1536 significantly associated models · 291 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 9395261 | 11390336 | 5 | 1 | 7.5e-17 | 2.5e-20 | 6.0e-05 | 81 | PEX14 |
2 | 1 | 18560488 | 19059839 | 1 | 1 | 5.0e-16 | 1.2e-12 | 6.7e-01 | 100 | KLHDC7A |
3 | 1 | 40173354 | 40680128 | 1 | 1 | 1.2e-07 | 2.7e-05 | 5.4e-01 | 98 | MFSD2A |
4 | 1 | 44623428 | 46844530 | 6 | 1 | 2.5e-08 | 3.0e-08 | 1.5e-02 | 81 | GPBP1L1 |
5 | 1 | 109513274 | 110936557 | 3 | 1 | 5.1e-08 | 9.2e-07 | 9.4e-04 | 55 | GSTM1 |
6 | 1 | 113541801 | 115152814 | 3 | 1 | 4.4e-09 | 4.4e-11 | 2.7e-03 | 79 | DCLRE1B |
7 | 1 | 117708477 | 119169364 | 1 | 1 | 5.0e-09 | 1.7e-10 | 2.7e-04 | 68 | GDAP2 |
8 | 1 | 120208297 | 121312687 | 3 | 3 | 2.4e-50 | 1.8e-52 | 1.0e+00 | 100 | HIST2H2BA |
9 | 1 | 144896319 | 145747463 | 3 | 1 | 4.3e-13 | 2.3e-10 | 2.2e-03 | 77 | ANKRD34A |
10 | 1 | 149672809 | 150515021 | 3 | 1 | 1.3e-09 | 1.1e-14 | 1.3e-06 | 61 | RP11-196G18.24 |
11 | 1 | 154462360 | 156838141 | 20 | 2 | 3.3e-11 | 4.8e-11 | 8.9e-01 | 100 | GBAP1 SEMA4A |
12 | 1 | 203068720 | 204522489 | 2 | 2 | 3.7e-08 | 2.1e-10 | NaN | NaN | SNRPE ZC3H11A |
13 | 2 | 24324172 | 25889403 | 4 | 1 | 3.3e-12 | 1.0e-11 | 2.7e-01 | 97 | ADCY3 |
14 | 2 | 68993402 | 69723710 | 1 | 1 | 7.0e-10 | 9.6e-08 | 7.1e-04 | 60 | ANTXR1 |
15 | 2 | 120301828 | 121747406 | 1 | 1 | 3.7e-10 | 5.3e-20 | 5.1e-18 | 11 | RALB |
16 | 2 | 171683107 | 173097928 | 1 | 1 | 3.2e-08 | 6.2e-12 | 1.9e-10 | 14 | CYBRD1 |
17 | 2 | 201131124 | 203176201 | 6 | 1 | 4.4e-17 | 1.4e-16 | 1.0e+00 | 100 | ALS2CR12 |
18 | 2 | 217908472 | 218866036 | 1 | 3 | 7.5e-17 | 3.2e-93 | 5.6e-93 | 0 | DIRC3 |
19 | 3 | 26563909 | 28211713 | 2 | 6 | 1.3e-60 | 5.2e-63 | NaN | NaN | NEK10 SLC4A7 |
20 | 3 | 46463424 | 47958037 | 3 | 3 | 3.8e-10 | 5.8e-19 | NaN | NaN | KIF9-AS1 PRSS45 |
21 | 3 | 63121945 | 64684683 | 4 | 1 | 2.1e-12 | 3.0e-12 | 1.0e+00 | 100 | ATXN7 |
22 | 3 | 98838914 | 100872536 | 7 | 1 | 1.8e-10 | 5.2e-10 | 1.2e-01 | 94 | C3orf26 |
23 | 3 | 140350567 | 141867638 | 1 | 1 | 1.0e-13 | 2.9e-14 | 1.0e+00 | 100 | ZBTB38 |
24 | 3 | 155768424 | 157226796 | 1 | 1 | 2.0e-07 | 6.8e-07 | 3.6e-01 | 97 | LINC00886 |
25 | 4 | 38097478 | 39643536 | 3 | 1 | 3.6e-11 | 1.5e-12 | 1.2e-02 | 87 | TLR1 |
26 | 4 | 83635581 | 85097232 | 3 | 1 | 1.9e-09 | 6.3e-09 | 1.4e-01 | 94 | MRPS18C |
27 | 4 | 88937491 | 89452479 | 1 | 1 | 1.3e-09 | 1.6e-09 | 1.5e-01 | 94 | PPM1K |
28 | 5 | 12225 | 1546049 | 2 | 2 | 1.2e-07 | 3.9e-19 | 1.0e-19 | -3 | EXOC3 ZDHHC11 |
29 | 5 | 44048891 | 45516364 | 3 | 5 | 4.8e-58 | 4.8e-58 | 1.0e+00 | 100 | MRPS30 RP11-53O19.1 RP11-53O19.3 |
30 | 5 | 49462228 | 50836718 | 1 | 1 | 1.5e-07 | 1.5e-08 | 3.7e-06 | 33 | PARP8 |
31 | 5 | 55509554 | 56923759 | 5 | 10 | 7.5e-67 | 8.8e-98 | NaN | NaN | C5orf35 CTD-2310F14.1 MAP3K1 MIER3 SETD9 |
