485 significantly associated models · 67 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 149672809 | 151227371 | 6 | 1 | 1.4e-11 | 6.9e-11 | 5.1e-01 | 99 | ECM1 |
2 | 1 | 155739430 | 157168420 | 1 | 1 | 2.7e-10 | 4.5e-16 | 3.9e-08 | 54 | MEF2D |
3 | 1 | 242590540 | 244359621 | 3 | 1 | 2.8e-09 | 1.8e-08 | 1.0e-01 | 92 | CEP170 |
4 | 3 | 157594704 | 159140638 | 3 | 1 | 6.9e-08 | 6.9e-08 | 1.0e+00 | 100 | RARRES1 |
5 | 4 | 87165758 | 88754060 | 1 | 1 | 1.7e-07 | 2.3e-08 | 1.9e-02 | 82 | AFF1 |
6 | 6 | 12020241 | 13990267 | 2 | 1 | 2.4e-15 | 7.2e-16 | 7.8e-04 | 83 | PHACTR1 |
7 | 6 | 25285943 | 26689223 | 1 | 1 | 8.6e-08 | 6.9e-10 | 4.8e-06 | 45 | U91328.21 |
8 | 6 | 95831017 | 97756290 | 4 | 2 | 2.5e-26 | 1.8e-31 | 7.2e-04 | 92 | FHL5 KIAA0776 |
9 | 8 | 8747245 | 9255927 | 1 | 1 | 6.7e-08 | 7.7e-08 | 2.7e-02 | 83 | PPP1R3B |
10 | 9 | 70961350 | 72562779 | 2 | 1 | 5.7e-08 | 2.5e-09 | 8.9e-03 | 81 | TJP2 |
11 | 10 | 99973800 | 101244527 | 1 | 1 | 3.1e-08 | 9.0e-09 | 1.0e+00 | 100 | HPSE2 |
12 | 11 | 56774260 | 58178587 | 1 | 1 | 6.5e-08 | 2.1e-06 | 9.6e-03 | 70 | MED19 |
13 | 12 | 55677395 | 58303535 | 8 | 2 | 1.6e-40 | 1.6e-40 | 1.0e+00 | 100 | LRP1 RAB5B |
14 | 12 | 109739011 | 111873167 | 9 | 2 | 2.4e-10 | 2.5e-10 | 1.0e+00 | 100 | ANKRD13A FAM216A |
15 | 12 | 111910219 | 113517494 | 1 | 1 | 2.8e-07 | 5.0e-07 | 3.5e-01 | 97 | HECTD4 |
16 | 16 | 74578110 | 76197034 | 2 | 1 | 4.5e-08 | 3.7e-08 | 1.4e-01 | 93 | TMEM170A |
17 | 17 | 42607368 | 45796313 | 21 | 8 | 2.4e-18 | 1.7e-16 | 1.0e+00 | 100 | ACBD4 ARL17B CRHR1-IT1 KANSL1 LRRC37A MAPT RP11-669E14.6 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Hippocampus | 6 | 1.145 | 2.3 |
GTEx | Uterus | 6 | 1.058 | 2.3 |
GTEx | Artery Coronary | 10 | 0.845 | 2.2 |
GTEx | Cells EBV-transformed lymphocytes | 9 | 0.632 | 2.1 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.868 | 2.1 |
GTEx | Artery Tibial | 19 | 0.505 | 2.0 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.541 | 2.0 |
GTEx | Breast Mammary Tissue (Male) | 7 | 0.587 | 2.0 |
GTEx | Ovary | 6 | 0.661 | 2.0 |
GTEx | Vagina | 5 | 0.787 | 2.0 |
GTEx | Adrenal Gland | 7 | 0.480 | 1.9 |
GTEx | Artery Aorta | 13 | 0.437 | 1.9 |
GTEx | Brain Cerebellar Hemisphere | 8 | 0.537 | 1.9 |
GTEx | Brain Cortex | 6 | 0.580 | 1.9 |
GTEx | Brain Hypothalamus | 4 | 0.678 | 1.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 6 | 0.694 | 1.9 |
GTEx | Brain Putamen basal ganglia | 5 | 0.801 | 1.9 |
GTEx | Colon Sigmoid | 7 | 0.479 | 1.9 |
GTEx | Colon Transverse | 9 | 0.436 | 1.9 |
GTEx | Esophagus Gastroesophageal Junction | 8 | 0.554 | 1.9 |
GTEx | Pancreas | 9 | 0.551 | 1.9 |
GTEx | Prostate | 6 | 0.719 | 1.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 11 | 0.447 | 1.9 |
GTEx | Spleen | 5 | 0.354 | 1.9 |
GTEx | Stomach | 7 | 0.481 | 1.9 |
GTEx | Adipose Subcutaneous | 11 | 0.315 | 1.8 |
GTEx | Adipose Visceral Omentum | 9 | 0.442 | 1.8 |
GTEx | Brain Caudate basal ganglia | 5 | 0.543 | 1.8 |
GTEx | Brain Cerebellum | 6 | 0.303 | 1.8 |
GTEx | Breast Mammary Tissue | 8 | 0.405 | 1.8 |
GTEx | Breast Mammary Tissue (Female) | 9 | 0.547 | 1.8 |
GTEx | Cells Transformed fibroblasts | 14 | 0.333 | 1.8 |
GTEx | Esophagus Mucosa | 14 | 0.422 | 1.8 |
GTEx | Esophagus Muscularis | 13 | 0.402 | 1.8 |
GTEx | Heart Atrial Appendage | 7 | 0.443 | 1.8 |
GTEx | Liver | 4 | 0.558 | 1.8 |
GTEx | Lung | 9 | 0.313 | 1.8 |
GTEx | Muscle Skeletal | 10 | 0.346 | 1.8 |
GTEx | Nerve Tibial | 12 | 0.278 | 1.8 |
GTEx | Pituitary | 5 | 0.448 | 1.8 |
GTEx | Skin Sun Exposed Lower leg | 10 | 0.275 | 1.8 |
GTEx | Testis | 11 | 0.349 | 1.8 |
GTEx | Thyroid | 12 | 0.300 | 1.8 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.438 | 1.8 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.281 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.394 | 1.8 |
GTEx | Heart Left Ventricle | 8 | 0.523 | 1.7 |
GTEx | Whole Blood | 7 | 0.351 | 1.7 |
NTR | Blood | 7 | 0.291 | 1.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.273 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 5 | 0.170 | 1.7 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 4 | 0.301 | 1.7 |
METSIM | Adipose | 5 | 0.108 | 1.6 |
CommonMind | Brain Pre-frontal Cortex | 8 | 0.149 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 3 | 0.181 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 4 | 0.091 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.391 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 4 | 0.147 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 5 | 0.122 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 3 | 0.146 | 1.6 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 5 | 0.200 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 4 | 0.251 | 1.6 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.181 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 8 | 0.173 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.434 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 7 | 0.136 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 2 | 0.046 | 1.5 |
YFS | Blood | 4 | 0.087 | 1.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 6 | 0.139 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.181 | 1.5 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.5 |