 |
GTEx | Uterus | 2 | 0.353 | 1.7 |
GTEx | Vagina | 1 | 0.157 | 1.7 |
GTEx | Whole Blood | 2 | 0.100 | 1.7 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.7 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.6 |
GTEx | Artery Tibial | 4 | 0.106 | 1.6 |
GTEx | Brain Caudate basal ganglia | 3 | 0.326 | 1.6 |
GTEx | Brain Cerebellar Hemisphere | 1 | 0.067 | 1.6 |
GTEx | Brain Cerebellum | 2 | 0.101 | 1.6 |
GTEx | Brain Hippocampus | 1 | 0.191 | 1.6 |
GTEx | Brain Hypothalamus | 1 | 0.169 | 1.6 |
GTEx | Brain Putamen basal ganglia | 2 | 0.321 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Female) | 2 | 0.122 | 1.6 |
GTEx | Esophagus Mucosa | 6 | 0.181 | 1.6 |
GTEx | Pituitary | 3 | 0.269 | 1.6 |
GTEx | Prostate | 1 | 0.120 | 1.6 |
GTEx | Spleen | 1 | 0.071 | 1.6 |
GTEx | Stomach | 2 | 0.138 | 1.6 |
GTEx | Testis | 1 | 0.032 | 1.6 |
METSIM | Adipose | 2 | 0.043 | 1.6 |
NTR | Blood | 1 | 0.042 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 5 | 0.114 | 1.6 |
YFS | Blood | 4 | 0.087 | 1.6 |
CommonMind | Brain Pre-frontal Cortex | 3 | 0.056 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 2 | 0.045 | 1.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 1 | 0.091 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 3 | 0.110 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 4 | 0.098 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.195 | 1.6 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 4 | 0.136 | 1.6 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 2 | 0.080 | 1.6 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 1 | 0.060 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 3 | 0.065 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 1 | 0.019 | 1.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 1 | 0.116 | 1.5 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.060 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.023 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 1 | 0.063 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 1 | 0.059 | 1.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.4 |