927 significantly associated models · 165 unique genes
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# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7715776 | 9571422 | 2 | 1 | 6.7e-08 | 1.8e-08 | 9.3e-08 | 10 | RERE |
2 | 1 | 20434402 | 22200998 | 1 | 1 | 2.9e-07 | 4.8e-07 | 5.8e-02 | 86 | EIF4G3 |
3 | 1 | 86635245 | 88077288 | 1 | 1 | 5.9e-08 | 6.1e-06 | 1.8e-05 | 10 | SEP15 |
4 | 1 | 171053153 | 172474017 | 1 | 1 | 8.2e-09 | 2.3e-07 | 1.8e-02 | 79 | METTL13 |
5 | 1 | 173437024 | 175663031 | 1 | 1 | 2.4e-07 | 1.7e-09 | 1.0e+00 | 100 | RABGAP1L |
6 | 1 | 201610247 | 202106797 | 1 | 1 | 3.0e-07 | 4.0e-08 | 3.1e-02 | 85 | SHISA4 |
7 | 2 | 23913985 | 24468132 | 1 | 1 | 3.1e-08 | 1.6e-05 | 3.5e-01 | 95 | UBXN2A |
8 | 2 | 60707588 | 62107632 | 1 | 1 | 1.4e-07 | 4.3e-06 | 7.9e-01 | 100 | AHSA2 |
9 | 2 | 86531748 | 87557137 | 1 | 1 | 2.1e-07 | 1.7e-07 | 1.9e-02 | 80 | PLGLB1 |
10 | 2 | 147993969 | 149475737 | 2 | 1 | 8.5e-14 | 3.8e-14 | 6.6e-03 | 87 | ORC4L |
11 | 3 | 16154636 | 17814553 | 1 | 1 | 5.4e-10 | 4.5e-11 | 1.9e-03 | 78 | PLCL2 |
12 | 3 | 35439546 | 36079910 | 1 | 1 | 4.3e-10 | 8.6e-12 | 3.1e-03 | 81 | ARPP21 |
13 | 3 | 43931484 | 45460914 | 2 | 1 | 1.4e-07 | 1.3e-05 | 9.0e-01 | 100 | MPRIPP1 |
14 | 3 | 49598064 | 51234774 | 6 | 1 | 4.4e-08 | 4.4e-08 | 1.0e+00 | 100 | HYAL1 |
15 | 3 | 51616334 | 53015839 | 1 | 1 | 4.9e-08 | 1.2e-06 | 9.8e-02 | 88 | WDR82 |
16 | 3 | 135273949 | 137261517 | 5 | 1 | 2.4e-12 | 7.4e-13 | 1.0e+00 | 100 | PCCB |
17 | 4 | 14777384 | 16291144 | 1 | 1 | 1.5e-08 | 1.3e-06 | 3.6e-01 | 96 | CC2D2A |
18 | 4 | 41746460 | 42336312 | 1 | 1 | 1.2e-07 | 6.4e-08 | 2.1e-01 | 95 | SLC30A9 |
19 | 4 | 89947254 | 91439574 | 1 | 1 | 1.4e-08 | 3.8e-09 | 1.0e+00 | 100 | SNCA |
20 | 4 | 118707160 | 119423789 | 1 | 1 | 2.9e-08 | 2.2e-06 | 1.1e-01 | 89 | NDST3 |
21 | 5 | 86867897 | 88677293 | 4 | 5 | 8.8e-12 | 3.6e-10 | 1.0e+00 | 100 | LINC00461 LOC645323 TMEM161B TMEM161B-AS1 |
22 | 5 | 106500969 | 108412472 | 1 | 1 | 6.7e-09 | 1.8e-10 | 4.3e-06 | 48 | FBXL17 |
23 | 6 | 100712304 | 101576316 | 1 | 1 | 2.0e-08 | 1.9e-09 | 1.3e-02 | 83 | ASCC3 |
24 | 6 | 126412953 | 127031550 | 1 | 1 | 7.0e-08 | 7.9e-08 | 1.0e+00 | 100 | CENPW |
25 | 7 | 1580921 | 2977732 | 1 | 1 | 1.1e-08 | 4.1e-08 | 8.7e-03 | 77 | FTSJ2 |
26 | 7 | 11553163 | 12967449 | 1 | 1 | 1.9e-08 | 1.3e-09 | 2.0e-02 | 85 | TMEM106B |
27 | 7 | 24040297 | 25508637 | 1 | 1 | 1.9e-07 | 4.1e-06 | 2.2e-01 | 93 | DFNA5 |
28 | 7 | 125383444 | 127590914 | 1 | 1 | 2.7e-07 | 4.3e-12 | 7.8e-07 | 49 | GRM8 |
29 | 7 | 136226517 | 137716835 | 1 | 1 | 6.7e-08 | 3.9e-08 | 1.0e+00 | 100 | PTN |
30 | 8 | 141421996 | 142253369 | 1 | 1 | 2.0e-07 | 1.5e-06 | 7.8e-01 | 100 | PTK2 |
31 | 9 | 95502571 | 96913764 | 2 | 1 | 1.2e-10 | 2.4e-10 | 1.0e+00 | 100 | RP11-165J3.6 |
32 | 9 | 97520168 | 98975128 | 1 | 1 | 8.1e-12 | 1.2e-13 | 4.0e-03 | 85 | PTCH1 |
33 | 9 | 119768572 | 121177842 | 1 | 1 | 2.5e-11 | 5.2e-13 | 2.0e-04 | 74 | TLR4 |
34 | 9 | 126321003 | 128824378 | 2 | 2 | 1.4e-07 | 2.1e-07 | 1.0e+00 | 100 | GAPVD1 NEK6 |
35 | 11 | 12611333 | 14105497 | 1 | 1 | 4.4e-13 | 1.3e-11 | 3.4e-01 | 98 | ARNTL |
36 | 11 | 31573646 | 32376894 | 2 | 1 | 3.8e-09 | 1.9e-10 | 2.2e-04 | 66 | PAX6 |
