20 significantly associated models · 13 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 154401972 | 155762509 | 1 | 1 | 2.9e-07 | 1.9e-07 | 0.2490 | 95 | EFNA1 |
2 | 2 | 47780684 | 48277490 | 1 | 1 | 1.5e-07 | 1.5e-07 | 0.0677 | 88 | MSH6 |
3 | 3 | 84317575 | 86808226 | 1 | 1 | 8.4e-13 | 2.1e-13 | 0.0587 | 93 | CADM2 |
4 | 6 | 110588546 | 112501537 | 3 | 1 | 9.3e-10 | 9.4e-11 | 0.0256 | 88 | GTF3C6 |
5 | 7 | 2646223 | 5003373 | 1 | 1 | 1.3e-08 | 7.3e-10 | 0.0084 | 82 | SDK1 |
6 | 12 | 111193499 | 113137832 | 4 | 1 | 3.4e-08 | 1.7e-10 | 0.0002 | 66 | ALDH2 |
7 | 16 | 69062879 | 70473934 | 2 | 1 | 4.5e-08 | 2.1e-07 | 0.8370 | 100 | NOB1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.7 |
GTEx | Brain Cerebellum | 4 | 0.202 | 1.7 |
GTEx | Brain Hypothalamus | 1 | 0.169 | 1.7 |
GTEx | Pancreas | 0 | 0.000 | 1.7 |
GTEx | Prostate | 0 | 0.000 | 1.7 |
GTEx | Adipose Visceral Omentum | 0 | 0.000 | 1.6 |
GTEx | Artery Coronary | 0 | 0.000 | 1.6 |
GTEx | Brain Cortex | 0 | 0.000 | 1.6 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.6 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.6 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.6 |
GTEx | Colon Transverse | 1 | 0.048 | 1.6 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.6 |
GTEx | Esophagus Muscularis | 1 | 0.031 | 1.6 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.6 |
GTEx | Lung | 0 | 0.000 | 1.6 |
GTEx | Muscle Skeletal | 1 | 0.035 | 1.6 |
GTEx | Ovary | 0 | 0.000 | 1.6 |
GTEx | Pituitary | 0 | 0.000 | 1.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 0 | 0.000 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 1 | 0.027 | 1.6 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.6 |
GTEx | Spleen | 0 | 0.000 | 1.6 |
GTEx | Testis | 0 | 0.000 | 1.6 |
GTEx | Uterus | 0 | 0.000 | 1.6 |
GTEx | Whole Blood | 0 | 0.000 | 1.6 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.5 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.5 |
GTEx | Artery Aorta | 0 | 0.000 | 1.5 |
GTEx | Artery Tibial | 0 | 0.000 | 1.5 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.5 |
GTEx | Cells Transformed fibroblasts | 0 | 0.000 | 1.5 |
GTEx | Esophagus Mucosa | 0 | 0.000 | 1.5 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.5 |
GTEx | Liver | 0 | 0.000 | 1.5 |
GTEx | Nerve Tibial | 0 | 0.000 | 1.5 |
GTEx | Stomach | 1 | 0.069 | 1.5 |
GTEx | Thyroid | 0 | 0.000 | 1.5 |
GTEx | Vagina | 0 | 0.000 | 1.5 |
METSIM | Adipose | 2 | 0.043 | 1.5 |
NTR | Blood | 0 | 0.000 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 0 | 0.000 | 1.5 |
YFS | Blood | 0 | 0.000 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 1 | 0.019 | 1.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 2 | 0.046 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 1 | 0.075 | 1.5 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 1 | 0.034 | 1.4 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Thyroid Carcinoma | 1 | 0.019 | 1.4 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.2 |