956 significantly associated models · 187 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 10391536 | 12013869 | 4 | 2 | 8.5e-24 | 5.8e-84 | 1.5e-47 | 44 | MASP2 RP4-635E18.7 |
2 | 1 | 15829187 | 16844848 | 1 | 1 | 8.9e-08 | 1.9e-06 | 9.5e-03 | 70 | ARHGEF19 |
3 | 1 | 23994201 | 26380805 | 6 | 3 | 1.2e-21 | 2.2e-44 | 1.4e-46 | -5 | CLIC4 RCAN3 RP3-465N24.5 |
4 | 1 | 40628071 | 42021616 | 1 | 1 | 6.8e-08 | 6.2e-18 | 3.3e-13 | 29 | CITED4 |
5 | 1 | 117708477 | 120517959 | 3 | 2 | 8.9e-28 | 2.1e-33 | 2.5e-25 | 26 | GDAP2 WARS2 |
6 | 1 | 151313774 | 152712747 | 1 | 1 | 1.5e-12 | 1.1e-19 | 1.1e-08 | 60 | S100A11 |
7 | 1 | 152880672 | 154625632 | 2 | 2 | 1.2e-09 | 1.1e-09 | 1.0e+00 | 100 | CRTC2 S100A16 |
8 | 1 | 168932500 | 171407761 | 5 | 7 | 9.2e-36 | 2.6e-44 | 5.8e-01 | 100 | GORAB KIFAP3 PRRX1 SCYL3 |
9 | 2 | 31589414 | 33088870 | 2 | 1 | 6.2e-11 | 4.2e-22 | 1.1e-12 | 46 | SPAST |
10 | 2 | 42753863 | 44690514 | 2 | 2 | 3.3e-08 | 2.8e-11 | 1.3e-02 | 86 | PLEKHH2 ZFP36L2 |
11 | 2 | 66927859 | 68326904 | 1 | 2 | 9.4e-11 | 9.1e-21 | 1.2e-20 | 1 | ETAA1 |
12 | 2 | 69829251 | 71228388 | 1 | 1 | 7.8e-08 | 9.0e-06 | 2.3e-01 | 93 | FAM136A |
13 | 2 | 218736292 | 220632013 | 3 | 2 | 2.7e-08 | 1.8e-14 | 1.7e-06 | 61 | RP11-33O4.1 WNT6 |
14 | 2 | 239510492 | 240078905 | 1 | 1 | 4.3e-15 | 9.9e-48 | 1.8e-35 | 27 | TWIST2 |
15 | 2 | 241430049 | 242849135 | 2 | 2 | 7.2e-08 | 8.1e-07 | 1.0e-01 | 89 | ANO7 SEPT2 |
16 | 3 | 40537829 | 41986787 | 1 | 1 | 2.2e-08 | 1.4e-08 | 4.3e-02 | 87 | CTNNB1 |
17 | 3 | 124951821 | 127452273 | 2 | 2 | 3.8e-11 | 3.3e-27 | 1.5e-23 | 14 | ALG1L PLXNA1 |
18 | 3 | 134986214 | 136558759 | 1 | 1 | 8.4e-09 | 7.3e-09 | 1.0e+00 | 100 | PPP2R3A |
19 | 3 | 138380069 | 139954262 | 4 | 3 | 6.8e-22 | 2.4e-86 | 7.5e-61 | 30 | RBP1 RP11-219D15.3 |
20 | 3 | 140350567 | 141867638 | 1 | 1 | 3.3e-18 | 3.1e-19 | 1.0e+00 | 100 | ZBTB38 |
21 | 3 | 151262987 | 152878838 | 1 | 1 | 1.5e-14 | 8.8e-17 | 1.2e-09 | 46 | MBNL1 |
22 | 3 | 157127290 | 158951696 | 1 | 2 | 2.8e-08 | 6.7e-18 | 1.0e-08 | 56 | RSRC1 |
23 | 4 | 14764460 | 15315535 | 1 | 1 | 1.8e-07 | 3.9e-08 | 5.4e-02 | 88 | CPEB2 |
24 | 4 | 53494816 | 54762082 | 3 | 2 | 7.0e-10 | 2.7e-10 | 1.0e+00 | 100 | LNX1 SCFD2 |
25 | 4 | 80407869 | 82578407 | 3 | 2 | 7.5e-39 | 8.0e-40 | 1.0e+00 | 100 | C4orf22 PRDM8 |
26 | 4 | 107145847 | 108895012 | 1 | 1 | 5.2e-10 | 6.2e-13 | 6.0e-07 | 52 | DKK2 |
27 | 4 | 153688776 | 155252934 | 1 | 1 | 1.4e-08 | 1.1e-09 | 1.9e-02 | 85 | KIAA0922 |
28 | 5 | 121480516 | 123054717 | 3 | 2 | 1.9e-11 | 1.5e-20 | 2.7e-13 | 38 | CTB-36H16.2 SNX2 |
