269 significantly associated models · 40 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 149771890 | 151174772 | 1 | 1 | 2.7e-07 | 2.5e-07 | 1.0000 | 100 | TARS2 |
2 | 1 | 155739430 | 157168420 | 1 | 1 | 3.6e-10 | 6.4e-12 | 0.0044 | 83 | MEF2D |
3 | 1 | 173103273 | 175689679 | 4 | 1 | 9.1e-09 | 1.1e-09 | 1.0000 | 100 | RABGAP1L |
4 | 1 | 242590540 | 244359621 | 2 | 1 | 4.5e-08 | 3.1e-08 | 1.0000 | 100 | SDCCAG8 |
5 | 2 | 26624843 | 28503968 | 5 | 2 | 4.0e-08 | 2.0e-07 | 0.8840 | 100 | CGREF1 NRBP1 |
6 | 2 | 207244783 | 208729540 | 1 | 1 | 1.8e-07 | 1.3e-08 | 0.0122 | 80 | KLF7 |
7 | 6 | 25285943 | 26689223 | 1 | 1 | 1.2e-13 | 4.7e-11 | 0.0112 | 85 | U91328.21 |
8 | 6 | 34065982 | 35751895 | 2 | 2 | 1.2e-08 | 8.9e-09 | 0.2700 | 96 | ANKS1A UHRF1BP1 |
9 | 6 | 96275538 | 97756290 | 3 | 1 | 4.1e-09 | 5.9e-10 | 0.0051 | 80 | FHL5 |
10 | 12 | 56776586 | 58303535 | 4 | 3 | 2.1e-18 | 6.0e-18 | 1.0000 | 100 | LRP1 TMEM194A |
11 | 12 | 123502044 | 124005129 | 1 | 1 | 1.7e-07 | 1.0e-06 | 0.9200 | 100 | CDK2AP1 |
12 | 15 | 80743350 | 81292020 | 1 | 1 | 4.8e-09 | 6.0e-09 | 1.0000 | 100 | FAM108C1 |
13 | 17 | 42774693 | 43913030 | 9 | 1 | 1.6e-10 | 2.5e-09 | 0.2220 | 96 | LRRC37A4P |
14 | 17 | 44788310 | 45285474 | 2 | 1 | 1.4e-07 | 3.7e-07 | 1.0000 | 100 | LRRC37A2 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Small Intestine Terminal Ileum | 3 | 0.651 | 2.1 |
GTEx | Uterus | 6 | 1.058 | 2.0 |
GTEx | Adipose Visceral Omentum | 5 | 0.246 | 1.9 |
GTEx | Artery Coronary | 5 | 0.423 | 1.9 |
GTEx | Artery Tibial | 10 | 0.266 | 1.9 |
GTEx | Brain Cerebellum | 5 | 0.252 | 1.9 |
GTEx | Brain Cortex | 4 | 0.386 | 1.9 |
GTEx | Brain Nucleus accumbens basal ganglia | 4 | 0.462 | 1.9 |
GTEx | Brain Putamen basal ganglia | 4 | 0.641 | 1.9 |
GTEx | Cells EBV-transformed lymphocytes | 5 | 0.351 | 1.9 |
GTEx | Colon Transverse | 5 | 0.242 | 1.9 |
GTEx | Liver | 2 | 0.279 | 1.9 |
GTEx | Pancreas | 5 | 0.306 | 1.9 |
GTEx | Prostate | 3 | 0.359 | 1.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 5 | 0.203 | 1.9 |
GTEx | Stomach | 6 | 0.413 | 1.9 |
GTEx | Vagina | 4 | 0.630 | 1.9 |
GTEx | Adipose Subcutaneous | 6 | 0.172 | 1.8 |
GTEx | Adrenal Gland | 2 | 0.137 | 1.8 |
GTEx | Artery Aorta | 6 | 0.202 | 1.8 |
GTEx | Brain Cerebellar Hemisphere | 4 | 0.269 | 1.8 |
GTEx | Brain Frontal Cortex BA9 | 4 | 0.433 | 1.8 |
GTEx | Brain Hippocampus | 3 | 0.573 | 1.8 |
GTEx | Breast Mammary Tissue | 6 | 0.304 | 1.8 |
GTEx | Breast Mammary Tissue (Male) | 6 | 0.503 | 1.8 |
GTEx | Breast Mammary Tissue (Female) | 6 | 0.365 | 1.8 |
GTEx | Cells Transformed fibroblasts | 6 | 0.143 | 1.8 |
GTEx | Colon Sigmoid | 6 | 0.410 | 1.8 |
GTEx | Esophagus Gastroesophageal Junction | 6 | 0.415 | 1.8 |
GTEx | Esophagus Mucosa | 8 | 0.241 | 1.8 |
GTEx | Esophagus Muscularis | 9 | 0.278 | 1.8 |
GTEx | Heart Left Ventricle | 5 | 0.327 | 1.8 |
GTEx | Lung | 9 | 0.313 | 1.8 |
GTEx | Muscle Skeletal | 6 | 0.208 | 1.8 |
GTEx | Ovary | 4 | 0.441 | 1.8 |
GTEx | Pituitary | 3 | 0.269 | 1.8 |
GTEx | Skin Sun Exposed Lower leg | 10 | 0.275 | 1.8 |
GTEx | Spleen | 2 | 0.142 | 1.8 |
GTEx | Testis | 7 | 0.222 | 1.8 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.8 |
GTEx | Brain Caudate basal ganglia | 4 | 0.435 | 1.7 |
GTEx | Brain Hypothalamus | 3 | 0.508 | 1.7 |
GTEx | Heart Atrial Appendage | 5 | 0.317 | 1.7 |
GTEx | Nerve Tibial | 8 | 0.185 | 1.7 |
GTEx | Thyroid | 7 | 0.175 | 1.7 |
GTEx | Whole Blood | 5 | 0.251 | 1.7 |
CommonMind | Brain Pre-frontal Cortex | 4 | 0.074 | 1.7 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.060 | 1.7 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 1 | 0.037 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 1 | 0.090 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 3 | 0.102 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.181 | 1.7 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.7 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.7 |
METSIM | Adipose | 3 | 0.065 | 1.6 |
NTR | Blood | 4 | 0.167 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 1 | 0.023 | 1.6 |
YFS | Blood | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 2 | 0.049 | 1.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 1 | 0.022 | 1.6 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 4 | 0.078 | 1.6 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 1 | 0.049 | 1.5 |