131 significantly associated models · 35 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 5988926 | 7460433 | 2 | 1 | 1.8e-07 | 4.4e-07 | 3.8e-01 | 97 | DNAJC11 |
2 | 1 | 11060075 | 12600396 | 2 | 1 | 6.9e-11 | 9.6e-11 | 1.8e-02 | 86 | CLCN6 |
3 | 1 | 109098737 | 110733794 | 4 | 1 | 3.9e-20 | 3.2e-20 | 1.0e+00 | 100 | PSRC1 |
4 | 2 | 20529948 | 21958745 | 1 | 1 | 4.7e-09 | 1.2e-09 | 1.7e-02 | 84 | APOB |
5 | 3 | 26720690 | 28211713 | 1 | 1 | 2.7e-07 | 8.8e-08 | 5.2e-02 | 87 | SLC4A7 |
6 | 7 | 99122437 | 100516003 | 1 | 1 | 9.7e-08 | 2.1e-06 | 9.7e-01 | 100 | PVRIG |
7 | 11 | 99859184 | 101559718 | 2 | 1 | 5.5e-14 | 1.3e-13 | 1.8e-01 | 97 | TMEM133 |
8 | 11 | 110721187 | 112287801 | 3 | 1 | 7.3e-10 | 6.1e-10 | 1.0e+00 | 100 | SIK2 |
9 | 11 | 115953897 | 117745003 | 3 | 3 | 4.7e-14 | 4.1e-15 | 8.5e-01 | 100 | BUD13 PAFAH1B2 ZNF259 |
10 | 12 | 89286081 | 90799212 | 1 | 1 | 1.1e-07 | 3.1e-09 | 8.3e-03 | 80 | ATP2B1 |
11 | 12 | 111154626 | 112582540 | 1 | 1 | 2.0e-07 | 1.2e-10 | 5.4e-05 | 61 | SH2B3 |
12 | 15 | 74042497 | 75724703 | 2 | 1 | 4.6e-08 | 4.5e-08 | 2.3e-01 | 95 | CSK |
13 | 15 | 90712555 | 92135418 | 2 | 1 | 8.3e-19 | 1.1e-15 | 6.7e-01 | 100 | FES |
14 | 17 | 60858059 | 62279811 | 2 | 1 | 1.3e-10 | 9.7e-10 | 1.0e+00 | 100 | ACE |
15 | 19 | 10793749 | 12191233 | 1 | 1 | 2.9e-07 | 1.8e-14 | 3.0e-09 | 40 | EPOR |
16 | 20 | 30083621 | 31469577 | 1 | 1 | 9.0e-08 | 7.3e-06 | 1.9e-01 | 92 | TSPY26P |
17 | 20 | 57525478 | 58079512 | 1 | 1 | 3.4e-09 | 1.0e-12 | 2.5e-05 | 65 | ZNF831 |
18 | 20 | 61989111 | 62912463 | 4 | 1 | 1.2e-10 | 5.5e-09 | 3.2e-01 | 97 | RGS19 |
19 | 21 | 44711272 | 45327770 | 1 | 1 | 1.1e-07 | 1.3e-07 | 8.5e-02 | 89 | HSF2BP |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Adrenal Gland | 2 | 0.137 | 1.8 |
GTEx | Brain Cortex | 0 | 0.000 | 1.8 |
GTEx | Lung | 2 | 0.070 | 1.8 |
GTEx | Muscle Skeletal | 3 | 0.104 | 1.8 |
GTEx | Stomach | 2 | 0.138 | 1.8 |
GTEx | Vagina | 1 | 0.157 | 1.8 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 4 | 0.238 | 1.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.8 |
GTEx | Adipose Subcutaneous | 2 | 0.057 | 1.7 |
GTEx | Adipose Visceral Omentum | 1 | 0.049 | 1.7 |
GTEx | Artery Aorta | 5 | 0.168 | 1.7 |
GTEx | Artery Tibial | 6 | 0.160 | 1.7 |
GTEx | Brain Cerebellar Hemisphere | 2 | 0.134 | 1.7 |
GTEx | Brain Cerebellum | 1 | 0.050 | 1.7 |
GTEx | Brain Frontal Cortex BA9 | 0 | 0.000 | 1.7 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Breast Mammary Tissue | 0 | 0.000 | 1.7 |
GTEx | Cells Transformed fibroblasts | 4 | 0.095 | 1.7 |
GTEx | Colon Transverse | 1 | 0.048 | 1.7 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.7 |
GTEx | Esophagus Mucosa | 3 | 0.090 | 1.7 |
GTEx | Esophagus Muscularis | 2 | 0.062 | 1.7 |
GTEx | Heart Atrial Appendage | 0 | 0.000 | 1.7 |
GTEx | Liver | 2 | 0.279 | 1.7 |
GTEx | Ovary | 0 | 0.000 | 1.7 |
GTEx | Pancreas | 1 | 0.061 | 1.7 |
GTEx | Pituitary | 0 | 0.000 | 1.7 |
GTEx | Prostate | 0 | 0.000 | 1.7 |
GTEx | Skin Not Sun Exposed Suprapubic | 2 | 0.081 | 1.7 |
GTEx | Skin Sun Exposed Lower leg | 4 | 0.110 | 1.7 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.7 |
GTEx | Testis | 1 | 0.032 | 1.7 |
GTEx | Thyroid | 2 | 0.050 | 1.7 |
GTEx | Whole Blood | 2 | 0.100 | 1.7 |
ROSMAP | Brain Pre-frontal Cortex | 3 | 0.068 | 1.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 2 | 0.182 | 1.7 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 6 | 0.291 | 1.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 1 | 0.098 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 2 | 0.049 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 2 | 0.098 | 1.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.181 | 1.7 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 3 | 0.102 | 1.7 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 3 | 0.120 | 1.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 1.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 1 | 0.060 | 1.7 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 1 | 0.094 | 1.7 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 1.7 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 2 | 0.156 | 1.7 |
GTEx | Artery Coronary | 0 | 0.000 | 1.6 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.6 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.6 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 1.6 |
GTEx | Brain Putamen basal ganglia | 1 | 0.160 | 1.6 |
GTEx | Breast Mammary Tissue (Male) | 0 | 0.000 | 1.6 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.6 |
GTEx | Colon Sigmoid | 1 | 0.068 | 1.6 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.6 |
GTEx | Nerve Tibial | 1 | 0.023 | 1.6 |
GTEx | Spleen | 0 | 0.000 | 1.6 |
GTEx | Uterus | 0 | 0.000 | 1.6 |
METSIM | Adipose | 2 | 0.043 | 1.6 |
NTR | Blood | 0 | 0.000 | 1.6 |
YFS | Blood | 6 | 0.130 | 1.6 |
CommonMind | Brain Pre-frontal Cortex | 8 | 0.149 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 8 | 0.182 | 1.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 3 | 0.110 | 1.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 2 | 0.046 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 5 | 0.108 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 4 | 0.078 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 2 | 0.121 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 1.5 |