327 significantly associated models · 91 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 24404988 | 24929676 | 1 | 1 | 2.1e-08 | 2.0e-05 | 3.0e-01 | 94 | GRHL3 |
2 | 1 | 150527354 | 151021509 | 1 | 1 | 1.5e-08 | 5.4e-09 | 1.3e-01 | 93 | CTSK |
3 | 1 | 153220716 | 155699118 | 8 | 2 | 3.4e-09 | 3.8e-08 | 3.7e-02 | 86 | CRTC2 DCST2 |
4 | 1 | 203692179 | 206329620 | 3 | 2 | 4.8e-13 | 2.3e-13 | 1.0e+00 | 100 | MDM4 NUCKS1 |
5 | 2 | 10016627 | 11619674 | 2 | 1 | 2.7e-11 | 8.1e-12 | 8.6e-03 | 85 | NOL10 |
6 | 2 | 20189015 | 21719583 | 1 | 1 | 1.1e-08 | 1.6e-10 | 1.6e-03 | 76 | C2orf43 |
7 | 2 | 62211083 | 64747556 | 3 | 6 | 1.2e-17 | 5.0e-20 | NaN | NaN | AC007098.1 EHBP1 WDPCP |
8 | 2 | 84884961 | 86518249 | 6 | 1 | 2.5e-12 | 9.2e-11 | 8.3e-01 | 100 | GGCX |
9 | 3 | 86583852 | 87999964 | 1 | 1 | 8.7e-16 | 8.5e-21 | 5.3e-07 | 71 | CHMP2B |
10 | 3 | 112317291 | 114043692 | 3 | 1 | 7.2e-12 | 3.8e-09 | 5.9e-01 | 99 | WDR52 |
11 | 3 | 127074386 | 128821807 | 3 | 1 | 8.7e-15 | 6.9e-14 | 6.8e-01 | 100 | EEFSEC |
12 | 3 | 169058009 | 170717996 | 4 | 4 | 8.1e-13 | 1.7e-11 | 1.0e+00 | 100 | GPR160 PHC3 PRKCI SKIL |
13 | 4 | 94674019 | 96286793 | 1 | 1 | 1.1e-09 | 1.8e-09 | 8.1e-02 | 92 | PDLIM5 |
14 | 5 | 1635899 | 2131784 | 1 | 1 | 3.2e-12 | 1.4e-12 | 1.0e+00 | 100 | IRX4 |
15 | 7 | 26010759 | 28573565 | 3 | 3 | 7.1e-17 | 1.3e-22 | 2.7e-07 | 72 | SKAP2 TAX1BP1 |
16 | 7 | 97038925 | 98725348 | 7 | 2 | 2.6e-15 | 3.7e-18 | 1.2e-01 | 97 | BHLHA15 LMTK2 |
17 | 8 | 22842752 | 24224911 | 1 | 2 | 6.4e-11 | 4.8e-28 | 7.1e-17 | 42 | NKX3-1 |
18 | 9 | 18355044 | 19797850 | 2 | 1 | 4.1e-09 | 6.7e-10 | 5.4e-02 | 90 | HAUS6 |
19 | 10 | 50336129 | 52456629 | 6 | 2 | 7.2e-68 | 6.1e-59 | 3.0e-03 | 97 | AGAP6 NCOA4 |
20 | 10 | 103718818 | 105108455 | 1 | 1 | 1.7e-07 | 4.9e-06 | 6.4e-01 | 99 | TRIM8 |
21 | 11 | 1938523 | 2541165 | 2 | 2 | 9.2e-12 | 7.2e-29 | 1.2e-14 | 52 | ASCL2 TH |
22 | 11 | 68227852 | 69623641 | 1 | 4 | 4.8e-38 | 2.5e-45 | 1.0e-11 | 77 | RP11-554A11.9 |
23 | 11 | 75457950 | 76959598 | 1 | 1 | 3.0e-07 | 2.7e-08 | 1.0e+00 | 100 | C11orf30 |
24 | 17 | 3587 | 1381005 | 5 | 1 | 3.2e-13 | 3.2e-12 | 1.0e+00 | 100 | GEMIN4 |
25 | 17 | 35034943 | 36441093 | 2 | 4 | 2.2e-44 | 1.7e-73 | 1.7e-30 | 60 | C17orf78 HNF1B |
26 | 19 | 38052193 | 39476803 | 2 | 1 | 2.1e-21 | 4.9e-20 | 9.6e-03 | 92 | PPP1R14A |
27 | 19 | 41260831 | 42741124 | 3 | 1 | 2.0e-12 | 6.3e-12 | 1.0e+00 | 100 | AC011526.1 |
28 | 20 | 61576647 | 62912463 | 6 | 2 | 6.6e-12 | 1.6e-11 | 1.0e+00 | 100 | LIME1 STMN3 |
29 | 21 | 42591611 | 43141441 | 1 | 1 | 4.6e-08 | 2.4e-11 | 6.9e-05 | 64 | TMPRSS2 |
30 | 22 | 42835727 | 44282307 | 5 | 1 | 5.0e-34 | 3.2e-43 | 8.4e-30 | 32 | BIK |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Prostate | 4 | 0.529 | 2.0 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 17 | 0.418 | 1.8 |
GTEx | Adipose Subcutaneous | 9 | 0.288 | 1.7 |
GTEx | Brain Cerebellar Hemisphere | 4 | 0.301 | 1.7 |
GTEx | Brain Frontal Cortex BA9 | 3 | 0.358 | 1.7 |
GTEx | Brain Nucleus accumbens basal ganglia | 2 | 0.254 | 1.7 |
GTEx | Brain Putamen basal ganglia | 1 | 0.178 | 1.7 |
GTEx | Breast Mammary Tissue | 7 | 0.393 | 1.7 |
