52 significantly associated models · 30 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 207107801 | 208531683 | 1 | 1 | 1.6e-08 | 3.1e-08 | 0.183 | 94 | CPO |
2 | 3 | 48702606 | 50636111 | 7 | 1 | 1.5e-08 | 3.2e-07 | 0.013 | 76 | GPX1 |
3 | 5 | 169590807 | 171419658 | 2 | 2 | 1.0e-07 | 1.5e-06 | 0.285 | 95 | GABRP RANBP17 |
4 | 6 | 96314776 | 97756290 | 1 | 1 | 1.6e-07 | 4.2e-08 | 0.028 | 84 | FHL5 |
5 | 7 | 511203 | 1607259 | 2 | 1 | 1.3e-07 | 2.8e-06 | 0.300 | 95 | SUN1 |
6 | 9 | 127218258 | 128680148 | 2 | 1 | 1.8e-10 | 1.5e-08 | 0.537 | 99 | PPP6C |
7 | 12 | 55694116 | 58303535 | 2 | 2 | 3.8e-10 | 8.0e-10 | 1.000 | 100 | LRP1 SUOX |
8 | 14 | 54820582 | 56233069 | 1 | 1 | 4.8e-09 | 1.6e-05 | 0.134 | 88 | MAPK1IP1L |
9 | 16 | 71070698 | 72838680 | 5 | 1 | 8.6e-09 | 3.3e-09 | 0.033 | 87 | ATXN1L |
10 | 20 | 30179027 | 31870640 | 3 | 1 | 1.9e-08 | 1.3e-07 | 0.107 | 91 | KIF3B |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.9 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 1.9 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.070 | 1.9 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.9 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.9 |
GTEx | Uterus | 0 | 0.000 | 1.9 |
GTEx | Adrenal Gland | 3 | 0.206 | 1.8 |
GTEx | Artery Coronary | 0 | 0.000 | 1.8 |
GTEx | Brain Cerebellum | 2 | 0.101 | 1.8 |
GTEx | Colon Transverse | 0 | 0.000 | 1.8 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.8 |
GTEx | Liver | 0 | 0.000 | 1.8 |
GTEx | Muscle Skeletal | 0 | 0.000 | 1.8 |
GTEx | Ovary | 0 | 0.000 | 1.8 |
GTEx | Prostate | 1 | 0.120 | 1.8 |
GTEx | Skin Not Sun Exposed Suprapubic | 2 | 0.081 | 1.8 |
GTEx | Skin Sun Exposed Lower leg | 3 | 0.082 | 1.8 |
GTEx | Spleen | 1 | 0.071 | 1.8 |
GTEx | Stomach | 0 | 0.000 | 1.8 |
GTEx | Testis | 0 | 0.000 | 1.8 |
GTEx | Thyroid | 1 | 0.025 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.8 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.7 |
GTEx | Adipose Visceral Omentum | 0 | 0.000 | 1.7 |
GTEx | Artery Aorta | 0 | 0.000 | 1.7 |
GTEx | Artery Tibial | 3 | 0.080 | 1.7 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Brain Cortex | 0 | 0.000 | 1.7 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.7 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.7 |
GTEx | Cells Transformed fibroblasts | 1 | 0.024 | 1.7 |
GTEx | Esophagus Mucosa | 1 | 0.030 | 1.7 |
GTEx | Esophagus Muscularis | 1 | 0.031 | 1.7 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.7 |
GTEx | Heart Left Ventricle | 1 | 0.065 | 1.7 |
GTEx | Lung | 1 | 0.035 | 1.7 |
GTEx | Nerve Tibial | 1 | 0.023 | 1.7 |
GTEx | Pancreas | 0 | 0.000 | 1.7 |
GTEx | Pituitary | 0 | 0.000 | 1.7 |
GTEx | Vagina | 0 | 0.000 | 1.7 |
GTEx | Whole Blood | 0 | 0.000 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 5 | 0.093 | 1.7 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.7 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 1 | 0.037 | 1.7 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 1 | 0.075 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.7 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.6 |
METSIM | Adipose | 4 | 0.087 | 1.6 |
NTR | Blood | 1 | 0.042 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 3 | 0.068 | 1.6 |
YFS | Blood | 2 | 0.043 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 2 | 0.045 | 1.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 1 | 0.049 | 1.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.023 | 1.6 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 1 | 0.034 | 1.6 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 3 | 0.058 | 1.6 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.5 |