29 | 5 | 171053425 | 172577403 | 1 | 1 | 3.8e-12 | 9.8e-14 | 1.0e+00 | 100 | SH3PXD2B |
30 | 6 | 240232 | 940771 | 1 | 1 | 3.0e-07 | 2.3e-19 | 3.1e-16 | 18 | EXOC2 |
31 | 6 | 19840492 | 21930988 | 1 | 1 | 4.9e-08 | 2.4e-16 | 7.8e-17 | -3 | CDKAL1 |
32 | 6 | 37093486 | 38816574 | 1 | 1 | 1.1e-07 | 8.7e-08 | 3.0e-01 | 96 | ZFAND3 |
33 | 6 | 44079216 | 46043561 | 1 | 1 | 3.6e-14 | 7.8e-22 | 4.2e-12 | 48 | SUPT3H |
34 | 6 | 105033213 | 107467855 | 2 | 2 | 9.6e-12 | 2.9e-26 | 7.2e-19 | 30 | ATG5 PREP |
35 | 6 | 110883139 | 112286687 | 1 | 1 | 2.0e-07 | 9.5e-10 | 3.8e-14 | -53 | KIAA1919 |
36 | 6 | 125970401 | 127355237 | 2 | 2 | 7.4e-27 | 1.2e-27 | 1.6e-01 | 98 | CENPW TRMT11 |
37 | 6 | 130901240 | 131402416 | 1 | 1 | 1.5e-07 | 2.8e-11 | 1.5e-06 | 48 | LOC285733 |
38 | 6 | 169458730 | 170872572 | 1 | 1 | 3.9e-09 | 8.0e-11 | 2.2e-04 | 68 | ERMARD |
39 | 7 | 18364750 | 19854141 | 1 | 2 | 6.4e-75 | 1.8e-113 | 4.0e-48 | 58 | TWIST1 |
40 | 7 | 68365245 | 70954231 | 1 | 1 | 6.8e-09 | 1.2e-63 | 4.1e-60 | 6 | AUTS2 |
41 | 7 | 130101373 | 131880252 | 2 | 2 | 3.6e-12 | 4.3e-16 | 3.7e-04 | 81 | MKLN1-AS2 |
42 | 7 | 139519806 | 141031540 | 1 | 1 | 2.3e-08 | 7.0e-09 | 9.7e-03 | 80 | DENND2A |
43 | 8 | 77356394 | 78026317 | 1 | 1 | 7.9e-08 | 5.2e-11 | 2.3e-05 | 58 | ZFHX4 |
44 | 8 | 108216908 | 110190556 | 4 | 2 | 5.3e-19 | 2.3e-25 | 2.0e-09 | 67 | EMC2 RSPO2 |
45 | 9 | 12410173 | 13977570 | 1 | 1 | 7.5e-12 | 1.5e-12 | 3.7e-02 | 91 | MPDZ |
46 | 9 | 128394623 | 129961152 | 2 | 1 | 1.0e-11 | 1.5e-14 | 2.2e-05 | 70 | MVB12B |
47 | 10 | 31857752 | 33353843 | 1 | 1 | 2.8e-07 | 7.0e-11 | 5.3e-05 | 62 | EPC1 |
48 | 10 | 76664253 | 80383574 | 3 | 3 | 6.3e-31 | 1.8e-35 | 2.6e-08 | 80 | C10orf11 DLG5 |
49 | 10 | 125455780 | 127372751 | 4 | 2 | 2.1e-19 | 3.7e-34 | 1.4e-11 | 69 | LHPP METTL10 |
50 | 11 | 26693196 | 28189639 | 1 | 1 | 1.9e-09 | 6.7e-11 | 1.0e-02 | 84 | LGR4 |
51 | 11 | 43888194 | 45340720 | 1 | 1 | 2.3e-07 | 1.7e-30 | 2.3e-25 | 18 | CD82 |
52 | 11 | 60839578 | 62290719 | 4 | 1 | 1.8e-08 | 2.3e-08 | 1.0e+00 | 100 | TMEM258 |
53 | 11 | 68367007 | 69880281 | 1 | 1 | 5.0e-10 | 9.7e-10 | 1.5e-09 | 2 | MYEOV |
54 | 12 | 26099201 | 26643931 | 1 | 1 | 2.6e-20 | 1.4e-30 | 6.2e-12 | 64 | SSPN |
55 | 12 | 28611779 | 30185513 | 2 | 2 | 4.3e-11 | 9.1e-22 | 1.0e-10 | 55 | FAR2 RP11-996F15.2 |
56 | 12 | 49780778 | 51912062 | 7 | 1 | 4.8e-11 | 7.9e-10 | 6.3e-01 | 99 | ATF1 |
57 | 13 | 30336006 | 31886850 | 1 | 1 | 4.3e-11 | 4.4e-18 | 9.2e-17 | 8 | HMGB1 |
58 | 15 | 89921477 | 91886448 | 4 | 1 | 7.4e-13 | 8.4e-12 | 1.0e+00 | 100 | CRTC3 |