32 | 5 | 80580063 | 82378422 | 3 | 1 | 3.8e-13 | 8.9e-13 | 2.0e-01 | 97 | ATG10 |
33 | 5 | 90431779 | 90941201 | 1 | 1 | 1.0e-08 | 9.0e-12 | 1.9e-04 | 70 | LOC100129716 |
34 | 5 | 130830617 | 133140038 | 5 | 2 | 1.3e-08 | 9.4e-09 | 1.0e+00 | 100 | HSPA4 UQCRQ |
35 | 6 | 12934687 | 14408104 | 2 | 1 | 2.1e-10 | 6.4e-13 | 2.5e-05 | 66 | RANBP9 |
36 | 6 | 42946943 | 43442756 | 1 | 1 | 2.0e-07 | 1.7e-06 | 4.9e-01 | 98 | C6orf108 |
37 | 6 | 80481695 | 81872212 | 1 | 1 | 5.4e-09 | 3.1e-09 | 1.1e-01 | 93 | RP11-250B2.5 |
38 | 6 | 122034905 | 123452449 | 1 | 1 | 3.9e-08 | 2.3e-06 | 5.2e-02 | 83 | HSF2 |
39 | 6 | 129638583 | 131163098 | 2 | 1 | 6.2e-14 | 3.0e-12 | 9.2e-01 | 100 | RP11-73O6.3 |
40 | 6 | 151569243 | 152184020 | 1 | 3 | 1.0e-29 | 4.8e-54 | 5.5e-25 | 56 | C6orf97 |
41 | 7 | 90874777 | 92571165 | 6 | 1 | 5.2e-11 | 5.1e-11 | 2.6e-01 | 97 | CYP51A1 |
42 | 7 | 93516077 | 94977637 | 1 | 1 | 1.5e-12 | 5.5e-13 | 6.6e-02 | 94 | SGCE |
43 | 7 | 101420819 | 102943552 | 3 | 3 | 8.6e-08 | 1.2e-11 | 9.2e-09 | 28 | POLR2J RASA4 |
44 | 7 | 143425361 | 144768633 | 1 | 1 | 4.8e-12 | 1.2e-11 | 1.0e+00 | 100 | ARHGEF5 |
45 | 8 | 75200357 | 76725867 | 2 | 2 | 1.7e-10 | 3.1e-24 | 3.9e-15 | 40 | CRISPLD1 HNF4G |
46 | 8 | 123814825 | 125250560 | 1 | 1 | 1.3e-08 | 2.2e-12 | 4.1e-15 | -25 | FBXO32 |
47 | 8 | 128107136 | 129812343 | 1 | 1 | 7.5e-21 | 8.1e-62 | 3.0e-45 | 28 | PVT1 |
48 | 9 | 21303958 | 22705094 | 1 | 1 | 2.0e-13 | 1.2e-19 | 2.5e-08 | 62 | CDKN2B |
49 | 9 | 106163708 | 107600193 | 1 | 1 | 1.1e-08 | 1.9e-07 | 1.0e+00 | 100 | SMC2 |
50 | 10 | 21087485 | 22724472 | 2 | 1 | 1.0e-12 | 1.8e-19 | 2.6e-08 | 62 | MLLT10 |
51 | 10 | 64195778 | 65606229 | 2 | 2 | 6.3e-09 | 1.6e-49 | 4.7e-44 | 12 | ADO NRBF2 |
52 | 10 | 113511441 | 115622375 | 2 | 1 | 8.4e-14 | 1.0e-14 | 1.2e-14 | 1 | TCF7L2 |
53 | 10 | 122801759 | 124407934 | 2 | 3 | 7.1e-12 | 0.0e+00 | 3.3e-294 | 6 | ATE1 RP11-500G22.2 |
54 | 11 | 198510 | 2705175 | 21 | 3 | 9.0e-34 | 6.3e-33 | 1.7e-03 | 93 | RNH1 RPLP2 TNNT3 |
55 | 11 | 64721908 | 67294308 | 14 | 2 | 7.8e-13 | 3.9e-12 | 2.6e-02 | 90 | C11orf80 DKFZp761E198 |
56 | 11 | 68227852 | 70159781 | 2 | 2 | 8.5e-09 | 2.8e-43 | 5.6e-37 | 15 | CCND1 RP11-554A11.9 |
57 | 11 | 110908587 | 112335631 | 1 | 1 | 2.2e-08 | 2.5e-07 | 7.4e-01 | 100 | PPP2R1B |
58 | 14 | 68037895 | 69442848 | 1 | 1 | 2.8e-07 | 6.5e-42 | 4.4e-37 | 12 | RAD51L1 |
59 | 14 | 91042968 | 93847625 | 3 | 3 | 1.8e-12 | 8.2e-13 | 4.8e-07 | 50 | CCDC88C GPR68 RIN3 |
60 | 14 | 104497543 | 105959867 | 5 | 1 | 7.4e-09 | 5.9e-08 | 9.1e-01 | 100 | RP11-982M15.2 |
61 | 15 | 63099535 | 64579572 | 1 | 1 | 2.2e-07 | 6.6e-05 | 1.6e-03 | 37 | USP3 |
62 | 15 | 74431715 | 76613093 | 5 | 2 | 6.5e-09 | 2.9e-07 | 3.5e-01 | 97 | MAN2C1 ULK3 |