GTEx | Breast Mammary Tissue (Male) | 4 | 0.372 | 1.7 |
GTEx | Breast Mammary Tissue (Female) | 6 | 0.405 | 1.7 |
GTEx | Colon Transverse | 7 | 0.378 | 1.7 |
GTEx | Esophagus Mucosa | 10 | 0.337 | 1.7 |
GTEx | Esophagus Muscularis | 9 | 0.314 | 1.7 |
GTEx | Nerve Tibial | 14 | 0.362 | 1.7 |
GTEx | Spleen | 3 | 0.235 | 1.7 |
NTR | Blood | 8 | 0.380 | 1.7 |
YFS | Blood | 12 | 0.297 | 1.7 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.169 | 1.7 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 3 | 0.167 | 1.7 |
GTEx | Adipose Visceral Omentum | 6 | 0.325 | 1.6 |
GTEx | Artery Tibial | 8 | 0.240 | 1.6 |
GTEx | Brain Cerebellum | 6 | 0.334 | 1.6 |
GTEx | Brain Cortex | 3 | 0.319 | 1.6 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.6 |
GTEx | Brain Hypothalamus | 1 | 0.185 | 1.6 |
GTEx | Cells EBV-transformed lymphocytes | 4 | 0.316 | 1.6 |
GTEx | Cells Transformed fibroblasts | 10 | 0.269 | 1.6 |
GTEx | Colon Sigmoid | 5 | 0.381 | 1.6 |
GTEx | Heart Atrial Appendage | 2 | 0.141 | 1.6 |
GTEx | Heart Left Ventricle | 4 | 0.292 | 1.6 |
GTEx | Liver | 1 | 0.156 | 1.6 |
GTEx | Lung | 5 | 0.195 | 1.6 |
GTEx | Pancreas | 2 | 0.137 | 1.6 |
GTEx | Pituitary | 0 | 0.000 | 1.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 7 | 0.318 | 1.6 |
GTEx | Skin Sun Exposed Lower leg | 11 | 0.338 | 1.6 |
GTEx | Small Intestine Terminal Ileum | 1 | 0.245 | 1.6 |
GTEx | Stomach | 3 | 0.231 | 1.6 |
GTEx | Testis | 9 | 0.320 | 1.6 |
GTEx | Thyroid | 10 | 0.281 | 1.6 |
GTEx | Vagina | 2 | 0.345 | 1.6 |
GTEx | Whole Blood | 4 | 0.225 | 1.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 4 | 0.279 | 1.6 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 12 | 0.308 | 1.6 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 2 | 0.219 | 1.6 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 2 | 0.207 | 1.6 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 8 | 0.309 | 1.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.6 |
The Cancer Genome Atlas | Thyroid Carcinoma | 12 | 0.263 | 1.6 |
GTEx | Adrenal Gland | 2 | 0.154 | 1.5 |
GTEx | Artery Aorta | 5 | 0.188 | 1.5 |
GTEx | Artery Coronary | 2 | 0.187 | 1.5 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.5 |
GTEx | Esophagus Gastroesophageal Junction | 2 | 0.153 | 1.5 |
GTEx | Muscle Skeletal | 6 | 0.233 | 1.5 |
GTEx | Ovary | 1 | 0.121 | 1.5 |
GTEx | Uterus | 1 | 0.195 | 1.5 |
METSIM | Adipose | 6 | 0.149 | 1.5 |
ROSMAP | Brain Pre-frontal Cortex | 6 | 0.150 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 11 | 0.232 | 1.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 2 | 0.084 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 3 | 0.083 | 1.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 6 | 0.158 | 1.5 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 2 | 0.145 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 1 | 0.069 | 1.5 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.089 | 1.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 1 | 0.046 | 1.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.213 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.3 |