59 | 16 | 66666637 | 68802936 | 15 | 2 | 1.1e-18 | 4.6e-15 | 3.7e-01 | 99 | CTCF RLTPR |
60 | 17 | 1263564 | 2923933 | 2 | 1 | 1.3e-12 | 6.4e-12 | 1.3e-01 | 95 | SRR |
61 | 17 | 39399566 | 39838104 | 1 | 1 | 2.6e-08 | 1.4e-06 | 1.6e-01 | 92 | KRT34 |
62 | 17 | 42413481 | 45876022 | 32 | 8 | 5.6e-67 | 1.0e-58 | 1.0e+00 | 100 | ARL17B HEXIM1 KANSL1 LRRC37A LRRC37A17P LRRC37A2 LRRC37A4P |
63 | 17 | 54272304 | 55667722 | 1 | 1 | 3.9e-09 | 3.8e-32 | 7.0e-25 | 24 | MIR3614 |
64 | 17 | 78966915 | 79461486 | 1 | 1 | 1.5e-07 | 6.3e-07 | 1.0e-03 | 56 | C17orf89 |
65 | 18 | 52648055 | 53545463 | 1 | 1 | 7.9e-10 | 9.8e-12 | 1.9e-08 | 32 | TCF4 |
66 | 19 | 41165252 | 42626207 | 7 | 1 | 1.5e-13 | 2.4e-13 | 1.0e+00 | 100 | EXOSC5 |
67 | 20 | 21043102 | 22430527 | 1 | 1 | 7.1e-33 | 1.7e-125 | 3.7e-96 | 24 | RPL41P1 |
68 | 20 | 30716979 | 32128889 | 1 | 1 | 6.7e-08 | 1.1e-07 | 2.6e-01 | 96 | MAPRE1 |
69 | 20 | 32254831 | 34484245 | 4 | 1 | 3.4e-08 | 2.8e-07 | 5.0e-01 | 98 | TRPC4AP |
70 | 20 | 39114404 | 40683594 | 4 | 1 | 2.7e-15 | 6.9e-22 | 4.1e-08 | 67 | ZHX3 |
71 | 22 | 28478985 | 29894210 | 2 | 2 | 6.5e-13 | 2.7e-13 | 2.4e-01 | 97 | CCDC117 |
72 | 22 | 45566702 | 46074258 | 1 | 1 | 6.9e-08 | 2.2e-11 | 6.4e-05 | 64 | RIBC2 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 7 | 1.23 | 4.4 |
GTEx | Brain Hippocampus | 6 | 1.15 | 4.0 |
GTEx | Brain Hypothalamus | 7 | 1.19 | 4.0 |
GTEx | Artery Coronary | 16 | 1.35 | 3.9 |
GTEx | Vagina | 8 | 1.26 | 3.9 |
GTEx | Brain Putamen basal ganglia | 7 | 1.12 | 3.7 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.87 | 3.7 |
GTEx | Brain Nucleus accumbens basal ganglia | 10 | 1.16 | 3.6 |
GTEx | Brain Cortex | 10 | 0.97 | 3.5 |
GTEx | Brain Frontal Cortex BA9 | 12 | 1.30 | 3.5 |
GTEx | Breast Mammary Tissue (Male) | 11 | 0.92 | 3.5 |
GTEx | Ovary | 9 | 0.99 | 3.5 |
GTEx | Brain Caudate basal ganglia | 10 | 1.09 | 3.4 |
GTEx | Cells EBV-transformed lymphocytes | 14 | 0.98 | 3.4 |
GTEx | Esophagus Gastroesophageal Junction | 16 | 1.11 | 3.2 |
GTEx | Liver | 7 | 0.98 | 3.2 |
GTEx | Stomach | 17 | 1.17 | 3.2 |
GTEx | Pancreas | 14 | 0.86 | 3.1 |
GTEx | Prostate | 6 | 0.72 | 3.1 |
GTEx | Brain Cerebellar Hemisphere | 13 | 0.87 | 3.0 |
GTEx | Breast Mammary Tissue (Female) | 15 | 0.91 | 3.0 |
GTEx | Colon Sigmoid | 10 | 0.68 | 3.0 |
GTEx | Pituitary | 11 | 0.99 | 3.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 4 | 0.58 | 2.9 |
GTEx | Breast Mammary Tissue | 14 | 0.71 | 2.8 |
GTEx | Colon Transverse | 15 | 0.73 | 2.8 |
GTEx | Heart Atrial Appendage | 11 | 0.70 | 2.8 |