63 | 15 | 90776375 | 92225560 | 5 | 7 | 9.5e-16 | 1.9e-15 | 1.0e+00 | 100 | AC068831.6 FES RCCD1 |
64 | 16 | 3304762 | 4855279 | 1 | 1 | 1.6e-07 | 2.6e-06 | 5.0e-02 | 83 | ADCY9 |
65 | 16 | 52222053 | 52828325 | 1 | 1 | 3.1e-168 | 6.9e-201 | 3.6e-39 | 81 | TOX3 |
66 | 16 | 55697964 | 57248479 | 3 | 1 | 1.2e-09 | 6.3e-08 | 6.9e-02 | 89 | BBS2 |
67 | 16 | 80392506 | 81087529 | 1 | 1 | 3.3e-27 | 6.2e-27 | 1.0e+00 | 100 | CDYL2 |
68 | 17 | 28559182 | 30034689 | 2 | 1 | 4.4e-10 | 1.4e-09 | 3.8e-04 | 66 | RP11-848P1.7 |
69 | 17 | 39993748 | 41393295 | 3 | 1 | 1.2e-08 | 1.7e-07 | 1.4e-06 | 15 | NAGLU |
70 | 17 | 42774693 | 45796313 | 16 | 1 | 1.2e-11 | 1.8e-10 | 1.0e+00 | 100 | LRRC37A4P |
71 | 17 | 52287259 | 54097059 | 5 | 1 | 2.1e-27 | 1.1e-28 | 1.0e+00 | 100 | STXBP4 |
72 | 17 | 77072043 | 78469357 | 1 | 1 | 3.5e-10 | 3.9e-10 | 1.0e+00 | 100 | CBX8 |
73 | 18 | 24020065 | 24532336 | 1 | 1 | 1.2e-07 | 3.2e-17 | 1.9e-18 | -8 | LOC728606 |
74 | 19 | 12365196 | 13960562 | 4 | 1 | 5.9e-11 | 1.1e-08 | 1.8e-10 | -25 | IER2 |
75 | 19 | 16699813 | 20451172 | 20 | 3 | 2.8e-28 | 2.8e-28 | 1.0e+00 | 100 | ANKLE1 GATAD2A SSBP4 |
76 | 19 | 43422999 | 45202640 | 8 | 2 | 9.6e-18 | 1.4e-16 | 3.2e-01 | 99 | KCNN4 PINLYP |
77 | 20 | 48109475 | 49505582 | 1 | 1 | 1.1e-11 | 9.9e-10 | 3.7e-02 | 88 | CEBPB |
78 | 22 | 28125740 | 30357801 | 5 | 2 | 1.6e-16 | 2.8e-11 | 2.2e-01 | 97 | CHEK2 RHBDD3 |
79 | 22 | 37643564 | 41895409 | 14 | 10 | 1.7e-33 | 1.1e-34 | NaN | NaN | ADSL APOBEC3A BAIAP2L2 C22orf23 MCHR1 MKL1 SLC25A17 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Putamen basal ganglia | 11 | 1.85 | 3.3 |
GTEx | Brain Frontal Cortex BA9 | 15 | 1.69 | 3.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 14 | 1.69 | 3.1 |
GTEx | Spleen | 23 | 1.69 | 3.1 |
GTEx | Brain Hypothalamus | 9 | 1.56 | 3.0 |
GTEx | Brain Caudate basal ganglia | 13 | 1.47 | 2.9 |
GTEx | Brain Cortex | 16 | 1.59 | 2.9 |
GTEx | Breast Mammary Tissue | 32 | 1.69 | 2.9 |
GTEx | Breast Mammary Tissue (Male) | 19 | 1.67 | 2.9 |
GTEx | Stomach | 23 | 1.65 | 2.9 |
GTEx | Adipose Visceral Omentum | 22 | 1.14 | 2.8 |
GTEx | Artery Coronary | 19 | 1.67 | 2.8 |
GTEx | Brain Hippocampus | 7 | 1.40 | 2.8 |
GTEx | Breast Mammary Tissue (Female) | 20 | 1.28 | 2.8 |
GTEx | Cells EBV-transformed lymphocytes | 22 | 1.62 | 2.8 |
GTEx | Colon Sigmoid | 22 | 1.59 | 2.8 |
GTEx | Heart Atrial Appendage | 19 | 1.25 | 2.8 |
GTEx | Pancreas | 22 | 1.41 | 2.8 |
GTEx | Whole Blood | 26 | 1.36 | 2.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 42 | 1.00 | 2.8 |
GTEx | Adrenal Gland | 14 | 1.01 | 2.7 |
GTEx | Artery Aorta | 32 | 1.13 | 2.7 |
GTEx | Brain Cerebellar Hemisphere | 16 | 1.12 | 2.7 |
GTEx | Brain Cerebellum | 24 | 1.26 | 2.7 |
