23 significantly associated models · 14 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 10 | 103550604 | 105282664 | 3 | 1 | 4.0e-11 | 1.1e-07 | 0.0302 | 83 | ACTR1A |
2 | 14 | 103342049 | 104866687 | 3 | 1 | 4.3e-08 | 1.7e-06 | 0.6790 | 99 | KLC1 |
3 | 15 | 78592277 | 79129823 | 2 | 1 | 7.7e-11 | 2.6e-12 | 0.0093 | 86 | CHRNA5 |
4 | 16 | 24614505 | 25167985 | 1 | 1 | 1.8e-07 | 7.5e-08 | 0.0657 | 88 | SLC5A11 |
5 | 17 | 34146026 | 35644076 | 3 | 1 | 4.7e-08 | 2.6e-07 | 0.7500 | 100 | GGNBP2 |
6 | 19 | 18533642 | 20117685 | 2 | 2 | 3.6e-09 | 1.5e-06 | 0.1370 | 90 | SUGP1 TMEM161A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cortex | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.6 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.5 |
GTEx | Adipose Visceral Omentum | 0 | 0.000 | 1.5 |
GTEx | Artery Aorta | 1 | 0.034 | 1.5 |
GTEx | Artery Tibial | 0 | 0.000 | 1.5 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.5 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue | 1 | 0.051 | 1.5 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.070 | 1.5 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.5 |
GTEx | Esophagus Mucosa | 0 | 0.000 | 1.5 |
GTEx | Esophagus Muscularis | 0 | 0.000 | 1.5 |
GTEx | Lung | 1 | 0.035 | 1.5 |
GTEx | Muscle Skeletal | 2 | 0.069 | 1.5 |
GTEx | Nerve Tibial | 0 | 0.000 | 1.5 |
GTEx | Pancreas | 0 | 0.000 | 1.5 |
GTEx | Prostate | 0 | 0.000 | 1.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 0 | 0.000 | 1.5 |
GTEx | Skin Sun Exposed Lower leg | 1 | 0.027 | 1.5 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.5 |
GTEx | Spleen | 0 | 0.000 | 1.5 |
GTEx | Thyroid | 0 | 0.000 | 1.5 |
METSIM | Adipose | 1 | 0.022 | 1.5 |
NTR | Blood | 0 | 0.000 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 1 | 0.023 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.5 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 1 | 0.090 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 1 | 0.063 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 1 | 0.060 | 1.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 1 | 0.022 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.5 |
GTEx | Artery Coronary | 1 | 0.085 | 1.4 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.4 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.4 |
GTEx | Cells Transformed fibroblasts | 0 | 0.000 | 1.4 |
GTEx | Colon Transverse | 0 | 0.000 | 1.4 |
GTEx | Heart Atrial Appendage | 1 | 0.063 | 1.4 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.4 |
GTEx | Pituitary | 0 | 0.000 | 1.4 |
GTEx | Stomach | 0 | 0.000 | 1.4 |
GTEx | Testis | 0 | 0.000 | 1.4 |
GTEx | Uterus | 0 | 0.000 | 1.4 |
GTEx | Whole Blood | 0 | 0.000 | 1.4 |
YFS | Blood | 1 | 0.022 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.060 | 1.4 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.023 | 1.4 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.040 | 1.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 1 | 0.075 | 1.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.4 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.3 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.3 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.3 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.3 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.3 |
GTEx | Liver | 1 | 0.139 | 1.3 |
GTEx | Ovary | 0 | 0.000 | 1.3 |
GTEx | Vagina | 0 | 0.000 | 1.3 |