GTEx | Heart Left Ventricle | 11 | 0.72 | 2.8 |
GTEx | Spleen | 11 | 0.78 | 2.8 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.72 | 2.8 |
GTEx | Adrenal Gland | 13 | 0.89 | 2.7 |
GTEx | Brain Cerebellum | 15 | 0.76 | 2.7 |
GTEx | Lung | 23 | 0.80 | 2.7 |
GTEx | Adipose Visceral Omentum | 11 | 0.54 | 2.6 |
GTEx | Artery Aorta | 23 | 0.77 | 2.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 17 | 0.69 | 2.6 |
GTEx | Testis | 22 | 0.70 | 2.6 |
GTEx | Whole Blood | 12 | 0.60 | 2.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 7 | 0.66 | 2.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 3 | 0.59 | 2.6 |
GTEx | Esophagus Mucosa | 19 | 0.57 | 2.5 |
GTEx | Esophagus Muscularis | 22 | 0.68 | 2.5 |
GTEx | Muscle Skeletal | 17 | 0.59 | 2.5 |
GTEx | Skin Sun Exposed Lower leg | 19 | 0.52 | 2.5 |
GTEx | Thyroid | 29 | 0.73 | 2.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 7 | 0.53 | 2.5 |
GTEx | Cells Transformed fibroblasts | 27 | 0.64 | 2.4 |
GTEx | Nerve Tibial | 27 | 0.62 | 2.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 7 | 0.64 | 2.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 9 | 0.57 | 2.4 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 8 | 0.48 | 2.4 |
GTEx | Adipose Subcutaneous | 20 | 0.57 | 2.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 10 | 0.60 | 2.3 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 5 | 0.49 | 2.3 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.45 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 2.3 |
GTEx | Artery Tibial | 19 | 0.51 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 11 | 0.44 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 8 | 0.63 | 2.2 |
NTR | Blood | 9 | 0.37 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 20 | 0.46 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 13 | 0.44 | 2.1 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 8 | 0.48 | 2.1 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 24 | 0.52 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 29 | 0.54 | 2.0 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 17 | 0.39 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 9 | 0.44 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 21 | 0.51 | 2.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 13 | 0.48 | 1.9 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 4 | 0.20 | 1.9 |
The Cancer Genome Atlas | Thyroid Carcinoma | 24 | 0.47 | 1.9 |
METSIM | Adipose | 16 | 0.35 | 1.8 |
ROSMAP | Brain Pre-frontal Cortex | 6 | 0.14 | 1.7 |
YFS | Blood | 16 | 0.35 | 1.7 |