37 | 11 | 46010847 | 48559571 | 15 | 7 | 5.5e-16 | 1.7e-14 | NaN | NaN | ARHGAP1 C1QTNF4 LRP4 MADD NUP160 |
38 | 11 | 56666189 | 58178587 | 5 | 1 | 2.0e-11 | 1.0e-10 | 1.0e+00 | 100 | ZDHHC5 |
39 | 11 | 105180427 | 106591126 | 1 | 1 | 1.1e-07 | 2.0e-05 | 1.9e-01 | 91 | MSANTD4 |
40 | 11 | 112135760 | 113969669 | 5 | 7 | 3.5e-17 | 6.2e-17 | 1.0e+00 | 100 | ANKK1 DRD2 NCAM1 TTC12 |
41 | 11 | 133079948 | 134525648 | 1 | 1 | 2.2e-08 | 4.4e-07 | 2.5e-02 | 80 | IGSF9B |
42 | 12 | 108763672 | 110729807 | 6 | 1 | 2.5e-15 | 5.0e-16 | 3.0e-02 | 93 | MMAB |
43 | 12 | 118116461 | 119551378 | 2 | 1 | 9.9e-10 | 1.0e-09 | 1.8e-01 | 95 | TAOK3 |
44 | 13 | 31078511 | 32595740 | 1 | 1 | 1.7e-07 | 3.0e-06 | 2.1e-02 | 76 | B3GALTL |
45 | 13 | 66643767 | 68053176 | 1 | 1 | 2.0e-08 | 4.9e-09 | 6.5e-07 | 28 | PCDH9 |
46 | 13 | 110849169 | 112251122 | 1 | 1 | 2.6e-07 | 1.6e-06 | 7.8e-01 | 100 | ANKRD10-IT1 |
47 | 14 | 74424938 | 76226003 | 6 | 2 | 1.1e-13 | 2.1e-13 | 4.0e-01 | 99 | AREL1 DLST |
48 | 15 | 77207277 | 78806023 | 1 | 1 | 2.9e-08 | 3.7e-11 | 1.2e-05 | 56 | LINGO1 |
49 | 16 | 30347731 | 31860399 | 12 | 1 | 3.3e-11 | 8.9e-11 | 1.7e-01 | 95 | RP11-196G11.2 |
50 | 16 | 71093625 | 71570413 | 1 | 1 | 8.6e-08 | 3.4e-08 | 1.4e-01 | 93 | FTSJD1 |
51 | 16 | 86667409 | 88119671 | 1 | 1 | 3.9e-08 | 2.1e-08 | 8.1e-02 | 90 | FBXO31 |
52 | 17 | 1805677 | 3287175 | 1 | 1 | 7.6e-08 | 2.2e-11 | 3.8e-06 | 52 | PAFAH1B1 |
53 | 17 | 17017584 | 18914778 | 3 | 1 | 2.6e-08 | 3.1e-07 | 3.4e-03 | 67 | SREBF1 |
54 | 17 | 37516722 | 38943319 | 2 | 1 | 6.1e-09 | 1.5e-08 | 2.1e-01 | 95 | MED24 |
55 | 17 | 42607368 | 45796313 | 21 | 1 | 2.3e-29 | 1.0e-29 | 5.4e-03 | 94 | WNT3 |
56 | 17 | 78763580 | 79380547 | 2 | 1 | 1.1e-12 | 2.8e-12 | 9.6e-02 | 94 | AATK |
57 | 18 | 30921425 | 31568499 | 1 | 1 | 5.2e-10 | 1.1e-09 | 2.5e-01 | 96 | ASXL3 |
58 | 18 | 34124783 | 35844220 | 1 | 2 | 1.2e-09 | 1.9e-20 | 6.2e-08 | 66 | CELF4 |
59 | 18 | 52209411 | 54028036 | 1 | 1 | 2.2e-07 | 8.1e-10 | 1.0e-08 | 13 | TCF4 |
60 | 19 | 32209988 | 33668090 | 2 | 1 | 1.6e-08 | 3.5e-08 | 3.3e-01 | 97 | ZNF507 |
61 | 20 | 2429222 | 3839754 | 1 | 1 | 6.1e-08 | 1.1e-05 | 2.5e-01 | 93 | FASTKD5 |
62 | 20 | 32594714 | 34109427 | 2 | 1 | 2.0e-08 | 7.3e-08 | 1.0e+00 | 100 | NCOA6 |
63 | 20 | 43958786 | 45456440 | 2 | 2 | 1.1e-10 | 6.4e-11 | 1.0e+00 | 100 | CD40 SLC12A5 |
64 | 22 | 40472399 | 42892596 | 13 | 1 | 7.2e-13 | 5.2e-14 | 1.6e-02 | 90 | SLC25A17 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 9 | 1.59 | 3.3 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.08 | 3.2 |
GTEx | Brain Hippocampus | 7 | 1.34 | 3.1 |
GTEx | Brain Cortex | 14 | 1.35 | 3.0 |
GTEx | Ovary | 11 | 1.21 | 3.0 |
GTEx | Artery Coronary | 15 | 1.27 | 2.9 |
GTEx | Brain Frontal Cortex BA9 | 10 | 1.08 | 2.9 |
GTEx | Vagina | 5 | 0.79 | 2.9 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.8 |
GTEx | Brain Nucleus accumbens basal ganglia | 10 | 1.15 | 2.8 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 2.8 |
GTEx | Cells EBV-transformed lymphocytes | 13 | 0.91 | 2.8 |
GTEx | Esophagus Gastroesophageal Junction | 16 | 1.11 | 2.8 |
GTEx | Liver | 9 | 1.26 | 2.8 |
GTEx | Brain Caudate basal ganglia | 9 | 0.98 | 2.7 |
