131 significantly associated models · 49 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 61510619 | 63844736 | 4 | 1 | 8.3e-12 | 2.4e-12 | 1.0e+00 | 100 | DOCK7 |
2 | 1 | 108854166 | 110742615 | 8 | 1 | 9.1e-36 | 7.0e-36 | 1.0e+00 | 100 | PSRC1 |
3 | 2 | 20529948 | 21958745 | 1 | 1 | 8.6e-25 | 2.0e-25 | 1.0e+00 | 100 | APOB |
4 | 2 | 27467598 | 27949052 | 1 | 1 | 1.7e-09 | 1.2e-09 | 1.0e+00 | 100 | FNDC4 |
5 | 2 | 43791363 | 44450524 | 2 | 2 | 6.1e-08 | 9.5e-18 | 1.3e-09 | 50 | ABCG5 LRPPRC |
6 | 5 | 73969058 | 75504243 | 2 | 1 | 1.6e-10 | 1.3e-10 | 1.0e-01 | 94 | HMGCR |
7 | 8 | 18003897 | 18505600 | 1 | 1 | 1.4e-09 | 7.4e-11 | 1.5e-02 | 86 | NAT2 |
8 | 8 | 19547307 | 20071503 | 1 | 1 | 5.4e-08 | 6.2e-09 | 2.2e-03 | 72 | LPL |
9 | 9 | 135883620 | 136399075 | 1 | 1 | 3.7e-08 | 9.6e-09 | 3.1e-03 | 73 | ABO |
10 | 11 | 8725268 | 10159883 | 1 | 1 | 6.1e-08 | 2.0e-04 | 9.7e-03 | 52 | IPO7 |
11 | 11 | 115953897 | 117745003 | 2 | 2 | 7.3e-15 | 7.8e-16 | 3.1e-01 | 98 | PAFAH1B2 ZNF259 |
12 | 15 | 90730363 | 92135418 | 1 | 1 | 3.4e-08 | 7.2e-08 | 1.0e+00 | 100 | FES |
13 | 16 | 56749994 | 57261146 | 1 | 1 | 8.9e-08 | 8.9e-08 | 1.0e+00 | 100 | CETP |
14 | 16 | 71403083 | 72845749 | 4 | 1 | 2.2e-08 | 8.1e-08 | 1.0e+00 | 100 | TXNL4B |
15 | 19 | 10283932 | 12191233 | 7 | 3 | 3.3e-13 | 7.0e-38 | 5.3e-12 | 71 | C19orf80 EPOR LDLR |
16 | 19 | 44614208 | 46098885 | 4 | 5 | 9.6e-13 | 5.0e-70 | 3.1e-44 | 38 | APOC2 BCAM PVRL2 TOMM40 |
17 | 19 | 48464978 | 49872085 | 3 | 1 | 1.7e-08 | 1.1e-08 | 1.3e-01 | 93 | NTN5 |
18 | 20 | 39720830 | 40229720 | 1 | 1 | 3.8e-08 | 1.2e-06 | 1.6e-01 | 92 | LPIN3 |
19 | 20 | 61989111 | 62912463 | 3 | 1 | 8.2e-09 | 2.4e-08 | 6.7e-01 | 99 | OPRL1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.271 | 1.8 |
GTEx | Liver | 2 | 0.279 | 1.7 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.197 | 1.7 |
GTEx | Stomach | 2 | 0.138 | 1.6 |
GTEx | Vagina | 1 | 0.157 | 1.6 |
GTEx | Whole Blood | 4 | 0.201 | 1.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 1 | 0.091 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 5 | 0.242 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 6 | 0.146 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 2 | 0.126 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 4 | 0.238 | 1.6 |
GTEx | Adipose Visceral Omentum | 1 | 0.049 | 1.5 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.5 |
GTEx | Artery Aorta | 3 | 0.101 | 1.5 |
GTEx | Artery Coronary | 0 | 0.000 | 1.5 |
GTEx | Artery Tibial | 3 | 0.080 | 1.5 |
GTEx | Brain Cerebellum | 1 | 0.050 | 1.5 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.5 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.5 |
GTEx | Cells Transformed fibroblasts | 5 | 0.119 | 1.5 |
GTEx | Esophagus Mucosa | 7 | 0.211 | 1.5 |
GTEx | Esophagus Muscularis | 3 | 0.093 | 1.5 |
GTEx | Lung | 0 | 0.000 | 1.5 |
GTEx | Muscle Skeletal | 2 | 0.069 | 1.5 |
GTEx | Ovary | 0 | 0.000 | 1.5 |
GTEx | Prostate | 0 | 0.000 | 1.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 2 | 0.081 | 1.5 |
GTEx | Skin Sun Exposed Lower leg | 4 | 0.110 | 1.5 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.5 |
GTEx | Testis | 0 | 0.000 | 1.5 |
GTEx | Thyroid | 1 | 0.025 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 5 | 0.114 | 1.5 |
YFS | Blood | 5 | 0.108 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 6 | 0.112 | 1.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 4 | 0.091 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 5 | 0.244 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 2 | 0.068 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 4 | 0.241 | 1.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 1 | 0.094 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 5 | 0.097 | 1.5 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.4 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Brain Cerebellar Hemisphere | 1 | 0.067 | 1.4 |
GTEx | Brain Cortex | 0 | 0.000 | 1.4 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.4 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.4 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.4 |
GTEx | Colon Transverse | 0 | 0.000 | 1.4 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.4 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.4 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.4 |
GTEx | Nerve Tibial | 2 | 0.046 | 1.4 |
GTEx | Pancreas | 2 | 0.123 | 1.4 |
GTEx | Pituitary | 0 | 0.000 | 1.4 |
GTEx | Spleen | 1 | 0.071 | 1.4 |
METSIM | Adipose | 2 | 0.043 | 1.4 |
NTR | Blood | 2 | 0.083 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 2 | 0.073 | 1.4 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 6 | 0.139 | 1.4 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 3 | 0.120 | 1.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 6 | 0.130 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.4 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.3 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.3 |
GTEx | Uterus | 0 | 0.000 | 1.3 |