57 significantly associated models · 23 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 109098737 | 110517617 | 3 | 1 | 7.0e-10 | 2.9e-10 | 1.0e+00 | 100 | PSRC1 |
2 | 2 | 202952678 | 204788156 | 7 | 1 | 3.9e-11 | 1.8e-11 | 1.0e+00 | 100 | ICA1L |
3 | 3 | 137189600 | 138819532 | 2 | 1 | 4.1e-08 | 3.3e-08 | 2.4e-01 | 96 | MRAS |
4 | 6 | 12020241 | 13990267 | 2 | 1 | 2.4e-13 | 2.5e-11 | 9.5e-01 | 100 | RP1-257A7.5 |
5 | 8 | 19547307 | 20071503 | 1 | 1 | 8.4e-08 | 3.0e-07 | 9.2e-02 | 89 | LPL |
6 | 9 | 21303958 | 22819407 | 2 | 1 | 5.8e-21 | 2.3e-30 | 3.5e-11 | 67 | CDKN2B |
7 | 9 | 135883620 | 136399075 | 1 | 1 | 8.2e-08 | 1.2e-07 | 1.7e-02 | 80 | ABO |
8 | 12 | 111882485 | 112443960 | 1 | 1 | 1.4e-07 | 1.4e-07 | 1.0e+00 | 100 | ACAD10 |
9 | 15 | 78360691 | 79802863 | 2 | 2 | 9.6e-11 | 2.9e-09 | 4.7e-03 | 77 | ADAMTS7 MORF4L1 |
10 | 17 | 46258510 | 47685050 | 1 | 1 | 2.9e-07 | 3.6e-06 | 2.4e-02 | 76 | RP11-463M16.4 |
11 | 19 | 10793749 | 12191233 | 1 | 1 | 4.2e-08 | 9.7e-10 | 1.0e+00 | 100 | EPOR |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Adipose Visceral Omentum | 1 | 0.055 | 1.5 |
GTEx | Artery Aorta | 4 | 0.151 | 1.5 |
GTEx | Artery Coronary | 3 | 0.280 | 1.5 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.120 | 1.5 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Liver | 1 | 0.153 | 1.5 |
GTEx | Whole Blood | 1 | 0.057 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 1 | 0.069 | 1.5 |
GTEx | Adipose Subcutaneous | 3 | 0.097 | 1.4 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.4 |
GTEx | Artery Tibial | 4 | 0.119 | 1.4 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Brain Cortex | 0 | 0.000 | 1.4 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.4 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.4 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.4 |
GTEx | Cells EBV-transformed lymphocytes | 1 | 0.078 | 1.4 |
GTEx | Cells Transformed fibroblasts | 3 | 0.079 | 1.4 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.4 |
GTEx | Colon Transverse | 0 | 0.000 | 1.4 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.4 |
GTEx | Esophagus Mucosa | 1 | 0.034 | 1.4 |
GTEx | Esophagus Muscularis | 0 | 0.000 | 1.4 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.4 |
GTEx | Lung | 0 | 0.000 | 1.4 |
GTEx | Muscle Skeletal | 2 | 0.077 | 1.4 |
GTEx | Nerve Tibial | 2 | 0.052 | 1.4 |
GTEx | Ovary | 0 | 0.000 | 1.4 |
GTEx | Pancreas | 0 | 0.000 | 1.4 |
GTEx | Prostate | 0 | 0.000 | 1.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 2 | 0.090 | 1.4 |
GTEx | Skin Sun Exposed Lower leg | 1 | 0.031 | 1.4 |
GTEx | Spleen | 0 | 0.000 | 1.4 |
GTEx | Stomach | 0 | 0.000 | 1.4 |
GTEx | Testis | 1 | 0.035 | 1.4 |
GTEx | Thyroid | 1 | 0.028 | 1.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 1 | 0.105 | 1.4 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.173 | 1.4 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 1 | 0.104 | 1.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.167 | 1.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.4 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.3 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.3 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.3 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.3 |
GTEx | Pituitary | 0 | 0.000 | 1.3 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.3 |
GTEx | Uterus | 0 | 0.000 | 1.3 |
GTEx | Vagina | 0 | 0.000 | 1.3 |
METSIM | Adipose | 2 | 0.048 | 1.3 |
NTR | Blood | 1 | 0.044 | 1.3 |
ROSMAP | Brain Pre-frontal Cortex | 2 | 0.050 | 1.3 |
YFS | Blood | 0 | 0.000 | 1.3 |
CommonMind | Brain Pre-frontal Cortex | 4 | 0.081 | 1.3 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.072 | 1.3 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 1 | 0.027 | 1.3 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 2 | 0.057 | 1.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 1 | 0.058 | 1.3 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.027 | 1.3 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 1 | 0.040 | 1.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.047 | 1.3 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 1 | 0.023 | 1.3 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.2 |