GTEx | Prostate | 6 | 0.72 | 2.7 |
GTEx | Spleen | 12 | 0.85 | 2.7 |
GTEx | Stomach | 14 | 0.96 | 2.7 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.88 | 2.7 |
GTEx | Brain Cerebellar Hemisphere | 12 | 0.81 | 2.6 |
GTEx | Breast Mammary Tissue (Female) | 14 | 0.85 | 2.6 |
GTEx | Colon Sigmoid | 14 | 0.96 | 2.6 |
GTEx | Colon Transverse | 19 | 0.92 | 2.6 |
GTEx | Esophagus Muscularis | 24 | 0.74 | 2.6 |
GTEx | Heart Atrial Appendage | 14 | 0.89 | 2.6 |
GTEx | Heart Left Ventricle | 13 | 0.85 | 2.6 |
GTEx | Pancreas | 13 | 0.80 | 2.6 |
GTEx | Pituitary | 12 | 1.08 | 2.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 18 | 0.73 | 2.6 |
GTEx | Testis | 25 | 0.79 | 2.6 |
GTEx | Adipose Visceral Omentum | 14 | 0.69 | 2.5 |
GTEx | Adrenal Gland | 10 | 0.69 | 2.5 |
GTEx | Artery Aorta | 18 | 0.60 | 2.5 |
GTEx | Brain Cerebellum | 13 | 0.66 | 2.5 |
GTEx | Breast Mammary Tissue | 18 | 0.91 | 2.5 |
GTEx | Breast Mammary Tissue (Male) | 10 | 0.84 | 2.5 |
GTEx | Skin Sun Exposed Lower leg | 23 | 0.63 | 2.5 |
GTEx | Esophagus Mucosa | 24 | 0.72 | 2.4 |
GTEx | Lung | 13 | 0.45 | 2.4 |
GTEx | Muscle Skeletal | 18 | 0.62 | 2.4 |
GTEx | Thyroid | 23 | 0.58 | 2.4 |
GTEx | Whole Blood | 12 | 0.60 | 2.4 |
GTEx | Artery Tibial | 14 | 0.37 | 2.3 |
GTEx | Cells Transformed fibroblasts | 21 | 0.50 | 2.3 |
GTEx | Nerve Tibial | 19 | 0.44 | 2.3 |
ROSMAP | Brain Pre-frontal Cortex | 19 | 0.43 | 2.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 12 | 0.73 | 2.3 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 6 | 0.59 | 2.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 14 | 0.56 | 2.3 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 11 | 0.69 | 2.3 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 6 | 0.36 | 2.3 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 6 | 0.56 | 2.3 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 10 | 0.60 | 2.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 2.3 |
GTEx | Adipose Subcutaneous | 15 | 0.43 | 2.2 |
NTR | Blood | 7 | 0.29 | 2.2 |
CommonMind | Brain Pre-frontal Cortex | 14 | 0.26 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 6 | 0.55 | 2.2 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 7 | 0.34 | 2.2 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 16 | 0.59 | 2.2 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 14 | 0.68 | 2.2 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.45 | 2.2 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 13 | 0.44 | 2.2 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 6 | 0.45 | 2.2 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.43 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 4 | 0.31 | 2.2 |
METSIM | Adipose | 15 | 0.33 | 2.1 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 15 | 0.34 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 15 | 0.37 | 2.1 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 21 | 0.45 | 2.1 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.38 | 2.1 |
The Cancer Genome Atlas | Thyroid Carcinoma | 22 | 0.43 | 2.1 |
YFS | Blood | 17 | 0.37 | 2.0 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 14 | 0.33 | 2.0 |