401 significantly associated models · 36 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 173103273 | 175238653 | 3 | 1 | 3.5e-08 | 3.2e-10 | 1.000 | 100 | RABGAP1L |
2 | 1 | 242723236 | 244345666 | 2 | 1 | 5.1e-08 | 1.3e-07 | 0.118 | 91 | SDCCAG8 |
3 | 3 | 48618666 | 50448632 | 9 | 1 | 1.6e-08 | 4.0e-07 | 0.955 | 100 | USP4 |
4 | 6 | 96275538 | 97699026 | 1 | 1 | 1.2e-07 | 1.4e-08 | 0.036 | 86 | KIAA0776 |
5 | 12 | 56838745 | 58303535 | 1 | 1 | 9.1e-15 | 1.1e-14 | 1.000 | 100 | LRP1 |
6 | 17 | 42774693 | 45796313 | 19 | 1 | 2.8e-14 | 3.1e-14 | 1.000 | 100 | CRHR1-IT1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Artery Coronary | 9 | 0.761 | 2.0 |
GTEx | Uterus | 6 | 1.058 | 2.0 |
GTEx | Brain Hippocampus | 4 | 0.763 | 1.9 |
GTEx | Brain Putamen basal ganglia | 6 | 0.962 | 1.9 |
GTEx | Ovary | 6 | 0.661 | 1.9 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.868 | 1.9 |
GTEx | Vagina | 5 | 0.787 | 1.9 |
GTEx | Brain Hypothalamus | 4 | 0.678 | 1.8 |
GTEx | Colon Sigmoid | 7 | 0.479 | 1.8 |
GTEx | Prostate | 4 | 0.479 | 1.8 |
GTEx | Stomach | 8 | 0.550 | 1.8 |
GTEx | Adipose Visceral Omentum | 6 | 0.295 | 1.7 |
GTEx | Artery Aorta | 9 | 0.302 | 1.7 |
GTEx | Brain Cerebellum | 7 | 0.353 | 1.7 |
GTEx | Brain Cortex | 6 | 0.580 | 1.7 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.541 | 1.7 |
GTEx | Brain Nucleus accumbens basal ganglia | 6 | 0.694 | 1.7 |
GTEx | Breast Mammary Tissue | 7 | 0.355 | 1.7 |
GTEx | Breast Mammary Tissue (Male) | 7 | 0.587 | 1.7 |
GTEx | Breast Mammary Tissue (Female) | 7 | 0.426 | 1.7 |
GTEx | Cells EBV-transformed lymphocytes | 9 | 0.632 | 1.7 |
GTEx | Colon Transverse | 8 | 0.388 | 1.7 |
GTEx | Esophagus Gastroesophageal Junction | 8 | 0.554 | 1.7 |
GTEx | Pancreas | 7 | 0.429 | 1.7 |
GTEx | Pituitary | 5 | 0.448 | 1.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 8 | 0.325 | 1.7 |
GTEx | Spleen | 5 | 0.354 | 1.7 |
GTEx | Adipose Subcutaneous | 9 | 0.258 | 1.6 |
GTEx | Adrenal Gland | 5 | 0.343 | 1.6 |
GTEx | Artery Tibial | 6 | 0.160 | 1.6 |
GTEx | Brain Caudate basal ganglia | 5 | 0.543 | 1.6 |
GTEx | Brain Cerebellar Hemisphere | 6 | 0.403 | 1.6 |
GTEx | Cells Transformed fibroblasts | 11 | 0.262 | 1.6 |
GTEx | Esophagus Mucosa | 10 | 0.301 | 1.6 |
GTEx | Esophagus Muscularis | 12 | 0.371 | 1.6 |
GTEx | Heart Atrial Appendage | 7 | 0.443 | 1.6 |
GTEx | Heart Left Ventricle | 7 | 0.458 | 1.6 |
GTEx | Liver | 4 | 0.558 | 1.6 |
GTEx | Lung | 11 | 0.383 | 1.6 |
GTEx | Muscle Skeletal | 8 | 0.277 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 9 | 0.247 | 1.6 |
GTEx | Testis | 10 | 0.317 | 1.6 |
GTEx | Thyroid | 11 | 0.275 | 1.6 |
GTEx | Whole Blood | 6 | 0.301 | 1.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 4 | 0.584 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.6 |
GTEx | Nerve Tibial | 10 | 0.231 | 1.5 |
NTR | Blood | 4 | 0.167 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 1 | 0.023 | 1.5 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 3 | 0.181 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.273 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 4 | 0.136 | 1.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 5 | 0.200 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 2 | 0.120 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.434 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.281 | 1.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.394 | 1.5 |
METSIM | Adipose | 1 | 0.022 | 1.4 |
YFS | Blood | 0 | 0.000 | 1.4 |
CommonMind | Brain Pre-frontal Cortex | 3 | 0.056 | 1.4 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 3 | 0.068 | 1.4 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.4 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 3 | 0.110 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 5 | 0.122 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 2 | 0.098 | 1.4 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 4 | 0.093 | 1.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.271 | 1.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 1.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 4 | 0.301 | 1.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 5 | 0.108 | 1.4 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.4 |
The Cancer Genome Atlas | Thyroid Carcinoma | 5 | 0.097 | 1.4 |