9 significantly associated models · 7 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3 | 47681881 | 49016056 | 1 | 1 | 2.4e-07 | 6.7e-06 | 0.958 | 100 | FCF1P2 |
2 | 4 | 2389800 | 3943984 | 1 | 1 | 5.7e-08 | 2.6e-06 | 0.024 | 77 | HTT |
3 | 15 | 91181489 | 91686147 | 1 | 1 | 2.0e-07 | 5.2e-07 | 1.000 | 100 | FES |
4 | 16 | 86671 | 1032776 | 1 | 1 | 2.9e-07 | 6.1e-06 | 0.749 | 100 | PDIA2 |
5 | 16 | 30347731 | 31833122 | 2 | 1 | 5.7e-08 | 5.5e-08 | 1.000 | 100 | KAT8 |
6 | 16 | 53226098 | 53759123 | 1 | 1 | 2.2e-07 | 1.2e-05 | 0.189 | 91 | RBL2 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cortex | 1 | 0.097 | 1.6 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.6 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.6 |
GTEx | Ovary | 0 | 0.000 | 1.6 |
GTEx | Prostate | 0 | 0.000 | 1.6 |
GTEx | Stomach | 0 | 0.000 | 1.6 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.5 |
GTEx | Adipose Visceral Omentum | 1 | 0.049 | 1.5 |
GTEx | Artery Aorta | 0 | 0.000 | 1.5 |
GTEx | Artery Coronary | 0 | 0.000 | 1.5 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.5 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.5 |
GTEx | Colon Transverse | 0 | 0.000 | 1.5 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.5 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.5 |
GTEx | Muscle Skeletal | 0 | 0.000 | 1.5 |
GTEx | Pancreas | 0 | 0.000 | 1.5 |
GTEx | Pituitary | 0 | 0.000 | 1.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 0 | 0.000 | 1.5 |
GTEx | Skin Sun Exposed Lower leg | 0 | 0.000 | 1.5 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.5 |
GTEx | Thyroid | 0 | 0.000 | 1.5 |
GTEx | Uterus | 0 | 0.000 | 1.5 |
GTEx | Whole Blood | 2 | 0.100 | 1.5 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.4 |
GTEx | Artery Tibial | 0 | 0.000 | 1.4 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.4 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.4 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.4 |
GTEx | Cells Transformed fibroblasts | 0 | 0.000 | 1.4 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.4 |
GTEx | Esophagus Mucosa | 0 | 0.000 | 1.4 |
GTEx | Esophagus Muscularis | 0 | 0.000 | 1.4 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.4 |
GTEx | Liver | 0 | 0.000 | 1.4 |
GTEx | Lung | 0 | 0.000 | 1.4 |
GTEx | Nerve Tibial | 0 | 0.000 | 1.4 |
GTEx | Spleen | 0 | 0.000 | 1.4 |
GTEx | Testis | 0 | 0.000 | 1.4 |
METSIM | Adipose | 0 | 0.000 | 1.4 |
ROSMAP | Brain Pre-frontal Cortex | 1 | 0.023 | 1.4 |
YFS | Blood | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 1 | 0.060 | 1.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Thyroid Carcinoma | 0 | 0.000 | 1.4 |
GTEx | Vagina | 0 | 0.000 | 1.3 |
NTR | Blood | 0 | 0.000 | 1.3 |
CommonMind | Brain Pre-frontal Cortex | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 1 | 0.023 | 1.3 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 1 | 0.022 | 1.3 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.2 |