GTEx | Colon Transverse | 28 | 1.42 | 2.7 |
GTEx | Esophagus Mucosa | 37 | 1.16 | 2.7 |
GTEx | Esophagus Muscularis | 33 | 1.07 | 2.7 |
GTEx | Liver | 7 | 1.02 | 2.7 |
GTEx | Lung | 33 | 1.20 | 2.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 26 | 1.11 | 2.7 |
GTEx | Small Intestine Terminal Ileum | 8 | 1.82 | 2.7 |
GTEx | Uterus | 7 | 1.28 | 2.7 |
GTEx | Vagina | 9 | 1.49 | 2.7 |
GTEx | Adipose Subcutaneous | 31 | 0.93 | 2.6 |
GTEx | Artery Tibial | 40 | 1.12 | 2.6 |
GTEx | Esophagus Gastroesophageal Junction | 14 | 1.01 | 2.6 |
GTEx | Heart Left Ventricle | 14 | 0.95 | 2.6 |
GTEx | Muscle Skeletal | 29 | 1.05 | 2.6 |
GTEx | Nerve Tibial | 39 | 0.95 | 2.6 |
GTEx | Ovary | 11 | 1.26 | 2.6 |
GTEx | Pituitary | 12 | 1.12 | 2.6 |
GTEx | Prostate | 11 | 1.37 | 2.6 |
GTEx | Skin Sun Exposed Lower leg | 37 | 1.06 | 2.6 |
GTEx | Testis | 36 | 1.20 | 2.6 |
GTEx | Thyroid | 46 | 1.20 | 2.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 14 | 1.42 | 2.6 |
GTEx | Cells Transformed fibroblasts | 37 | 0.92 | 2.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 23 | 1.17 | 2.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 24 | 1.23 | 2.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 13 | 0.82 | 2.5 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 4 | 0.82 | 2.5 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 27 | 1.05 | 2.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 32 | 0.82 | 2.4 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 37 | 0.90 | 2.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 10 | 0.95 | 2.4 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 27 | 0.96 | 2.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 15 | 0.99 | 2.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 16 | 1.00 | 2.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.63 | 2.4 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 31 | 0.70 | 2.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 10 | 0.98 | 2.4 |
NTR | Blood | 18 | 0.80 | 2.3 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 8 | 0.76 | 2.3 |
The Cancer Genome Atlas | Esophageal Carcinoma | 8 | 1.21 | 2.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 14 | 0.59 | 2.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 33 | 0.67 | 2.3 |
METSIM | Adipose | 31 | 0.71 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 20 | 0.47 | 2.2 |
YFS | Blood | 29 | 0.67 | 2.2 |
CommonMind | Brain Pre-frontal Cortex | 41 | 0.80 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 9 | 0.58 | 2.2 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.39 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 3 | 0.25 | 2.2 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.30 | 2.1 |